bl_vcf_call_in_alignment(3)

NAME
bl_vcf_call_in_alignment() - Return true if VCF call is within alignment

LIBRARY
#include <biolibc/vcf.h>
-lbiolibc -lxtend

SYNOPSIS
bool    bl_vcf_call_in_alignment(bl_vcf_t *vcf_call, bl_sam_t *sam_alignment)

ARGUMENTS
vcf_call    Pointer to bl_vcf_t structure containing VCF call
sam_alignment   Pointer to bl_sam_t structure containing alignment

DESCRIPTION
Determine if a VCF call is within a SAM alignment, i.e. on the same chrom and between the start and end positions of the alignment.

RETURN VALUES
true if the call is within the alignment false otherwise

SEE ALSO
bl_vcf_call_downstream_of_alignment(3)