ms-stack.py(1)

SYNOPSIS

ms-stack file.gff3 [file.gff3 ...]

ARGUMENTS
file.gff3   A GFF3 file containing a gene neighborhood

DESCRIPTION
Display the gene neighborhoods of multiple files on top of each other. This is most useful for comparing the gene neighbohood of a particular gene across two or more species. The GFF3 files are generally output from ms-extract, containing a small set of consecutive gene features surrounding a gene of interest.

RETURN VALUES
0 on success, non-zero error codes if a failure occurs

EXAMPLES
ms-stack Hoods/Danio_rerio-jun.gff3 \
    Hoods/Takifugu_rubripes-jun.gff3 Hoods/Xenopus_tropicalis-jun.gff3 \
    Hoods/Mus_musculus-jun.gff3
Danio   si:dkey-239i20.4 plpp6 prdx6 jun caiap si:dkey-86e18.1 faslg
Fugu    unnamed plpp6 prdx6 jun si:dkey-86e18.1 faslg fam20b
Xenopus mysm1 unnamed pan3 jun fggy XB5864909 [provisional:rnf170] hook1
Mouse   Tek Eqtn Mysm1 Jun Fggy Hook1 Cyp2j13

SEE ALSO
ms-extract(1), ms-plot(1)

AUTHOR
J. Bacon