=> Bootstrap dependency digest>=20211023: found digest-20220214
=> Checksum BLAKE2s OK for hmmer-3.0.tar.gz
=> Checksum SHA512 OK for hmmer-3.0.tar.gz
===> Installing dependencies for hmmer-3.0
=> Tool dependency mktools-[0-9]*: found mktools-20220614
=> Tool dependency distcc-[0-9]*: found distcc-3.4
=> Tool dependency cwrappers>=20150314: found cwrappers-20220403
===> Skipping vulnerability checks.
WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found.
WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'.
===> Overriding tools for hmmer-3.0
===> Extracting for hmmer-3.0
===> Patching for hmmer-3.0
=> Applying pkgsrc patches for hmmer-3.0
===> Creating toolchain wrappers for hmmer-3.0
===> Configuring for hmmer-3.0
=> Modifying GNU configure scripts to avoid --recheck
=> Replacing config-guess with pkgsrc versions
=> Replacing config-sub with pkgsrc versions
=> Replacing install-sh with pkgsrc version
configure: Configuring HMMER for your system.
checking build system type... vax--netbsdelf
checking host system type... vax--netbsdelf
configure: Full HMMER source distribution - using full configuration
checking for vax--netbsdelf-gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for C compiler vendor... gnu
checking for the pthreads library -lpthreads... no
checking whether pthreads work without any flags... no
checking whether pthreads work with -Kthread... no
checking whether pthreads work with -kthread... no
checking for the pthreads library -llthread... no
checking whether pthreads work with -pthread... yes
checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE
checking if more special flags are required for pthreads... no
checking for cc_r... gcc
configure: WARNING: It appears your platform will not fully support H3.
configure: WARNING: We'll use the 'dummy' implementation, a slow reference implementation.
checking for vax--netbsdelf-gcc... (cached) gcc
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc accepts -g... (cached) yes
checking for gcc option to accept ISO C89... (cached) none needed
checking how to run the C preprocessor... gcc -E
checking for C compiler vendor... (cached) gnu
checking for gcc option to accept ISO C99... none needed
checking for gcc option to accept ISO Standard C... (cached) none needed
checking for vax--netbsdelf-ranlib... no
checking for ranlib... ranlib
checking for ar... /usr/bin/ar
checking whether your make is GNU make... nope, assuming sysv make.
configure: Activating "dummy" implementation
checking compiler support --start-group... yes
checking for grep that handles long lines and -e... (cached) /usr/bin/grep
checking for egrep... (cached) /usr/bin/egrep
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for sys/types.h... (cached) yes
checking sys/sysctl.h usability... yes
checking sys/sysctl.h presence... yes
checking for sys/sysctl.h... yes
checking for unistd.h... (cached) yes
checking for stdint.h... (cached) yes
checking for inttypes.h... (cached) yes
checking endian.h usability... yes
checking endian.h presence... yes
checking for endian.h... yes
checking whether byte ordering is bigendian... no
checking for uint8_t... yes
checking for uint16_t... yes
checking for uint32_t... yes
checking for uint64_t... yes
checking for off_t... yes
checking for mkstemp... yes
checking for popen... yes
checking for strcasecmp... yes
checking for times... yes
checking for getpid... yes
checking for sysctl... yes
checking for sysconf... yes
checking for ntohs... yes
checking for ntohl... yes
checking for htons... yes
checking for htonl... yes
checking for _LARGEFILE_SOURCE value needed for large files... no
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
configure: creating ./config.status
config.status: creating src/Makefile
config.status: creating testsuite/Makefile
config.status: creating profmark/Makefile
config.status: creating src/impl_dummy/Makefile
config.status: creating easel/miniapps/Makefile
config.status: creating easel/testsuite/Makefile
config.status: creating easel/Makefile
config.status: creating Makefile
config.status: creating src/p7_config.h
config.status: creating easel/esl_config.h
config.status: linking src/impl_dummy to src/impl


HMMER configuration:

     compiler:             gcc -O2 -D_FORTIFY_SOURCE=2  -pthread
     linker:               -Wl,-R/usr/pkg/lib
     libraries:              
     DP implementation:    dummy

configure: WARNING: The "dummy" implementation is a portable ANSI C reference implementation.
configure: WARNING: It is slow, and is not intended for production use.