=> Bootstrap dependency digest>=20211023: found digest-20220214
===> Skipping vulnerability checks.
WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found.
WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'.
===> Building for minimap2-2.24nb1
gcc -c -O2 -mieee -I/usr/include -Wall -Wc++-compat -DHAVE_KALLOC main.c -o main.o
gcc -c -O2 -mieee -I/usr/include -Wall -Wc++-compat -DHAVE_KALLOC kthread.c -o kthread.o
gcc -c -O2 -mieee -I/usr/include -Wall -Wc++-compat -DHAVE_KALLOC kalloc.c -o kalloc.o
gcc -c -O2 -mieee -I/usr/include -Wall -Wc++-compat -DHAVE_KALLOC misc.c -o misc.o
gcc -c -O2 -mieee -I/usr/include -Wall -Wc++-compat -DHAVE_KALLOC bseq.c -o bseq.o
gcc -c -O2 -mieee -I/usr/include -Wall -Wc++-compat -DHAVE_KALLOC sketch.c -o sketch.o
gcc -c -O2 -mieee -I/usr/include -Wall -Wc++-compat -DHAVE_KALLOC sdust.c -o sdust.o
gcc -c -O2 -mieee -I/usr/include -Wall -Wc++-compat -DHAVE_KALLOC options.c -o options.o
gcc -c -O2 -mieee -I/usr/include -Wall -Wc++-compat -DHAVE_KALLOC index.c -o index.o
gcc -c -O2 -mieee -I/usr/include -Wall -Wc++-compat -DHAVE_KALLOC lchain.c -o lchain.o
In file included from /usr/include/ctype.h:100,
from kseq.h:31,
from mmpriv.h:7,
from index.c:14:
index.c: In function 'mm_idx_alt_read':
index.c:648:34: warning: array subscript has type 'char' [-Wchar-subscripts]
648 | for (p = str.s; *p && !isspace(*p); ++p) { }
| ^
index.c: In function 'mm_idx_read_bed':
index.c:696:19: warning: array subscript has type 'char' [-Wchar-subscripts]
696 | if (!isdigit(*q)) break;
| ^
gcc -c -O2 -mieee -I/usr/include -Wall -Wc++-compat -DHAVE_KALLOC align.c -o align.o
gcc -c -O2 -mieee -I/usr/include -Wall -Wc++-compat -DHAVE_KALLOC hit.c -o hit.o
gcc -c -O2 -mieee -I/usr/include -Wall -Wc++-compat -DHAVE_KALLOC seed.c -o seed.o
hit.c: In function 'mm_gen_regs':
hit.c:74:18: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
74 | r = (mm_reg1_t*)calloc(n_u, sizeof(mm_reg1_t));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from hit.c:2:
/usr/include/stdlib.h:109:7: note: in a call to allocation function 'calloc' declared here
109 | void *calloc(size_t, size_t);
| ^~~~~~
gcc -c -O2 -mieee -I/usr/include -Wall -Wc++-compat -DHAVE_KALLOC map.c -o map.o
gcc -c -O2 -mieee -I/usr/include -Wall -Wc++-compat -DHAVE_KALLOC format.c -o format.o
gcc -c -O2 -mieee -I/usr/include -Wall -Wc++-compat -DHAVE_KALLOC pe.c -o pe.o
gcc -c -O2 -mieee -I/usr/include -Wall -Wc++-compat -DHAVE_KALLOC esterr.c -o esterr.o
gcc -c -O2 -mieee -I/usr/include -Wall -Wc++-compat -DHAVE_KALLOC splitidx.c -o splitidx.o
gcc -c -O2 -mieee -I/usr/include -Wall -Wc++-compat -msse2 -DHAVE_KALLOC ksw2_ll_sse.c -o ksw2_ll_sse.o
gcc: error: unrecognized command-line option '-msse2'
gmake: *** [Makefile:63: ksw2_ll_sse.o] Error 1
gmake: *** Waiting for unfinished jobs....
*** Error code 2
Stop.
make[1]: stopped in /usr/pkgsrc/biology/minimap2
*** Error code 1
Stop.
make: stopped in /usr/pkgsrc/biology/minimap2