=> Bootstrap dependency digest>=20211023: found digest-20220214
===> Skipping vulnerability checks.
WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found.
WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'.
===> Building for ncbi-blast+-2.14.1nb2
if test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.flat; then \
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build && /usr/pkg/bin/gmake -f Makefile.flat; \
elif test -s ""; then \
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build && /usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo28270 all_p; \
else \
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build && /usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo28270 all_r; \
fi
gmake[1]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build'
gmake[1]: warning: -j3 forced in submake: resetting jobserver mode.
Build session ID: 8226f3ac-db8f-4b74-bb5e-34ed17608343
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/ctools/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/gui/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/sample/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/ctools/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/ctools/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/internal/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/sample/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/sample/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/internal/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/internal/Makefile.in
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT ctools/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT sample/Makefile
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/gui/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/gui/Makefile.in
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT internal/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/ctools/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT gui/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sample/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/internal/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/gui/Makefile
/usr/pkg/bin/gmake -C corelib -j3 --jobserver-auth=fifo:/tmp//GMfifo22236 all_r || exit 5
gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
gmake[2]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/test/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/jaeger/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/test/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/jaeger/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/jaeger/Makefile.in
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT jaeger/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib/jaeger/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib/test/Makefile
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
/usr/pkg/bin/gmake[4] (Makefile.precompile): Nothing to be done for `all'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib TMPL=corelib -j3 --jobserver-auth=fifo:/tmp//GMfifo17761 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib TMPL=test_mt -j3 --jobserver-auth=fifo:/tmp//GMfifo17761 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: *** No rule to make target '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
NOTE: skipping project "test_boost" due to unmet requirements
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib TMPL=corelib -j3 --jobserver-auth=fifo:/tmp//GMfifo17761 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib TMPL=test_mt -j3 --jobserver-auth=fifo:/tmp//GMfifo17761 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: *** No rule to make target '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
NOTE: skipping project "test_boost" due to unmet requirements
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib TMPL=corelib -j3 --jobserver-auth=fifo:/tmp//GMfifo17761 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_os_unix.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/blob_storage.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ddumpable.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/env_reg.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/metareg.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_config.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_param.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_process.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_safe_static.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_signal.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_stack.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_system.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiapp.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiargs.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiatomic.cpp.
Updating dependency information for ncbicfg.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidbg.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag_p.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidll.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbienv.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiexec.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiexpt.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbifile.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbimempool.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbimtx.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiobj.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbireg.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbistr.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbistre.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbithr.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbitime.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/obj_store.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/plugin_manager.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/plugin_manager_store.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/rwstreambuf.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/stream_utils.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/syslog.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/version.cpp.
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Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_pool_balancer.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_os_unix.cpp -o ncbi_os_unix.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/blob_storage.cpp -o blob_storage.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ddumpable.cpp -o ddumpable.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/env_reg.cpp -o env_reg.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/metareg.cpp -o metareg.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_config.cpp -o ncbi_config.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_param.cpp -o ncbi_param.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_process.cpp -o ncbi_process.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_safe_static.cpp -o ncbi_safe_static.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_signal.cpp -o ncbi_signal.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_stack.cpp -o ncbi_stack.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSI/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp: In static member function 'static void ncbi::CDiagContext::sx_ThreadDataTlsCleanup(ncbi::CDiagContextThreadData*, void*)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp:956:67: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations]
956 | value->GetProperties(CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */
| ^
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp:464:34: note: declared here
464 | NCBI_DEPRECATED TProperties* GetProperties(EGetProperties flag);
| ^~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::SetProperty(const string&, const string&, ncbi::CDiagContext::EPropertyMode)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp:2039:49: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations]
2039 | CDiagContextThreadData::eProp_Create); /* NCBI_FAKE_WARNING */
| ^
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp:1096:1: note: declared here
1096 | CDiagContextThreadData::GetProperties(EGetProperties flag)
| ^~~~~~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp: In member function 'std::string ncbi::CDiagContext::GetProperty(const string&, ncbi::CDiagContext::EPropertyMode) const':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp:2102:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations]
2102 | CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */
| ^
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp:1096:1: note: declared here
1096 | CDiagContextThreadData::GetProperties(EGetProperties flag)
| ^~~~~~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::DeleteProperty(const string&, ncbi::CDiagContext::EPropertyMode)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp:2127:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations]
2127 | CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */
| ^
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp:1096:1: note: declared here
1096 | CDiagContextThreadData::GetProperties(EGetProperties flag)
| ^~~~~~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::PrintProperties()':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp:2159:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations]
2159 | CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */
| ^
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp:1096:1: note: declared here
1096 | CDiagContextThreadData::GetProperties(EGetProperties flag)
| ^~~~~~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp: In static member function 'static void ncbi::CDiagContext::SetupDiag(ncbi::EAppDiagStream, ncbi::CNcbiRegistry*, ncbi::EDiagCollectMessages, const char*)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp:3755:48: warning: 'virtual bool ncbi::CNcbiApplicationAPI::SetupDiag_AppSpecific()' is deprecated [-Wdeprecated-declarations]
3755 | app->SetupDiag_AppSpecific(); /* NCBI_FAKE_WARNING */
| ^
In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbi_param.hpp:41,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbifile.hpp:55,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp:41:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiapp_api.hpp:393:34: note: declared here
393 | NCBI_DEPRECATED virtual bool SetupDiag_AppSpecific(void);
| ^~~~~~~~~~~~~~~~~~~~~
ON_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_system.cpp -o ncbi_system.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiapp.cpp -o ncbiapp.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiargs.cpp -o ncbiargs.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiatomic.cpp -o ncbiatomic.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 ncbicfg.c -o ncbicfg.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidbg.cpp -o ncbidbg.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp -o ncbidiag.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag_p.cpp -o ncbidiag_p.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidll.cpp -o ncbidll.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbienv.cpp -o ncbienv.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiexec.cpp -o ncbiexec.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiexpt.cpp -o ncbiexpt.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr//tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbifile.cpp: In function 'void ncbi::s_GetFileSystemInfo(const string&, ncbi::CFileUtil::SFileSystemInfo*, ncbi::TFileSystemInfo)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbifile.cpp:5168:10: warning: variable 'need_name_max' set but not used [-Wunused-but-set-variable]
5168 | bool need_name_max = true;
| ^~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbistr.cpp: In static member function 'static ncbi::SIZE_TYPE ncbi::NStr::DoubleToString_Ecvt(double, unsigned int, char*, ncbi::SIZE_TYPE, int*, int*)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbistr.cpp:2656:20: warning: 'char* strncpy(char*, const char*, size_t)' output may be truncated copying between 0 and 15 bytes from a string of length 31 [-Wstringop-truncation]
2656 | strncpy(buffer,digits,digits_len);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbifile.cpp -o ncbifile.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbimempool.cpp -o ncbimempool.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbimtx.cpp -o ncbimtx.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiobj.cpp -o ncbiobj.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbireg.cpp -o ncbireg.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbistr.cpp -o ncbistr.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbistre.cpp -o ncbistre.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbithr.cpp -o ncbithr.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbitime.cpp -o ncbitime.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/obj_store.cpp -o obj_store.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/plugin_manager.cpp -o plugin_manager.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/plugin_manager_store.cpp -o plugin_manager_store.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/rwstreambuf.cpp -o rwstreambuf.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/stream_utils.cpp -o stream_utils.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/syslog.cpp -o syslog.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/version.cpp -o version.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/request_ctx.cpp -o request_ctx.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/request_control.cpp -o request_control.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/expr.cpp -o expr.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_strings.c -o ncbi_strings.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/resource_info.cpp -o resource_info.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/interprocess_lock.cpp -o interprocess_lock.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_autoinit.cpp -o ncbi_autoinit.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/perf_log.cpp -o perf_log.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_toolkit.cpp -o ncbi_toolkit.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbierror.cpp -o ncbierror.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_url.cpp -o ncbi_url.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_cookies.cpp -o ncbi_cookies.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/guard.cpp -o guard.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_message.cpp -o ncbi_message.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/request_status.cpp -o request_status.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_fast.cpp -o ncbi_fast.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_dbsvcmapper.cpp -o ncbi_dbsvcmapper.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_pool_balancer.cpp -o ncbi_pool_balancer.o
/bin/rm -f libxncbi.a .libxncbi.a.stamp
ar cr libxncbi.a ncbi_os_unix.o blob_storage.o ddumpable.o env_reg.o metareg.o ncbi_config.o ncbi_param.o ncbi_process.o ncbi_safe_static.o ncbi_signal.o ncbi_stack.o ncbi_system.o ncbiapp.o ncbiargs.o ncbiatomic.o ncbicfg.o ncbidbg.o ncbidiag.o ncbidiag_p.o ncbidll.o ncbienv.o ncbiexec.o ncbiexpt.o ncbifile.o ncbimempool.o ncbimtx.o ncbiobj.o ncbireg.o ncbistr.o ncbistre.o ncbithr.o ncbitime.o obj_store.o plugin_manager.o plugin_manager_store.o rwstreambuf.o stream_utils.o syslog.o version.o request_ctx.o request_control.o expr.o ncbi_strings.o resource_info.o interprocess_lock.o ncbi_autoinit.o perf_log.o ncbi_toolkit.o ncbierror.o ncbi_url.o ncbi_cookies.o guard.o ncbi_message.o request_status.o ncbi_fast.o ncbi_dbsvcmapper.o ncbi_pool_balancer.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxncbi.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxncbi.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxncbi.a
/bin/ln -f .xncbi.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xncbi.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib TMPL=test_mt -j3 --jobserver-auth=fifo:/tmp//GMfifo17761 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/test_mt.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/corelib/test_mt.cpp -o test_mt.o
/bin/rm -f libtest_mt.a .libtest_mt.a.stamp
ar cr libtest_mt.a test_mt.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtest_mt.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libtest_mt.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libtest_mt.a
/bin/ln -f .test_mt.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.test_mt.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: *** No rule to make target '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
NOTE: skipping project "test_boost" due to unmet requirements
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
/usr/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/tmp//GMfifo28551 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib/test'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib/test'
/usr/pkg/bin/gmake -C jaeger -j3 --jobserver-auth=fifo:/tmp//GMfifo28551 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib/jaeger'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib/jaeger'
gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib'
/usr/pkg/bin/gmake -C util -j3 --jobserver-auth=fifo:/tmp//GMfifo22236 all_r || exit 5
gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util'
gmake[2]: warning: -j3 forced in submake: resetting jobserver mode.
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/diff/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/image/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/qparse/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/diff/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/diff/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/image/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/image/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/test/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/demo/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/test/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/demo/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/demo/Makefile.in
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT diff/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT image/Makefile
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/qparse/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/qparse/Makefile.in
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/test/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT demo/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/image/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/diff/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT qparse/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/demo/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/qparse/Makefile
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util'
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util TMPL=util -j3 --jobserver-auth=fifo:/tmp//GMfifo2418 export-headers
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util'
gmake[3]: Nothing to be done for 'export-headers'.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util'
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util'
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util TMPL=util -j3 --jobserver-auth=fifo:/tmp//GMfifo2418 flag-stamps
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util'
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util'
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util TMPL=util -j3 --jobserver-auth=fifo:/tmp//GMfifo2418 all
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/random_gen.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/utf8.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/checksum.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/checksum_cityhash.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/checksum_farmhash.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/bytesrc.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/strbuffer.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/itree.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/smalldns.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/thread_pool_old.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/ddump_viewer.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/strsearch.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/logrotate.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/format_guess.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/ascii85.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/md5.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/file_obsolete.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/unicode.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/dictionary.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/dictionary_util.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/thread_nonstop.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/sgml_entity.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/static_set.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/transmissionrw.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/miscmath.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/mutex_pool.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/ncbi_cache.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/line_reader.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/util_exception.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/uttp.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/multi_writer.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/itransaction.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/thread_pool.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/thread_pool_ctrl.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/scheduler.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/distribution.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/rangelist.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/util_misc.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/histogram_binning.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/table_printer.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/retry_ctx.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/stream_source.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/file_manifest.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/cache_async.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/multipattern_search.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/crc32_sse.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/random_gen.cpp -o random_gen.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/utf8.cpp -o utf8.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/checksum.cpp -o checksum.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/checksum_cityhash.cpp -o checksum_cityhash.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/checksum_farmhash.cpp -o checksum_farmhash.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/bytesrc.cpp -o bytesrc.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/strbuffer.cpp -o strbuffer.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/itree.cpp -o itree.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/smalldns.cpp -o smalldns.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/thread_pool_old.cpp -o thread_pool_old.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/ddump_viewer.cpp -o ddump_viewer.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/strsearch.cpp -o strsearch.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/logrotate.cpp -o logrotate.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/format_guess.cpp /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/format_guess.cpp: In member function 'bool ncbi::CFormatGuess::TestFormatNewick(ncbi::CFormatGuess::EMode)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/format_guess.cpp:1119:24: warning: 'char* strncpy(char*, const char*, size_t)' accessing 12 bytes at offsets 0 and [0, 16397] may overlap up to 12 bytes at offset [0, 11] [-Wrestrict]
1119 | strncpy(test_buf, test_buf + num_read, check_size);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-o format_guess.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/ascii85.cpp -o ascii85.o
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/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/dictionary.cpp -o dictionary.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/dictionary_util.cpp -o dictionary_util.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/thread_nonstop.cpp -o thread_nonstop.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/sgml_entity.cpp -o sgml_entity.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/static_set.cpp -o static_set.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/transmissionrw.cpp -o transmissionrw.o
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/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/line_reader.cpp -o line_reader.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/util_exception.cpp -o util_exception.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/uttp.cpp -o uttp.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/multi_writer.cpp -o multi_writer.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/itransaction.cpp -o itransaction.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/thread_pool.cpp -o thread_pool.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/thread_pool_ctrl.cpp -o thread_pool_ctrl.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/scheduler.cpp -o scheduler.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/distribution.cpp -o distribution.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/rangelist.cpp -o rangelist.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/util_misc.cpp -o util_misc.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/histogram_binning.cpp -o histogram_binning.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/table_printer.cpp -o table_printer.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/retry_ctx.cpp -o retry_ctx.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/stream_source.cpp -o stream_source.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/file_manifest.cpp -o file_manifest.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/cache_async.cpp -o cache_async.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/multipattern_search.cpp -o multipattern_search.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/crc32_sse.cpp -o crc32_sse.o
/bin/rm -f libxutil.a .libxutil.a.stamp
ar cr libxutil.a random_gen.o utf8.o checksum.o checksum_cityhash.o checksum_farmhash.o bytesrc.o strbuffer.o itree.o smalldns.o thread_pool_old.o ddump_viewer.o strsearch.o logrotate.o format_guess.o ascii85.o md5.o file_obsolete.o unicode.o dictionary.o dictionary_util.o thread_nonstop.o sgml_entity.o static_set.o transmissionrw.o miscmath.o mutex_pool.o ncbi_cache.o line_reader.o util_exception.o uttp.o multi_writer.o itransaction.o thread_pool.o thread_pool_ctrl.o scheduler.o distribution.o rangelist.o util_misc.o histogram_binning.o table_printer.o retry_ctx.o stream_source.o file_manifest.o cache_async.o multipattern_search.o crc32_sse.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxutil.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxutil.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxutil.a
/bin/ln -f .xutil.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xutil.dep
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util'
/usr/pkg/bin/gmake -C regexp -j3 --jobserver-auth=fifo:/tmp//GMfifo2418 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/regexp'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
NOTE: Skipping project regexp due to unmet requirements:
LocalPCRE
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/regexp'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/regexp'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/regexp'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/regexp'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
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/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/regexp TMPL=regexp -j3 --jobserver-auth=fifo:/tmp//GMfifo2584 mark-as-disabled
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/regexp'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/regexp'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/regexp'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/regexp'
/usr/pkg/bin/gmake -C xregexp -j3 --jobserver-auth=fifo:/tmp//GMfifo2418 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/xregexp TMPL=xregexp -j3 --jobserver-auth=fifo:/tmp//GMfifo14902 export-headers
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/xregexp TMPL=xregexp_template_tester -j3 --jobserver-auth=fifo:/tmp//GMfifo14902 export-headers
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/xregexp TMPL=xregexp -j3 --jobserver-auth=fifo:/tmp//GMfifo14902 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/xregexp TMPL=xregexp_template_tester -j3 --jobserver-auth=fifo:/tmp//GMfifo14902 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/xregexp TMPL=xregexp -j3 --jobserver-auth=fifo:/tmp//GMfifo14902 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/regexp.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/arg_regexp.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/mask_regexp.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/convert_dates_iso8601.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -I/usr/pkg/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/regexp.cpp -o regexp.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -I/usr/pkg/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/arg_regexp.cpp -o arg_regexp.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -I/usr/pkg/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/mask_regexp.cpp -o mask_regexp.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -I/usr/pkg/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/convert_dates_iso8601.cpp -o convert_dates_iso8601.o
/bin/rm -f libxregexp.a .libxregexp.a.stamp
ar cr libxregexp.a regexp.o arg_regexp.o mask_regexp.o convert_dates_iso8601.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxregexp.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxregexp.a
/bin/ln -f .xregexp.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xregexp.dep
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/xregexp TMPL=xregexp_template_tester -j3 --jobserver-auth=fifo:/tmp//GMfifo14902 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/regexp_template_tester.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/regexp_template_tester.cpp -o regexp_template_tester.o
/bin/rm -f libxregexp_template_tester.a .libxregexp_template_tester.a.stamp
ar cr libxregexp_template_tester.a regexp_template_tester.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp_template_tester.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxregexp_template_tester.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxregexp_template_tester.a
/bin/ln -f .xregexp_template_tester.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xregexp_template_tester.dep
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp'
/usr/pkg/bin/gmake -C compress -j3 --jobserver-auth=fifo:/tmp//GMfifo2418 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
/usr/pkg/bin/gmake -C bzip2 -j3 --jobserver-auth=fifo:/tmp//GMfifo13371 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/bzip2'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
NOTE: Skipping project bzip2 due to unmet requirements:
LocalBZ2
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/bzip2'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/bzip2'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/bzip2'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/bzip2'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/bzip2'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/compress/bzip2 TMPL=bzip2 -j3 --jobserver-auth=fifo:/tmp//GMfifo6771 mark-as-disabled
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/bzip2'
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/bzip2'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/bzip2'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/bzip2'
/usr/pkg/bin/gmake -C zlib -j3 --jobserver-auth=fifo:/tmp//GMfifo13371 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/zlib'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
NOTE: Skipping project zlib due to unmet requirements:
LocalZ
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/zlib'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/zlib'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/zlib'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/zlib'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/zlib'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/compress/zlib TMPL=zlib -j3 --jobserver-auth=fifo:/tmp//GMfifo3212 mark-as-disabled
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/zlib'
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/zlib'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/zlib'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/zlib'
/usr/pkg/bin/gmake -C api -j3 --jobserver-auth=fifo:/tmp//GMfifo13371 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/compress/api TMPL=compress -j3 --jobserver-auth=fifo:/tmp//GMfifo13600 export-headers
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/compress/api TMPL=compress -j3 --jobserver-auth=fifo:/tmp//GMfifo13600 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/compress/api TMPL=compress -j3 --jobserver-auth=fifo:/tmp//GMfifo13600 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/compress.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/streambuf.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/stream.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/stream_util.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/bzip2.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/lzo.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/zlib.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/zstd.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/reader_zlib.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/tar.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/archive.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/archive_.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/archive_zip.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/compress.cpp -o compress.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/stream.cpp -o stream.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/streambuf.cpp -o streambuf.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/stream_util.cpp -o stream_util.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/bzip2.cpp -o bzip2.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/lzo.cpp -o lzo.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/zlib.cpp -o zlib.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/zstd.cpp -o zstd.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRIn file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/archive_zip.cpp:61:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/miniz/miniz.c:3098:118: note: '#pragma message: Using fopen, ftello, fseeko, stat() etc. path for file I/O - this path may not support large files.'
3098 | #pragma message("Using fopen, ftello, fseeko, stat() etc. path for file I/O - this path may not support large files.")
| ^
ANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/reader_zlib.cpp -o reader_zlib.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/tar.cpp -o tar.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/archive.cpp -o archive.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/archive_.cpp -o archive_.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/archive_zip.cpp -o archive_zip.o
/bin/rm -f libxcompress.a .libxcompress.a.stamp
ar cr libxcompress.a compress.o stream.o streambuf.o stream_util.o bzip2.o lzo.o zlib.o zstd.o reader_zlib.o tar.o archive.o archive_.o archive_zip.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcompress.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxcompress.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxcompress.a
/bin/ln -f .xcompress.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xcompress.dep
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress'
/usr/pkg/bin/gmake -C diff -j3 --jobserver-auth=fifo:/tmp//GMfifo2418 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/diff'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/diff'
/usr/pkg/bin/gmake -C image -j3 --jobserver-auth=fifo:/tmp//GMfifo2418 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/image'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/image'
/usr/pkg/bin/gmake -C tables -j3 --jobserver-auth=fifo:/tmp//GMfifo2418 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/tables/test/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/tables/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/tables/test/Makefile.in
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables/test/Makefile
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/tables TMPL=tables -j3 --jobserver-auth=fifo:/tmp//GMfifo24807 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/tables TMPL=tables -j3 --jobserver-auth=fifo:/tmp//GMfifo24807 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/tables TMPL=tables -j3 --jobserver-auth=fifo:/tmp//GMfifo24807 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/tables/raw_scoremat.c.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/tables/raw_scoremat.c -o raw_scoremat.o
/bin/rm -f libtables.a .libtables.a.stamp
ar cr libtables.a raw_scoremat.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtables.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libtables.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libtables.a
/bin/ln -f .tables.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.tables.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables'
/usr/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/tmp//GMfifo24807 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables/test'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables/test'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables'
/usr/pkg/bin/gmake -C sequtil -j3 --jobserver-auth=fifo:/tmp//GMfifo2418 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/sequtil TMPL=sequtil -j3 --jobserver-auth=fifo:/tmp//GMfifo25799 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/sequtil TMPL=sequtil -j3 --jobserver-auth=fifo:/tmp//GMfifo25799 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/sequtil TMPL=sequtil -j3 --jobserver-auth=fifo:/tmp//GMfifo25799 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_convert.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_manip.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_tables.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_shared.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil.cpp -o sequtil.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_convert.cpp -o sequtil_convert.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp -o sequtil_convert_imp.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_manip.cpp -o sequtil_manip.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_tables.cpp -o sequtil_tables.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_shared.cpp -o sequtil_shared.o
/bin/rm -f libsequtil.a .libsequtil.a.stamp
ar cr libsequtil.a sequtil.o sequtil_convert.o sequtil_convert_imp.o sequtil_manip.o sequtil_tables.o sequtil_shared.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsequtil.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libsequtil.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libsequtil.a
/bin/ln -f .sequtil.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.sequtil.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil'
/usr/pkg/bin/gmake -C bitset -j3 --jobserver-auth=fifo:/tmp//GMfifo2418 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/bitset'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/bitset/test/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/bitset/demo/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/bitset/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/bitset/test/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/bitset/demo/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/bitset/demo/Makefile.in
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT demo/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/bitset/demo/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/bitset/test/Makefile
/usr/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/tmp//GMfifo3633 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/bitset/test'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/bitset/test'
/usr/pkg/bin/gmake -C demo -j3 --jobserver-auth=fifo:/tmp//GMfifo3633 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/bitset/demo'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/bitset/demo'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/bitset'
/usr/pkg/bin/gmake -C qparse -j3 --jobserver-auth=fifo:/tmp//GMfifo2418 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/qparse'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/qparse'
/usr/pkg/bin/gmake -C lmdb -j3 --jobserver-auth=fifo:/tmp//GMfifo2418 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
NOTE: Skipping project lmdb due to unmet requirements:
LocalLMDB
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: *** No rule to make target '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/LocalLMDB.enabled', needed by 'requirements'. Stop.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb'
NOTE: skipping project "lmdb" due to unmet requirements
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb'
/usr/pkg/bin/gmake -C lmdbxx -j3 --jobserver-auth=fifo:/tmp//GMfifo2418 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/lmdbxx TMPL=lmdbxx_sample -j3 --jobserver-auth=fifo:/tmp//GMfifo15486 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/lmdbxx TMPL=lmdbxx_sample -j3 --jobserver-auth=fifo:/tmp//GMfifo15486 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/lmdbxx/example.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/util/lmdbxx -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=lmdbxx_sample -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/lmdbxx/example.cpp -o example.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 example.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lxncbi -llmdb -lpthread -lm -lpthread -o lmdbxx_sample
strip lmdbxx_sample
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f lmdbxx_sample /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin
/bin/ln -f lmdbxx_sample /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/lmdbxx_sample
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx'
/usr/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/tmp//GMfifo2418 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/test'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/test'
/usr/pkg/bin/gmake -C demo -j3 --jobserver-auth=fifo:/tmp//GMfifo2418 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/demo'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/demo'
/usr/pkg/bin/gmake -C profile -j3 --jobserver-auth=fifo:/tmp//GMfifo2418 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/profile TMPL=utrtprof -j3 --jobserver-auth=fifo:/tmp//GMfifo13741 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/profile TMPL=utrtprof -j3 --jobserver-auth=fifo:/tmp//GMfifo13741 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/profile TMPL=utrtprof -j3 --jobserver-auth=fifo:/tmp//GMfifo13741 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/profile/rtprofile.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/util/profile/rtprofile.cpp -o rtprofile.o
/bin/rm -f libutrtprof.a .libutrtprof.a.stamp
ar cr libutrtprof.a rtprofile.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libutrtprof.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libutrtprof.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libutrtprof.a
/bin/ln -f .utrtprof.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.utrtprof.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile'
gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util'
/usr/pkg/bin/gmake -C connect -j3 --jobserver-auth=fifo:/tmp//GMfifo22236 all_r || exit 5
gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[2]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/test/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/test/Makefile.in
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/test/Makefile
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=connssl -j3 --jobserver-auth=fifo:/tmp//GMfifo16883 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=connect -j3 --jobserver-auth=fifo:/tmp//GMfifo16883 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xxconnect -j3 --jobserver-auth=fifo:/tmp//GMfifo16883 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xconnect -j3 --jobserver-auth=fifo:/tmp//GMfifo16883 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: *** No rule to make target '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/LIBUV.enabled', needed by 'requirements'. Stop.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
NOTE: skipping project "xxconnect2" due to unmet requirements
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xthrserv -j3 --jobserver-auth=fifo:/tmp//GMfifo16883 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=connssl -j3 --jobserver-auth=fifo:/tmp//GMfifo16883 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=connect -j3 --jobserver-auth=fifo:/tmp//GMfifo16883 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xxconnect -j3 --jobserver-auth=fifo:/tmp//GMfifo16883 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xconnect -j3 --jobserver-auth=fifo:/tmp//GMfifo16883 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: *** No rule to make target '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/LIBUV.enabled', needed by 'requirements'. Stop.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
NOTE: skipping project "xxconnect2" due to unmet requirements
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xthrserv -j3 --jobserver-auth=fifo:/tmp//GMfifo16883 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=connssl -j3 --jobserver-auth=fifo:/tmp//GMfifo16883 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
/bin/mkdir -p mbedtls
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_mbedtls.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_gnutls.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_tls.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/aes.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/aesni.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/arc4.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/aria.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/asn1parse.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/asn1write.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/base64.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/bignum.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/blowfish.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/camellia.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ccm.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/chacha20.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/chachapoly.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/cipher.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/cipher_wrap.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/cmac.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/constant_time.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ctr_drbg.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/des.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/dhm.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ecdh.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ecdsa.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ecjpake.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ecp.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ecp_curves.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/entropy.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/entropy_poll.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/error.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/gcm.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/havege.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/hkdf.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/hmac_drbg.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/md.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/md2.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/md4.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/mbedtls_md5.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/memory_buffer_alloc.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/mps_reader.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/mps_trace.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/nist_kw.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/oid.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/padlock.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/pem.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/pk.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/pk_wrap.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/pkcs12.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/pkcs5.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/pkparse.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/pkwrite.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/platform.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/platform_util.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/poly1305.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_aead.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_cipher.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_client.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_driver_wrappers.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_ecp.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_hash.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_mac.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_rsa.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_se.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_slot_management.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_storage.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_its_file.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ripemd160.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/rsa.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/rsa_internal.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/sha1.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/sha256.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/sha512.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/threading.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/timing.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/mbedtls_version.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/version_features.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/xtea.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/certs.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/pkcs11.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/x509.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/x509_create.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/x509_crl.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/x509_crt.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/x509_csr.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/x509write_crt.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/x509write_csr.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/debug.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/net_sockets.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_cache.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_ciphersuites.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_cli.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_cookie.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_srv.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_msg.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_ticket.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_tls.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_tls13_keys.c.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_gnutls.c -o ncbi_gnutls.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_mbedtls.c -o ncbi_mbedtls.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_tls.c -o ncbi_tls.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/aes.c -o mbedtls/aes.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/aesni.c -o mbedtls/aesni.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/arc4.c -o mbedtls/arc4.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/aria.c -o mbedtls/aria.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/asn1parse.c -o mbedtls/asn1parse.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/asn1write.c -o mbedtls/asn1write.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/base64.c -o mbedtls/base64.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/bignum.c -o mbedtls/bignum.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/blowfish.c -o mbedtls/blowfish.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/camellia.c -o mbedtls/camellia.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ccm.c -o mbedtls/ccm.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/chacha20.c -o mbedtls/chacha20.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/chachapoly.c -o mbedtls/chachapoly.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/cipher.c -o mbedtls/cipher.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/cipher_wrap.c -o mbedtls/cipher_wrap.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/cmac.c -o mbedtls/cmac.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/constant_time.c -o mbedtls/constant_time.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ctr_drbg.c -o mbedtls/ctr_drbg.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/des.c -o mbedtls/des.o
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/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/pkcs12.c -o mbedtls/pkcs12.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/pkcs5.c -o mbedtls/pkcs5.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/pkparse.c -o mbedtls/pkparse.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/pkwrite.c -o mbedtls/pkwrite.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/platform.c -o mbedtls/platform.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/platform_util.c -o mbedtls/platform_util.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/poly1305.c -o mbedtls/poly1305.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto.c -o mbedtls/psa_crypto.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_aead.c -o mbedtls/psa_crypto_aead.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_cipher.c -o mbedtls/psa_crypto_cipher.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_client.c -o mbedtls/psa_crypto_client.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_driver_wrappers.c -o mbedtls/psa_crypto_driver_wrappers.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_ecp.c -o mbedtls/psa_crypto_ecp.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_hash.c -o mbedtls/psa_crypto_hash.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_mac.c -o mbedtls/psa_crypto_mac.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_rsa.c -o mbedtls/psa_crypto_rsa.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_se.c -o mbedtls/psa_crypto_se.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_slot_management.c -o mbedtls/psa_crypto_slot_management.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_storage.c -o mbedtls/psa_crypto_storage.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_its_file.c -o mbedtls/psa_its_file.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ripemd160.c -o mbedtls/ripemd160.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/rsa.c -o mbedtls/rsa.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/rsa_internal.c -o mbedtls/rsa_internal.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/sha1.c -o mbedtls/sha1.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/sha256.c -o mbedtls/sha256.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/sha512.c -o mbedtls/sha512.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/threading.c -o mbedtls/threading.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/timing.c -o mbedtls/timing.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/mbedtls_version.c -o mbedtls/mbedtls_version.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/version_features.c -o mbedtls/version_features.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/xtea.c -o mbedtls/xtea.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/certs.c -o mbedtls/certs.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/pkcs11.c -o mbedtls/pkcs11.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/x509.c -o mbedtls/x509.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/x509_create.c -o mbedtls/x509_create.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/x509_crl.c -o mbedtls/x509_crl.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/x509_crt.c -o mbedtls/x509_crt.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/x509_csr.c -o mbedtls/x509_csr.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/x509write_crt.c -o mbedtls/x509write_crt.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/x509write_csr.c -o mbedtls/x509write_csr.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/debug.c -o mbedtls/debug.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/net_sockets.c -o mbedtls/net_sockets.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_cache.c -o mbedtls/ssl_cache.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_ciphersuites.c -o mbedtls/ssl_ciphersuites.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_cli.c -o mbedtls/ssl_cli.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_cookie.c -o mbedtls/ssl_cookie.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_msg.c -o mbedtls/ssl_msg.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_srv.c -o mbedtls/ssl_srv.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_ticket.c -o mbedtls/ssl_ticket.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_tls.c -o mbedtls/ssl_tls.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_tls13_keys.c -o mbedtls/ssl_tls13_keys.o
/bin/rm -f libconnssl.a .libconnssl.a.stamp
ar cr libconnssl.a ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o mbedtls/aes.o mbedtls/aesni.o mbedtls/arc4.o mbedtls/aria.o mbedtls/asn1parse.o mbedtls/asn1write.o mbedtls/base64.o mbedtls/bignum.o mbedtls/blowfish.o mbedtls/camellia.o mbedtls/ccm.o mbedtls/chacha20.o mbedtls/chachapoly.o mbedtls/cipher.o mbedtls/cipher_wrap.o mbedtls/cmac.o mbedtls/constant_time.o mbedtls/ctr_drbg.o mbedtls/des.o mbedtls/dhm.o mbedtls/ecdh.o mbedtls/ecdsa.o mbedtls/ecjpake.o mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hkdf.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/memory_buffer_alloc.o mbedtls/mps_reader.o mbedtls/mps_trace.o mbedtls/nist_kw.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/platform_util.o mbedtls/poly1305.o mbedtls/psa_crypto.o mbedtls/psa_crypto_aead.o mbedtls/psa_crypto_cipher.o mbedtls/psa_crypto_client.o mbedtls/psa_crypto_driver_wrappers.o mbedtls/psa_crypto_ecp.o mbedtls/psa_crypto_hash.o mbedtls/psa_crypto_mac.o mbedtls/psa_crypto_rsa.o mbedtls/psa_crypto_se.o mbedtls/psa_crypto_slot_management.o mbedtls/psa_crypto_storage.o mbedtls/psa_its_file.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/rsa_internal.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_msg.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o mbedtls/ssl_tls13_keys.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnssl.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libconnssl.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libconnssl.a
/bin/ln -f .connssl.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.connssl.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=connect -j3 --jobserver-auth=fifo:/tmp//GMfifo16883 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsm.c.
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Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_version.c.
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Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_namerd.c.
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Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbdns.c.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsm.c -o ncbi_lbsm.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsm_ipc.c -o ncbi_lbsm_ipc.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_ansi_ext.c -o ncbi_ansi_ext.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_types.c -o ncbi_types.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_core.c -o ncbi_core.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_priv.c -o ncbi_priv.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_util.c -o ncbi_util.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_buffer.c -o ncbi_buffer.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket.c -o ncbi_socket.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_connector.c -o ncbi_connector.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_connection.c -o ncbi_connection.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_connutil.c -o ncbi_connutil.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_ipv6.c -o ncbi_ipv6.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_server_info.c -o ncbi_server_info.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_host_info.c -o ncbi_host_info.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/pyth/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_http_connector.c: In function 'x_Authenticate':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_http_connector.c:261:18: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
261 | s[userlen++] = ':';
| ~~~~~~~~~~~~~^~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_http_connector.c:206:10: note: at offset -1 to object 'buf' with size 458 declared here
206 | char buf[80 + (CONN_USER_LEN + CONN_PASS_LEN)*3], *s;
| ^~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_http_connector.c:261:18: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
261 | s[userlen++] = ':';
| ~~~~~~~~~~~~~^~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_http_connector.c:206:10: note: at offset -1 to object 'buf' with size 458 declared here
206 | char buf[80 + (CONN_USER_LEN + CONN_PASS_LEN)*3], *s;
| ^~~
on3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_service.c -o ncbi_service.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_sendmail.c -o ncbi_sendmail.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_base64.c -o ncbi_base64.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_heapmgr.c -o ncbi_heapmgr.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lb.c -o ncbi_lb.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket_connector.c -o ncbi_socket_connector.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_file_connector.c -o ncbi_file_connector.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_http_connector.c -o ncbi_http_connector.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_memory_connector.c -o ncbi_memory_connector.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_service_connector.c -o ncbi_service_connector.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_ftp_connector.c -o ncbi_ftp_connector.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_http_connector.c: In function 's_ReadData.constprop':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_http_connector.c:1382:35: warning: 'err' may be used uninitialized in this function [-Wmaybe-uninitialized]
1382 | !str ? (int) strlen(err) : (int)(size - (first ? 2 : 4)),
| ^~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_http_connector.c:1360:21: note: 'err' was declared here
1360 | const char* err;
| ^~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_ftp_connector.c: In function 'x_FTPXfer':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_ftp_connector.c:963:11: warning: array subscript -1 is outside array bounds of 'char[128]' [-Warray-bounds]
963 | q = c > buf ? c[-1] : '\0';
| ~~^~~~~~~~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_ftp_connector.c:950:10: note: while referencing 'buf'
950 | char buf[128];
| ^~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsmd.c: In function 's_GetNextInfo':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsmd.c:696:51: warning: taking address of packed member of 'struct <anonymous>' may result in an unaligned pointer value [-Waddress-of-packed-member]
696 | || SERV_EqualInfo(skip, &svc->info))) {
| ^~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsmd.c:699:45: warning: taking address of packed member of 'struct <anonymous>' may result in an unaligned pointer value [-Waddress-of-packed-member]
699 | } else if (SERV_EqualInfo(skip, &svc->info))
| ^~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsmd.c:850:31: warning: taking address of packed member of 'struct <anonymous>' may result in an unaligned pointer value [-Waddress-of-packed-member]
850 | cand[n].cand.info = &svc->info;
| ^~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsmd.c:938:37: warning: taking address of packed member of 'struct <anonymous>' may result in an unaligned pointer value [-Waddress-of-packed-member]
938 | if ((info = SERV_CopyInfoEx(&svc->info, name)) != 0) {
| ^~~~~~~~~~
In file included from /usr/include/stdio.h:595,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_util.h:69,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_priv.h:62,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_once.h:40,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbdns.c:36:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbdns.c: In function 'x_DumpRR':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbdns.c:301:24: warning: format '%u' expects argument of type 'unsigned int', but argument 5 has type 'long unsigned int' [-Wformat=]
301 | sprintf(szbuf, " (%u)", ns_rr_rdlen(*rr));
| ^~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbdns.c:301:28: note: format string is defined here
301 | sprintf(szbuf, " (%u)", ns_rr_rdlen(*rr));
| ~^
| |
| unsigned int
| %lu
O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_version.c -o ncbi_version.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_iprange.c -o ncbi_iprange.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_local.c -o ncbi_local.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsmd.c -o ncbi_lbsmd.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_dispd.c -o ncbi_dispd.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_linkerd.c -o ncbi_linkerd.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_namerd.c -o ncbi_namerd.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/parson.c -o parson.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_localip.c -o ncbi_localip.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbdns.c -o ncbi_lbdns.o
/bin/rm -f libconnect.a .libconnect.a.stamp
ar cr libconnect.a ncbi_lbsm.o ncbi_lbsm_ipc.o ncbi_ansi_ext.o ncbi_types.o ncbi_core.o ncbi_priv.o ncbi_util.o ncbi_buffer.o ncbi_socket.o ncbi_connector.o ncbi_connection.o ncbi_connutil.o ncbi_ipv6.o ncbi_server_info.o ncbi_host_info.o ncbi_service.o ncbi_sendmail.o ncbi_base64.o ncbi_heapmgr.o ncbi_lb.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_service_connector.o ncbi_ftp_connector.o ncbi_version.o ncbi_iprange.o ncbi_local.o ncbi_lbsmd.o ncbi_dispd.o ncbi_linkerd.o ncbi_namerd.o parson.o ncbi_localip.o ncbi_lbdns.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnect.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libconnect.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libconnect.a
/bin/ln -f .connect.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.connect.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xxconnect -j3 --jobserver-auth=fifo:/tmp//GMfifo16883 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_core_cxx.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket_cxx.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/email_diag_handler.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_conn_streambuf.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_conn_stream.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_conn_test.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_misc.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_namedpipe.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_namedpipe_connector.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_pipe.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_pipe_connector.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_conn_reader_writer.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_userhost.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_http_session.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_monkey.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_service_cxx.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_localip_cxx.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_blowfish.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_usage_report.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/connect_misc.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket_cxx.cpp -o ncbi_socket_cxx.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_core_cxx.cpp -o ncbi_core_cxx.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/email_diag_handler.cpp -o email_diag_handler.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_conn_streambuf.cpp -o ncbi_conn_streambuf.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_conn_stream.cpp -o ncbi_conn_stream.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_conn_test.cpp -o ncbi_conn_test.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_misc.cpp -o ncbi_misc.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_namedpipe.cpp -o ncbi_namedpipe.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_namedpipe_connector.cpp -o ncbi_namedpipe_connector.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_pipe.cpp -o ncbi_pipe.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_pipe_connector.cpp -o ncbi_pipe_connector.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_conn_reader_writer.cpp -o ncbi_conn_reader_writer.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_userhost.cpp -o ncbi_userhost.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_http_session.cpp -o ncbi_http_session.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_monkey.cpp -o ncbi_monkey.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_service_cxx.cpp -o ncbi_service_cxx.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_localip_cxx.cpp -o ncbi_localip_cxx.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_blowfish.c -o ncbi_blowfish.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_usage_report.cpp -o ncbi_usage_report.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/connect_misc.cpp -o connect_misc.o
/bin/rm -f libxxconnect.a .libxxconnect.a.stamp
ar cr libxxconnect.a ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o ncbi_http_session.o ncbi_monkey.o ncbi_service_cxx.o ncbi_localip_cxx.o ncbi_blowfish.o ncbi_usage_report.o connect_misc.o ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o mbedtls/aes.o mbedtls/aesni.o mbedtls/arc4.o mbedtls/aria.o mbedtls/asn1parse.o mbedtls/asn1write.o mbedtls/base64.o mbedtls/bignum.o mbedtls/blowfish.o mbedtls/camellia.o mbedtls/ccm.o mbedtls/chacha20.o mbedtls/chachapoly.o mbedtls/cipher.o mbedtls/cipher_wrap.o mbedtls/cmac.o mbedtls/constant_time.o mbedtls/ctr_drbg.o mbedtls/des.o mbedtls/dhm.o mbedtls/ecdh.o mbedtls/ecdsa.o mbedtls/ecjpake.o mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hkdf.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/memory_buffer_alloc.o mbedtls/mps_reader.o mbedtls/mps_trace.o mbedtls/nist_kw.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/platform_util.o mbedtls/poly1305.o mbedtls/psa_crypto.o mbedtls/psa_crypto_aead.o mbedtls/psa_crypto_cipher.o mbedtls/psa_crypto_client.o mbedtls/psa_crypto_driver_wrappers.o mbedtls/psa_crypto_ecp.o mbedtls/psa_crypto_hash.o mbedtls/psa_crypto_mac.o mbedtls/psa_crypto_rsa.o mbedtls/psa_crypto_se.o mbedtls/psa_crypto_slot_management.o mbedtls/psa_crypto_storage.o mbedtls/psa_its_file.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/rsa_internal.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_msg.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o mbedtls/ssl_tls13_keys.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxxconnect.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxxconnect.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxxconnect.a
/bin/ln -f .xxconnect.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xxconnect.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xconnect -j3 --jobserver-auth=fifo:/tmp//GMfifo16883 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
/bin/rm -f libxconnect.a .libxconnect.a.stamp
ar cr libxconnect.a ncbi_lbsm.o ncbi_lbsm_ipc.o ncbi_ansi_ext.o ncbi_types.o ncbi_core.o ncbi_priv.o ncbi_util.o ncbi_buffer.o ncbi_socket.o ncbi_connector.o ncbi_connection.o ncbi_connutil.o ncbi_ipv6.o ncbi_server_info.o ncbi_host_info.o ncbi_service.o ncbi_sendmail.o ncbi_base64.o ncbi_heapmgr.o ncbi_lb.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_service_connector.o ncbi_ftp_connector.o ncbi_version.o ncbi_iprange.o ncbi_local.o ncbi_lbsmd.o ncbi_dispd.o ncbi_linkerd.o ncbi_namerd.o parson.o ncbi_localip.o ncbi_lbdns.o ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o ncbi_http_session.o ncbi_monkey.o ncbi_service_cxx.o ncbi_localip_cxx.o ncbi_blowfish.o ncbi_usage_report.o connect_misc.o ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o mbedtls/aes.o mbedtls/aesni.o mbedtls/arc4.o mbedtls/aria.o mbedtls/asn1parse.o mbedtls/asn1write.o mbedtls/base64.o mbedtls/bignum.o mbedtls/blowfish.o mbedtls/camellia.o mbedtls/ccm.o mbedtls/chacha20.o mbedtls/chachapoly.o mbedtls/cipher.o mbedtls/cipher_wrap.o mbedtls/cmac.o mbedtls/constant_time.o mbedtls/ctr_drbg.o mbedtls/des.o mbedtls/dhm.o mbedtls/ecdh.o mbedtls/ecdsa.o mbedtls/ecjpake.o mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hkdf.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/memory_buffer_alloc.o mbedtls/mps_reader.o mbedtls/mps_trace.o mbedtls/nist_kw.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/platform_util.o mbedtls/poly1305.o mbedtls/psa_crypto.o mbedtls/psa_crypto_aead.o mbedtls/psa_crypto_cipher.o mbedtls/psa_crypto_client.o mbedtls/psa_crypto_driver_wrappers.o mbedtls/psa_crypto_ecp.o mbedtls/psa_crypto_hash.o mbedtls/psa_crypto_mac.o mbedtls/psa_crypto_rsa.o mbedtls/psa_crypto_se.o mbedtls/psa_crypto_slot_management.o mbedtls/psa_crypto_storage.o mbedtls/psa_its_file.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/rsa_internal.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_msg.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o mbedtls/ssl_tls13_keys.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnect.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxconnect.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxconnect.a
/bin/ln -f .xconnect.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xconnect.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: *** No rule to make target '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/LIBUV.enabled', needed by 'requirements'. Stop.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
NOTE: skipping project "xxconnect2" due to unmet requirements
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xthrserv -j3 --jobserver-auth=fifo:/tmp//GMfifo16883 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/threaded_server.cpp:47:54: warning: 'CThreadedServer' is deprecated [-Wdeprecated-declarations]
47 | CSocketRequest(CThreadedServer& server, SOCK sock) // NCBI_FAKE_WARNING
| ^
In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/threaded_server.cpp:33:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/connect/threaded_server.hpp:77:44: note: declared here
77 | NCBI_DEPRECATED_CLASS NCBI_XCONNECT_EXPORT CThreadedServer
| ^~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/threaded_server.cpp:52:22: warning: 'CThreadedServer' is deprecated [-Wdeprecated-declarations]
52 | CThreadedServer& m_Server; // NCBI_FAKE_WARNING
| ^~~~~~~~
In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/threaded_server.cpp:33:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/connect/threaded_server.hpp:77:44: note: declared here
77 | NCBI_DEPRECATED_CLASS NCBI_XCONNECT_EXPORT CThreadedServer
| ^~~~~~~~~~~~~~~
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/threaded_server.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/server.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/server_monitor.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/connection_pool.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/threaded_server.cpp -o threaded_server.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/server.cpp -o server.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/server_monitor.cpp -o server_monitor.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/connection_pool.cpp -o connection_pool.o
/bin/rm -f libxthrserv.a .libxthrserv.a.stamp
ar cr libxthrserv.a threaded_server.o server.o server_monitor.o connection_pool.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxthrserv.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxthrserv.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxthrserv.a
/bin/ln -f .xthrserv.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xthrserv.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
/usr/pkg/bin/gmake -C services -j3 --jobserver-auth=fifo:/tmp//GMfifo13079 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/test/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/test/Makefile.in
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services/test/Makefile
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=xconnserv -j3 --jobserver-auth=fifo:/tmp//GMfifo9194 export-headers
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=ncbi_xcache_netcache -j3 --jobserver-auth=fifo:/tmp//GMfifo9194 export-headers
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=ncbi_xblobstorage_netcache -j3 --jobserver-auth=fifo:/tmp//GMfifo9194 export-headers
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=xconnserv -j3 --jobserver-auth=fifo:/tmp//GMfifo9194 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=ncbi_xcache_netcache -j3 --jobserver-auth=fifo:/tmp//GMfifo9194 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=ncbi_xblobstorage_netcache -j3 --jobserver-auth=fifo:/tmp//GMfifo9194 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=xconnserv -j3 --jobserver-auth=fifo:/tmp//GMfifo9194 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/ns_client_factory.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker_app.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_client.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_client_app.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_commit_thread.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_main_loop.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_cleanup.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_offline_mode.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_control_thread.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_globals.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_rw_impl.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/remote_app.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_params.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_submitter.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_executor.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_reader.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_admin.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_getjob.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_key.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_expt.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_key.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_rw.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_params.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api_admin.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_search.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_protocol_parser.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/util.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/clparser.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/json_over_uttp.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage_rpc.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorageobjectloc.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorageobjectinfo.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage_direct_nc.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/ns_output_parser.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/ns_job_serializer.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/compound_id.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/compound_id_v0.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_wn_info.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker.cpp -o grid_worker.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/ns_client_factory.cpp -o ns_client_factory.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker_app.cpp -o grid_worker_app.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_client.cpp -o grid_client.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_client_app.cpp -o grid_client_app.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_commit_thread.cpp -o wn_commit_thread.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_main_loop.cpp -o wn_main_loop.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_cleanup.cpp -o wn_cleanup.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_offline_mode.cpp -o wn_offline_mode.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_control_thread.cpp -o grid_control_thread.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_globals.cpp -o grid_globals.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_rw_impl.cpp -o grid_rw_impl.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/remote_app.cpp -o remote_app.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections.cpp -o srv_connections.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api.cpp -o netservice_api.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_params.cpp -o netservice_params.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api.cpp -o netschedule_api.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_submitter.cpp -o netschedule_api_submitter.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_executor.cpp -o netschedule_api_executor.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_reader.cpp -o netschedule_api_reader.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_admin.cpp -o netschedule_api_admin.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_getjob.cpp -o netschedule_api_getjob.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_key.cpp -o netschedule_key.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_expt.cpp -o netschedule_api_expt.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_key.cpp -o netcache_key.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_rw.cpp -o netcache_rw.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_params.cpp -o netcache_params.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api.cpp -o netcache_api.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api_admin.cpp -o netcache_api_admin.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_search.cpp -o netcache_search.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_protocol_parser.cpp -o netservice_protocol_parser.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/util.cpp -o util.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/clparser.cpp -o clparser.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/json_over_uttp.cpp -o json_over_uttp.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage.cpp -o netstorage.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage_rpc.cpp -o netstorage_rpc.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorageobjectloc.cpp -o netstorageobjectloc.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorageobjectinfo.cpp -o netstorageobjectinfo.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage_direct_nc.cpp -o netstorage_direct_nc.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/ns_output_parser.cpp -o ns_output_parser.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/ns_job_serializer.cpp -o ns_job_serializer.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/compound_id.cpp -o compound_id.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/compound_id_v0.cpp -o compound_id_v0.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_wn_info.cpp -o netschedule_api_wn_info.o
/bin/rm -f libxconnserv.a .libxconnserv.a.stamp
ar cr libxconnserv.a grid_worker.o ns_client_factory.o grid_worker_app.o grid_client.o grid_client_app.o wn_commit_thread.o wn_main_loop.o wn_cleanup.o wn_offline_mode.o grid_control_thread.o grid_globals.o grid_rw_impl.o remote_app.o srv_connections.o netservice_api.o netservice_params.o netschedule_api.o netschedule_api_submitter.o netschedule_api_executor.o netschedule_api_reader.o netschedule_api_admin.o netschedule_api_getjob.o netschedule_key.o netschedule_api_expt.o netcache_key.o netcache_rw.o netcache_params.o netcache_api.o netcache_api_admin.o netcache_search.o netservice_protocol_parser.o util.o clparser.o json_over_uttp.o netstorage.o netstorage_rpc.o netstorageobjectloc.o netstorageobjectinfo.o netstorage_direct_nc.o ns_output_parser.o ns_job_serializer.o compound_id.o compound_id_v0.o netschedule_api_wn_info.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnserv.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxconnserv.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxconnserv.a
/bin/ln -f .xconnserv.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xconnserv.dep
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=ncbi_xcache_netcache -j3 --jobserver-auth=fifo:/tmp//GMfifo9194 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/neticache_client.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/neticache_client.cpp -o neticache_client.o
/bin/rm -f libncbi_xcache_netcache.a .libncbi_xcache_netcache.a.stamp
/bin/rm -f libncbi_xcache_netcache-dll.so .libncbi_xcache_netcache-dll.so.stamp
ar cr libncbi_xcache_netcache.a neticache_client.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_netcache.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -shared -o libncbi_xcache_netcache-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 -fPIC neticache_client.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lxconnserv -lxconnect -lxutil -lm -lpthread
/bin/ln -f libncbi_xcache_netcache.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xcache_netcache.a
/bin/ln -f .ncbi_xcache_netcache.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xcache_netcache.dep
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_netcache-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libncbi_xcache_netcache-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xcache_netcache-dll.so
/bin/ln -f .ncbi_xcache_netcache-dll.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xcache_netcache-dll.dep
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=ncbi_xblobstorage_netcache -j3 --jobserver-auth=fifo:/tmp//GMfifo9194 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/blob_storage_netcache.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/services/blob_storage_netcache.cpp -o blob_storage_netcache.o
/bin/rm -f libncbi_xblobstorage_netcache.a .libncbi_xblobstorage_netcache.a.stamp
ar cr libncbi_xblobstorage_netcache.a blob_storage_netcache.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xblobstorage_netcache.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libncbi_xblobstorage_netcache.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xblobstorage_netcache.a
/bin/ln -f .ncbi_xblobstorage_netcache.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xblobstorage_netcache.dep
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services'
/usr/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/tmp//GMfifo24850 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services/test'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services/test'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services'
/usr/pkg/bin/gmake -C ext -j3 --jobserver-auth=fifo:/tmp//GMfifo13079 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ext/test/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ext/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ext/test/Makefile.in
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext/test/Makefile
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ext TMPL=connext -j3 --jobserver-auth=fifo:/tmp//GMfifo18375 export-headers
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ext TMPL=xconnext -j3 --jobserver-auth=fifo:/tmp//GMfifo18375 export-headers
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ext TMPL=connext -j3 --jobserver-auth=fifo:/tmp//GMfifo18375 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ext TMPL=xconnext -j3 --jobserver-auth=fifo:/tmp//GMfifo18375 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ext TMPL=connext -j3 --jobserver-auth=fifo:/tmp//GMfifo18375 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_ifconf.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_crypt.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_dblb.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_localnet.c.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_ifconf.c -o ncbi_ifconf.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_crypt.c -o ncbi_crypt.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_dblb.c -o ncbi_dblb.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_localnet.c -o ncbi_localnet.o
/bin/rm -f libconnext.a .libconnext.a.stamp
ar cr libconnext.a ncbi_ifconf.o ncbi_crypt.o ncbi_dblb.o ncbi_localnet.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnext.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libconnext.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libconnext.a
/bin/ln -f .connext.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.connext.dep
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ext TMPL=xconnext -j3 --jobserver-auth=fifo:/tmp//GMfifo18375 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_dblb_svcmapper.cpp: In member function 'virtual void ncbi::CDBLB_ServiceMapper::GetServerOptions(const string&, ncbi::IDBServiceMapper::TOptions*)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_dblb_svcmapper.cpp:336:33: warning: taking address of packed member of 'SLBSM_HostLoad' may result in an unaligned pointer value [-Waddress-of-packed-member]
336 | HINFO_Status(hinfo, &load.status);
| ^~~~~~~~~~~~
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_dblb_svcmapper.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_dblb_svcmapper.cpp -o ncbi_dblb_svcmapper.o
/bin/rm -f libxconnext.a .libxconnext.a.stamp
ar cr libxconnext.a ncbi_ifconf.o ncbi_crypt.o ncbi_dblb.o ncbi_localnet.o ncbi_dblb_svcmapper.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnext.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxconnext.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxconnext.a
/bin/ln -f .xconnext.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xconnext.dep
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext'
/usr/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/tmp//GMfifo15804 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext/test'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext/test'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext'
/usr/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/tmp//GMfifo13079 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/test'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/test'
gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect'
/usr/pkg/bin/gmake -C cgi -j3 --jobserver-auth=fifo:/tmp//GMfifo22236 all_r || exit 5
gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi'
gmake[2]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/cgi/test/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/cgi/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/cgi/test/Makefile.in
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi/test/Makefile
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/cgi TMPL=cgi -j3 --jobserver-auth=fifo:/tmp//GMfifo19788 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/cgi TMPL=fcgi -j3 --jobserver-auth=fifo:/tmp//GMfifo19788 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: *** No rule to make target '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/FASTCGIPP.enabled', needed by 'requirements'. Stop.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi'
NOTE: skipping project "fcgi_mt" due to unmet requirements
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/cgi TMPL=cgi -j3 --jobserver-auth=fifo:/tmp//GMfifo19788 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/cgi TMPL=fcgi -j3 --jobserver-auth=fifo:/tmp//GMfifo19788 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: *** No rule to make target '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/FASTCGIPP.enabled', needed by 'requirements'. Stop.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi'
NOTE: skipping project "fcgi_mt" due to unmet requirements
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/cgi TMPL=cgi -j3 --jobserver-auth=fifo:/tmp//GMfifo19788 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/cgi/ncbicgi.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/cgi/cgiapp.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/cgi/cgictx.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/cgi/ncbicgir.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/cgi/ncbires.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/cgi/ref_args.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_run.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_util.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_serial.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_session.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_exception.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/cgi/cgiapp_cached.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_entry_reader.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/cgi/user_agent.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/cgi/ncbicgi.cpp -o ncbicgi.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/cgi/cgiapp.cpp -o cgiapp.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/cgi/cgictx.cpp -o cgictx.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/cgi/ncbicgir.cpp -o ncbicgir.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/cgi/ncbires.cpp -o ncbires.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/cgi/ref_args.cpp -o ref_args.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_run.cpp -o cgi_run.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_util.cpp -o cgi_util.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_serial.cpp -o cgi_serial.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_session.cpp -o cgi_session.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_exception.cpp -o cgi_exception.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/cgi/cgiapp_cached.cpp -o cgiapp_cached.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_entry_reader.cpp -o cgi_entry_reader.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/cgi/user_agent.cpp -o user_agent.o
/bin/rm -f libxcgi.a .libxcgi.a.stamp
ar cr libxcgi.a ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_run.o cgi_util.o cgi_serial.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcgi.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxcgi.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxcgi.a
/bin/ln -f .xcgi.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xcgi.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/cgi TMPL=fcgi -j3 --jobserver-auth=fifo:/tmp//GMfifo19788 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/cgi/fcgi_run.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_XFCGI_EXPORTS -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/cgi/fcgi_run.cpp -o fcgi_run.o
/bin/rm -f libxfcgi.a .libxfcgi.a.stamp
ar cr libxfcgi.a ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_util.o cgi_serial.o fcgi_run.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxfcgi.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxfcgi.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxfcgi.a
/bin/ln -f .xfcgi.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xfcgi.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: *** No rule to make target '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/FASTCGIPP.enabled', needed by 'requirements'. Stop.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi'
NOTE: skipping project "fcgi_mt" due to unmet requirements
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi'
/usr/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/tmp//GMfifo2743 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi/test'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi/test'
gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi'
/usr/pkg/bin/gmake -C html -j3 --jobserver-auth=fifo:/tmp//GMfifo22236 all_r || exit 5
gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html'
gmake[2]: warning: -j3 forced in submake: resetting jobserver mode.
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/html/test/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/html/demo/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/html/demo/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/html/demo/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/html/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/html/test/Makefile.in
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT demo/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html/test/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html/demo/Makefile
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html'
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/html TMPL=html -j3 --jobserver-auth=fifo:/tmp//GMfifo22817 export-headers
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html'
gmake[3]: Nothing to be done for 'export-headers'.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html'
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html'
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/html TMPL=html -j3 --jobserver-auth=fifo:/tmp//GMfifo22817 flag-stamps
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html'
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html'
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/html TMPL=html -j3 --jobserver-auth=fifo:/tmp//GMfifo22817 all
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/html/node.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/html/html.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/html/htmlhelper.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/html/page.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/html/pager.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/html/selection.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/html/components.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/html/commentdiag.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/html/indentstream.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/html/html_exception.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/html/writer_htmlenc.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/html/node.cpp -o node.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/html/html.cpp -o html.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/html/htmlhelper.cpp -o htmlhelper.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/html/page.cpp -o page.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/html/pager.cpp -o pager.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/html/selection.cpp -o selection.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/html/components.cpp -o components.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/html/commentdiag.cpp -o commentdiag.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/html/indentstream.cpp -o indentstream.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/html/html_exception.cpp -o html_exception.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/html/writer_htmlenc.cpp -o writer_htmlenc.o
/bin/rm -f libxhtml.a .libxhtml.a.stamp
ar cr libxhtml.a node.o html.o htmlhelper.o page.o pager.o selection.o components.o commentdiag.o indentstream.o html_exception.o writer_htmlenc.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxhtml.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxhtml.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxhtml.a
/bin/ln -f .xhtml.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xhtml.dep
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html'
/usr/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/tmp//GMfifo22817 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html/test'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html/test'
/usr/pkg/bin/gmake -C demo -j3 --jobserver-auth=fifo:/tmp//GMfifo22817 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html/demo'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html/demo'
gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html'
/usr/pkg/bin/gmake -C build-system -j3 --jobserver-auth=fifo:/tmp//GMfifo22236 all_r || exit 5
gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system'
gmake[2]: warning: -j3 forced in submake: resetting jobserver mode.
/usr/pkg/bin/gmake -C helpers -j3 --jobserver-auth=fifo:/tmp//GMfifo4731 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/helpers'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/helpers'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/helpers'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/helpers'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/helpers'
/usr/pkg/bin/gmake[3] (Makefile.run_with_lock.app): Nothing to be done for `flag-stamps'.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/helpers'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/helpers'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/helpers'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/helpers'
/usr/pkg/bin/gmake[3] (Makefile.run_with_lock.app): Nothing to be done for `all'.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/helpers'
/usr/pkg/bin/gmake -C project_tree_builder -j3 --jobserver-auth=fifo:/tmp//GMfifo4731 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder TMPL=project_tree_builder -j3 --jobserver-auth=fifo:/tmp//GMfifo20913 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder TMPL=project_tree_builder -j3 --jobserver-auth=fifo:/tmp//GMfifo20913 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/file_contents.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_configure.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_makefile.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_masterproject_generator.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_generator.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_project_context.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_site.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_sln_generator.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_builder_app.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_item.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_tree.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_tree_builder.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_src_resolver.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_utils.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/resolver.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_configure_prj_generator.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_projects.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_dlls_info.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/configurable_file.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/ptb_gui.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/ptb_registry.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/prj_file_collector.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/file_contents.cpp -o file_contents.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_configure.cpp -o msvc_configure.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_makefile.cpp -o msvc_makefile.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_masterproject_generator.cpp -o msvc_masterproject_generator.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_generator.cpp -o msvc_prj_generator.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.cpp -o msvc_prj_utils.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_project_context.cpp -o msvc_project_context.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_site.cpp -o msvc_site.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_sln_generator.cpp -o msvc_sln_generator.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_builder_app.cpp -o proj_builder_app.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp -o proj_datatool_generated_src.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_item.cpp -o proj_item.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_tree.cpp -o proj_tree.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_tree_builder.cpp -o proj_tree_builder.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_src_resolver.cpp -o proj_src_resolver.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_utils.cpp -o proj_utils.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/resolver.cpp -o resolver.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_configure_prj_generator.cpp -o msvc_configure_prj_generator.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_projects.cpp -o proj_projects.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_dlls_info.cpp -o msvc_dlls_info.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.cpp -o msvc_prj_files_collector.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/configurable_file.cpp -o configurable_file.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/ptb_gui.cpp -o ptb_gui.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/ptb_registry.cpp -o ptb_registry.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp -o mac_prj_generator.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/prj_file_collector.cpp -o prj_file_collector.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 file_contents.o msvc_configure.o msvc_makefile.o msvc_masterproject_generator.o msvc_prj_generator.o msvc_prj_utils.o msvc_project_context.o msvc_site.o msvc_sln_generator.o proj_builder_app.o proj_datatool_generated_src.o proj_item.o proj_tree.o proj_tree_builder.o proj_src_resolver.o proj_utils.o resolver.o msvc_configure_prj_generator.o proj_projects.o msvc_dlls_info.o msvc_prj_files_collector.o configurable_file.o ptb_gui.o ptb_registry.o mac_prj_generator.o prj_file_collector.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lxutil -lxncbi -lxregexp -L/usr/pkg/lib -lpcre -lm -lpthread -o project_tree_builder
strip project_tree_builder
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f project_tree_builder /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin
/bin/ln -f project_tree_builder /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/project_tree_builder
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder'
/usr/pkg/bin/gmake -C msbuild -j3 --jobserver-auth=fifo:/tmp//GMfifo20913 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
NOTE: Skipping project msbuild due to unmet requirements:
MSWin
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msbuild TMPL=msbuild_dataobj -j3 --jobserver-auth=fifo:/tmp//GMfifo2044 mark-as-disabled
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild'
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder'
gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system'
/usr/pkg/bin/gmake -C serial -j3 --jobserver-auth=fifo:/tmp//GMfifo22236 all_r || exit 5
gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial'
gmake[2]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/test/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/soap/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/test/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/soap/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/soap/Makefile.in
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT soap/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/test/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/soap/Makefile
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial TMPL=serial -j3 --jobserver-auth=fifo:/tmp//GMfifo15670 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial TMPL=cserial -j3 --jobserver-auth=fifo:/tmp//GMfifo15670 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial TMPL=serial -j3 --jobserver-auth=fifo:/tmp//GMfifo15670 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial TMPL=cserial -j3 --jobserver-auth=fifo:/tmp//GMfifo15670 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial TMPL=serial -j3 --jobserver-auth=fifo:/tmp//GMfifo15670 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/hookdata.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/hookdatakey.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/typeinfo.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/objectinfo.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/objectiter.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/objectio.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/typeref.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/typemap.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/enumerated.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/ptrinfo.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/autoptrinfo.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/continfo.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/stltypes.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/memberid.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/memberlist.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/item.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/classinfob.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/member.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/classinfo.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/variant.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/choice.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/choiceptr.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/aliasinfo.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/objistr.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/objostr.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/objcopy.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/iterator.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/serial.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/delaybuf.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/pack_string.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/exception.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/objhook.cpp.
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/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/rpcbase.cpp -o rpcbase.o
/bin/rm -f libxser.a .libxser.a.stamp
ar cr libxser.a hookdata.o hookdatakey.o typeinfo.o objectinfo.o objectiter.o objectio.o typeref.o typemap.o stdtypes.o enumerated.o ptrinfo.o autoptrinfo.o continfo.o stltypes.o memberid.o memberlist.o item.o classinfob.o member.o classinfo.o variant.o choice.o choiceptr.o aliasinfo.o objistr.o objostr.o objcopy.o iterator.o serial.o delaybuf.o pack_string.o exception.o objhook.o objlist.o objstack.o objostrasn.o objistrasn.o objostrasnb.o objistrasnb.o objostrxml.o objistrxml.o objostrjson.o objistrjson.o serializable.o serialobject.o pathhook.o rpcbase.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxser.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxser.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxser.a
/bin/ln -f .xser.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xser.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial TMPL=cserial -j3 --jobserver-auth=fifo:/tmp//GMfifo15670 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/asntypes.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/serialasn.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/asntypes.cpp -o asntypes.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/serialasn.cpp -o serialasn.o
/bin/rm -f libxcser.a .libxcser.a.stamp
ar cr libxcser.a asntypes.o serialasn.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcser.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxcser.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxcser.a
/bin/ln -f .xcser.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xcser.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial'
/usr/pkg/bin/gmake -C datatool -j3 --jobserver-auth=fifo:/tmp//GMfifo16548 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/datatool TMPL=datatool -j3 --jobserver-auth=fifo:/tmp//GMfifo1328 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/datatool TMPL=datatool -j3 --jobserver-auth=fifo:/tmp//GMfifo1328 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/datatool.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/type.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/namespace.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/statictype.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/enumtype.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/reftype.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/unitype.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/blocktype.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/choicetype.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/typestr.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/ptrstr.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/stdstr.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/classstr.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/enumstr.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/stlstr.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/choicestr.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/choiceptrstr.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/value.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/mcontainer.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/module.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/moduleset.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/generate.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/filecode.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/code.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/fileutil.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/alexer.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/aparser.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/parser.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/lexer.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/exceptions.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/comments.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/srcutil.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/dtdaux.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/dtdlexer.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/dtdparser.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/rpcgen.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/aliasstr.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/xsdlexer.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/xsdparser.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/wsdllexer.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/wsdlparser.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/wsdlstr.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/jsdlexer.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/jsdparser.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_pattern_match_callback.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_code_generator.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_merger.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_node.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_spec_file_parser.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/datatool.cpp -o datatool.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/type.cpp -o type.o
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/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_merger.cpp -o traversal_merger.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_node.cpp -o traversal_node.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_spec_file_parser.cpp -o traversal_spec_file_parser.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 datatool.o type.o namespace.o statictype.o enumtype.o reftype.o unitype.o blocktype.o choicetype.o typestr.o ptrstr.o stdstr.o classstr.o enumstr.o stlstr.o choicestr.o choiceptrstr.o value.o mcontainer.o module.o moduleset.o generate.o filecode.o code.o fileutil.o alexer.o aparser.o parser.o lexer.o exceptions.o comments.o srcutil.o dtdaux.o dtdlexer.o dtdparser.o rpcgen.o aliasstr.o xsdlexer.o xsdparser.o wsdllexer.o wsdlparser.o wsdlstr.o jsdlexer.o jsdparser.o traversal_pattern_match_callback.o traversal_code_generator.o traversal_merger.o traversal_node.o traversal_spec_file_parser.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lxser -lxutil -lxncbi -lm -lpthread -o datatool
strip datatool
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f datatool /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin
/bin/ln -f datatool /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool'
/usr/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/tmp//GMfifo16548 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/test'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/test'
/usr/pkg/bin/gmake -C soap -j3 --jobserver-auth=fifo:/tmp//GMfifo16548 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/soap'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/soap'
/usr/pkg/bin/gmake -C grpc_integration -j3 --jobserver-auth=fifo:/tmp//GMfifo16548 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/grpc_integration TMPL=grpc_integration -j3 --jobserver-auth=fifo:/tmp//GMfifo6955 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/grpc_integration TMPL=grpc_integration -j3 --jobserver-auth=fifo:/tmp//GMfifo6955 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/grpc_integration TMPL=grpc_integration -j3 --jobserver-auth=fifo:/tmp//GMfifo6955 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/grpc_integration/grpc_integration.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/serial/grpc_integration/grpc_integration.cpp -o grpc_integration.o
/bin/rm -f libgrpc_integration.a .libgrpc_integration.a.stamp
ar cr libgrpc_integration.a grpc_integration.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgrpc_integration.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libgrpc_integration.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgrpc_integration.a
/bin/ln -f .grpc_integration.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.grpc_integration.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration'
gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial'
/usr/pkg/bin/gmake -C db -j3 --jobserver-auth=fifo:/tmp//GMfifo22236 all_r || exit 5
gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db'
gmake[2]: warning: -j3 forced in submake: resetting jobserver mode.
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/db/bdb/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/db/bdb/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/db/bdb/Makefile.in
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT bdb/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/bdb/Makefile
/usr/pkg/bin/gmake -C sqlite -j3 --jobserver-auth=fifo:/tmp//GMfifo19546 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/db/sqlite TMPL=sqlitewrapp -j3 --jobserver-auth=fifo:/tmp//GMfifo23916 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/db/sqlite TMPL=sqlitewrapp -j3 --jobserver-auth=fifo:/tmp//GMfifo23916 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/db/sqlite TMPL=sqlitewrapp -j3 --jobserver-auth=fifo:/tmp//GMfifo23916 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/db/sqlite/sqlitewrapp.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/db/sqlite/sqlitewrapp.cpp -o sqlitewrapp.o
/bin/rm -f libsqlitewrapp.a .libsqlitewrapp.a.stamp
ar cr libsqlitewrapp.a sqlitewrapp.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsqlitewrapp.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libsqlitewrapp.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libsqlitewrapp.a
/bin/ln -f .sqlitewrapp.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.sqlitewrapp.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite'
/usr/pkg/bin/gmake -C bdb -j3 --jobserver-auth=fifo:/tmp//GMfifo19546 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/bdb'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/bdb'
gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db'
/usr/pkg/bin/gmake -C dbapi -j3 --jobserver-auth=fifo:/tmp//GMfifo22236 all_r || exit 5
gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi'
gmake[2]: warning: -j3 forced in submake: resetting jobserver mode.
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/simple/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/lang_bind/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/test/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/test/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/lang_bind/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/lang_bind/Makefile.in
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT lang_bind/Makefile
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/simple/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/simple/Makefile.in
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT simple/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/simple/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/lang_bind/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/test/Makefile
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi'
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi TMPL=dbapi -j3 --jobserver-auth=fifo:/tmp//GMfifo12268 export-headers
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi'
gmake[3]: Nothing to be done for 'export-headers'.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi'
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi'
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi TMPL=dbapi -j3 --jobserver-auth=fifo:/tmp//GMfifo12268 flag-stamps
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi'
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi'
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi TMPL=dbapi -j3 --jobserver-auth=fifo:/tmp//GMfifo12268 all
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/dbapi.cpp: In member function 'virtual ncbi::CNcbiOstream& ncbi::IResultSet::GetBlobOStream(size_t, ncbi::EAllowLog, size_t)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/dbapi.cpp:119:35: warning: 'virtual ncbi::CNcbiOstream& ncbi::IResultSet::GetBlobOStream(size_t, ncbi::TBlobOStreamFlags, size_t)' is deprecated [-Wdeprecated-declarations]
119 | buf_size);
| ^
In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/dbapi.cpp:35:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/dbapi/dbapi.hpp:269:27: note: declared here
269 | virtual CNcbiOstream& GetBlobOStream(size_t blob_size,
| ^~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/dbapi.cpp: In member function 'virtual ncbi::CNcbiOstream& ncbi::IResultSet::GetBlobOStream(ncbi::IConnection*, size_t, ncbi::EAllowLog, size_t)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/dbapi.cpp:127:35: warning: 'virtual ncbi::CNcbiOstream& ncbi::IResultSet::GetBlobOStream(ncbi::IConnection*, size_t, ncbi::TBlobOStreamFlags, size_t)' is deprecated [-Wdeprecated-declarations]
127 | buf_size);
| ^
In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/dbapi.cpp:35:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/dbapi/dbapi.hpp:294:27: note: declared here
294 | virtual CNcbiOstream& GetBlobOStream(IConnection *conn,
| ^~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/dbapi.cpp: In member function 'virtual ncbi::CNcbiOstream& ncbi::ICursor::GetBlobOStream(unsigned int, size_t, ncbi::EAllowLog, size_t)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/dbapi.cpp:157:35: warning: 'virtual ncbi::CNcbiOstream& ncbi::ICursor::GetBlobOStream(unsigned int, size_t, ncbi::TBlobOStreamFlags, size_t)' is deprecated [-Wdeprecated-declarations]
157 | buf_size);
| ^
In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/dbapi.cpp:35:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/dbapi/dbapi.hpp:596:27: note: declared here
596 | virtual CNcbiOstream& GetBlobOStream(unsigned int col,
| ^~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/dbapi.cpp: In member function 'virtual ncbi::IWriter* ncbi::ICursor::GetBlobWriter(unsigned int, size_t, ncbi::EAllowLog)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/dbapi.cpp:164:72: warning: 'virtual ncbi::IWriter* ncbi::ICursor::GetBlobWriter(unsigned int, size_t, ncbi::TBlobOStreamFlags)' is deprecated [-Wdeprecated-declarations]
164 | (log_it == eDisableLog) ? fBOS_SkipLogging : 0);
| ^
In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/dbapi.cpp:35:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/dbapi/dbapi.hpp:621:22: note: declared here
621 | virtual IWriter* GetBlobWriter(unsigned int col,
| ^~~~~~~~~~~~~
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/variant.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/active_obj.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/dbapi.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver_mgr.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/err_handler.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/ds_impl.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/conn_impl.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/stmt_impl.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/rsmeta_impl.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/cstmt_impl.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/bytestreambuf.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/blobstream.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/bulkinsert.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/rw_impl.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/variant.cpp -o variant.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/active_obj.cpp -o active_obj.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/dbapi.cpp -o dbapi.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver_mgr.cpp -o driver_mgr.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/err_handler.cpp -o err_handler.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/ds_impl.cpp -o ds_impl.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/conn_impl.cpp -o conn_impl.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/stmt_impl.cpp -o stmt_impl.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp: In member function 'void ncbi::CResultSet::x_CacheItems(int)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp:261:59: warning: 'virtual ncbi::I_BlobDescriptor* ncbi::CDB_Result::GetBlobDescriptor()' is deprecated [-Wdeprecated-declarations]
261 | var.SetBlobDescriptor(m_rs->GetBlobDescriptor());
| ^
In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver/driver_mgr.hpp:36,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver_mgr.hpp:38,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/dbapi/dbapi.hpp:40,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/stmt_impl.hpp:38,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp:37:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver/public.hpp:542:31: note: declared here
542 | virtual I_BlobDescriptor* GetBlobDescriptor();
| ^~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp: In member function 'virtual ncbi::CNcbiOstream& ncbi::CResultSet::GetBlobOStream(size_t, ncbi::EAllowLog, size_t)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp:329:66: warning: 'virtual ncbi::CNcbiOstream& ncbi::IResultSet::GetBlobOStream(size_t, ncbi::EAllowLog, size_t)' is deprecated [-Wdeprecated-declarations]
329 | return IResultSet::GetBlobOStream(blob_size, log_it, buf_size);
| ^
In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/stmt_impl.hpp:38,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp:37:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/dbapi/dbapi.hpp:274:27: note: declared here
274 | virtual CNcbiOstream& GetBlobOStream(size_t blob_size,
| ^~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp: At global scope:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp:330:1: warning: 'virtual ncbi::CNcbiOstream& ncbi::CResultSet::GetBlobOStream(size_t, ncbi::EAllowLog, size_t)' is deprecated [-Wdeprecated-declarations]
330 | }
| ^
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp:325:15: note: declared here
325 | CNcbiOstream& CResultSet::GetBlobOStream(size_t blob_size,
| ^~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp: In member function 'virtual ncbi::CNcbiOstream& ncbi::CResultSet::GetBlobOStream(ncbi::IConnection*, size_t, ncbi::EAllowLog, size_t)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp:337:72: warning: 'virtual ncbi::CNcbiOstream& ncbi::IResultSet::GetBlobOStream(ncbi::IConnection*, size_t, ncbi::EAllowLog, size_t)' is deprecated [-Wdeprecated-declarations]
337 | return IResultSet::GetBlobOStream(conn, blob_size, log_it, buf_size);
| ^
In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/stmt_impl.hpp:38,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp:37:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/dbapi/dbapi.hpp:300:27: note: declared here
300 | virtual CNcbiOstream& GetBlobOStream(IConnection *conn,
| ^~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp: At global scope:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp:338:1: warning: 'virtual ncbi::CNcbiOstream& ncbi::CResultSet::GetBlobOStream(ncbi::IConnection*, size_t, ncbi::EAllowLog, size_t)' is deprecated [-Wdeprecated-declarations]
338 | }
| ^
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp:332:15: note: declared here
332 | CNcbiOstream& CResultSet::GetBlobOStream(IConnection *conn,
| ^~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp:355:1: warning: 'virtual ncbi::CNcbiOstream& ncbi::CResultSet::GetBlobOStream(size_t, ncbi::TBlobOStreamFlags, size_t)' is deprecated [-Wdeprecated-declarations]
355 | }
| ^
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp:348:15: note: declared here
348 | CNcbiOstream& CResultSet::GetBlobOStream(size_t blob_size,
| ^~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp:365:1: warning: 'virtual ncbi::CNcbiOstream& ncbi::CResultSet::GetBlobOStream(ncbi::IConnection*, size_t, ncbi::TBlobOStreamFlags, size_t)' is deprecated [-Wdeprecated-declarations]
365 | }
| ^
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp:357:15: note: declared here
357 | CNcbiOstream& CResultSet::GetBlobOStream(IConnection *conn,
| ^~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp: In member function 'ncbi::CNcbiOstream& ncbi::CResultSet::xGetBlobOStream(ncbi::CDB_Connection*, size_t, ncbi::TBlobOStreamFlags, size_t, bool)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp:384:63: warning: 'virtual ncbi::I_BlobDescriptor* ncbi::CDB_Result::GetBlobDescriptor()' is deprecated [-Wdeprecated-declarations]
384 | unique_ptr<I_BlobDescriptor> desc(m_rs->GetBlobDescriptor());
| ^
In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver/driver_mgr.hpp:36,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver_mgr.hpp:38,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/dbapi/dbapi.hpp:40,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/stmt_impl.hpp:38,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp:37:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver/public.hpp:542:31: note: declared here
542 | virtual I_BlobDescriptor* GetBlobDescriptor();
| ^~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp:122:1: warning: 'virtual ncbi::CNcbiOstream& ncbi::CCursor::GetBlobOStream(unsigned int, size_t, ncbi::TBlobOStreamFlags, size_t)' is deprecated [-Wdeprecated-declarations]
122 | }
| ^
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp:106:15: note: declared here
106 | CNcbiOstream& CCursor::GetBlobOStream(unsigned int col,
| ^~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp: In member function 'virtual ncbi::CNcbiOstream& ncbi::CCursor::GetBlobOStream(unsigned int, size_t, ncbi::EAllowLog, size_t)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp:129:68: warning: 'virtual ncbi::CNcbiOstream& ncbi::ICursor::GetBlobOStream(unsigned int, size_t, ncbi::EAllowLog, size_t)' is deprecated [-Wdeprecated-declarations]
129 | return ICursor::GetBlobOStream(col, blob_size, log_it, buf_size);
| ^
In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/conn_impl.hpp:38,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp:35:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/dbapi/dbapi.hpp:602:27: note: declared here
602 | virtual CNcbiOstream& GetBlobOStream(unsigned int col,
| ^~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp: At global scope:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp:130:1: warning: 'virtual ncbi::CNcbiOstream& ncbi::CCursor::GetBlobOStream(unsigned int, size_t, ncbi::EAllowLog, size_t)' is deprecated [-Wdeprecated-declarations]
130 | }
| ^
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp:124:15: note: declared here
124 | CNcbiOstream& CCursor::GetBlobOStream(unsigned int col,
| ^~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp:145:1: warning: 'virtual ncbi::IWriter* ncbi::CCursor::GetBlobWriter(unsigned int, size_t, ncbi::TBlobOStreamFlags)' is deprecated [-Wdeprecated-declarations]
145 | }
| ^
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp:132:10: note: declared here
132 | IWriter* CCursor::GetBlobWriter(unsigned int col,
| ^~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp: In member function 'virtual ncbi::IWriter* ncbi::CCursor::GetBlobWriter(unsigned int, size_t, ncbi::EAllowLog)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp:151:57: warning: 'virtual ncbi::IWriter* ncbi::ICursor::GetBlobWriter(unsigned int, size_t, ncbi::EAllowLog)' is deprecated [-Wdeprecated-declarations]
151 | return ICursor::GetBlobWriter(col, blob_size, log_it);
| ^
In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/conn_impl.hpp:38,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp:35:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/dbapi/dbapi.hpp:626:22: note: declared here
626 | virtual IWriter* GetBlobWriter(unsigned int col,
| ^~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp: At global scope:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp:152:1: warning: 'virtual ncbi::IWriter* ncbi::CCursor::GetBlobWriter(unsigned int, size_t, ncbi::EAllowLog)' is deprecated [-Wdeprecated-declarations]
152 | }
| ^
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp:147:10: note: declared here
147 | IWriter* CCursor::GetBlobWriter(unsigned int col,
| ^~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/blobstream.cpp: In constructor 'ncbi::CBlobOStream::CBlobOStream(ncbi::CDB_CursorCmd*, unsigned int, size_t, std::streamsize, ncbi::TBlobOStreamFlags, ncbi::CDB_Connection*)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/blobstream.cpp:86:69: warning: 'virtual ncbi::CDB_SendDataCmd* ncbi::CDB_CursorCmd::SendDataCmd(unsigned int, size_t, bool, bool)' is deprecated [-Wdeprecated-declarations]
86 | (flags & fBOS_SkipLogging) == 0));
| ^
In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver/driver_mgr.hpp:36,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver_mgr.hpp:38,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/dbapi/dbapi.hpp:40,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/bytestreambuf.hpp:36,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/blobstream.hpp:36,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/blobstream.cpp:34:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver/public.hpp:891:30: note: declared here
891 | virtual CDB_SendDataCmd* SendDataCmd(unsigned int item_num, size_t size,
| ^~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/rw_impl.cpp: In constructor 'ncbi::CxBlobWriter::CxBlobWriter(ncbi::CDB_CursorCmd*, unsigned int, size_t, ncbi::TBlobOStreamFlags)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/rw_impl.cpp:89:68: warning: 'virtual ncbi::CDB_SendDataCmd* ncbi::CDB_CursorCmd::SendDataCmd(unsigned int, size_t, bool, bool)' is deprecated [-Wdeprecated-declarations]
89 | (flags & fBOS_SkipLogging) == 0);
| ^
In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver/driver_mgr.hpp:36,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver_mgr.hpp:38,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/dbapi/dbapi.hpp:40,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/rw_impl.hpp:38,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/rw_impl.cpp:35:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver/public.hpp:891:30: note: declared here
891 | virtual CDB_SendDataCmd* SendDataCmd(unsigned int item_num, size_t size,
| ^~~~~~~~~~~
I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp -o rs_impl.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/rsmeta_impl.cpp -o rsmeta_impl.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/cstmt_impl.cpp -o cstmt_impl.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/bytestreambuf.cpp -o bytestreambuf.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/blobstream.cpp -o blobstream.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp -o cursor_impl.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/bulkinsert.cpp -o bulkinsert.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/rw_impl.cpp -o rw_impl.o
/bin/rm -f libdbapi.a .libdbapi.a.stamp
ar cr libdbapi.a variant.o active_obj.o dbapi.o driver_mgr.o err_handler.o ds_impl.o conn_impl.o stmt_impl.o rs_impl.o rsmeta_impl.o cstmt_impl.o bytestreambuf.o blobstream.o cursor_impl.o bulkinsert.o rw_impl.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libdbapi.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi.a
/bin/ln -f .dbapi.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.dbapi.dep
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi'
/usr/pkg/bin/gmake -C driver -j3 --jobserver-auth=fifo:/tmp//GMfifo12268 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/util/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ctlib/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ftds100/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ctlib/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ctlib/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ftds100/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ftds100/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/util/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/util/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ftds-default/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/mysql/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/samples/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/mysql/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/mysql/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ftds-default/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ftds-default/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/samples/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/samples/Makefile.in
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT util/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT ctlib/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT ftds100/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/ctlib/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/util/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds100/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT ftds-default/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT mysql/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT samples/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds-default/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/mysql/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/samples/Makefile
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver TMPL=dbapi_driver -j3 --jobserver-auth=fifo:/tmp//GMfifo22163 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver TMPL=dbapi_driver -j3 --jobserver-auth=fifo:/tmp//GMfifo22163 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver'
/usr/bin/awk: can't open file make_dbapi_driver.log.new
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver'
source line number 4
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver TMPL=dbapi_driver -j3 --jobserver-auth=fifo:/tmp//GMfifo22163 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/interfaces.cpp: In member function 'bool ncbi::I_CursorCmd::UpdateTextImage(unsigned int, ncbi::CDB_Stream&, bool)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/interfaces.cpp:248:45: warning: 'virtual bool ncbi::I_CursorCmd::UpdateBlob(unsigned int, ncbi::CDB_Stream&, bool)' is deprecated [-Wdeprecated-declarations]
248 | return UpdateBlob(item_num, data, log_it);
| ^
In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver/dbapi_driver_conn_mgr.hpp:38,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver/dbapi_driver_conn_params.hpp:36,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/interfaces.cpp:34:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver/interfaces.hpp:561:18: note: declared here
561 | virtual bool UpdateBlob(unsigned int item_num, CDB_Stream& data,
| ^~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/interfaces.cpp: In member function 'ncbi::I_BlobDescriptor* ncbi::I_Result::GetImageOrTextDescriptor()':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/interfaces.cpp:276:30: warning: 'virtual ncbi::I_BlobDescriptor* ncbi::I_Result::GetBlobDescriptor()' is deprecated [-Wdeprecated-declarations]
276 | return GetBlobDescriptor();
| ^
In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver/dbapi_driver_conn_mgr.hpp:38,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver/dbapi_driver_conn_params.hpp:36,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/interfaces.cpp:34:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver/interfaces.hpp:769:31: note: declared here
769 | virtual I_BlobDescriptor* GetBlobDescriptor(void) = 0;
| ^~~~~~~~~~~~~~~~~
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/handle_stack.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/numeric_convert.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/parameters.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/exception.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/interfaces.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/public.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/types.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/memory_store.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/pointer_pot.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/driver_mgr.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_driver_conn_mgr.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_conn_factory.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_svc_mapper.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_driver_utils.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_impl_cmd.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_impl_connection.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_impl_context.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_impl_result.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_driver_conn_params.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_driver_exception_storage.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_object_convert.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_pool_balancer.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/handle_stack.cpp -o handle_stack.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/numeric_convert.cpp -o numeric_convert.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/parameters.cpp -o parameters.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/exception.cpp -o exception.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/interfaces.cpp -o interfaces.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/public.cpp -o public.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/types.cpp -o types.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/memory_store.cpp -o memory_store.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/pointer_pot.cpp -o pointer_pot.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/driver_mgr.cpp -o driver_mgr.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_driver_conn_mgr.cpp -o dbapi_driver_conn_mgr.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_conn_factory.cpp -o dbapi_conn_factory.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_svc_mapper.cpp -o dbapi_svc_mapper.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_driver_utils.cpp -o dbapi_driver_utils.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_impl_cmd.cpp -o dbapi_impl_cmd.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_impl_connection.cpp -o dbapi_impl_connection.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_impl_context.cpp -o dbapi_impl_context.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_impl_result.cpp -o dbapi_impl_result.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_driver_conn_params.cpp -o dbapi_driver_conn_params.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_driver_exception_storage.cpp -o dbapi_driver_exception_storage.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_object_convert.cpp -o dbapi_object_convert.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp -o dbapi_driver_convert.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_pool_balancer.cpp -o dbapi_pool_balancer.o
/bin/rm -f libdbapi_driver.a .libdbapi_driver.a.stamp
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ar cr libdbapi_driver.a handle_stack.o numeric_convert.o parameters.o exception.o interfaces.o public.o types.o memory_store.o pointer_pot.o driver_mgr.o dbapi_driver_conn_mgr.o dbapi_conn_factory.o dbapi_svc_mapper.o dbapi_driver_utils.o dbapi_impl_cmd.o dbapi_impl_connection.o dbapi_impl_context.o dbapi_impl_result.o dbapi_driver_conn_params.o dbapi_driver_exception_storage.o dbapi_object_convert.o dbapi_driver_convert.o dbapi_pool_balancer.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -shared -o libdbapi_driver-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 -fPIC handle_stack.o numeric_convert.o parameters.o exception.o interfaces.o public.o types.o memory_store.o pointer_pot.o driver_mgr.o dbapi_driver_conn_mgr.o dbapi_conn_factory.o dbapi_svc_mapper.o dbapi_driver_utils.o dbapi_impl_cmd.o dbapi_impl_connection.o dbapi_impl_context.o dbapi_impl_result.o dbapi_driver_conn_params.o dbapi_driver_exception_storage.o dbapi_object_convert.o dbapi_driver_convert.o dbapi_pool_balancer.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lm -lpthread
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi_driver.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libdbapi_driver.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.a
/bin/ln -f .dbapi_driver.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.dbapi_driver.dep
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi_driver-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libdbapi_driver-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver-dll.so
/bin/ln -f .dbapi_driver-dll.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.dbapi_driver-dll.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver'
/usr/pkg/bin/gmake -C util -j3 --jobserver-auth=fifo:/tmp//GMfifo22163 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/util'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
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/usr/pkg/bin/gmake -C ctlib -j3 --jobserver-auth=fifo:/tmp//GMfifo22163 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/ctlib'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
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/usr/pkg/bin/gmake -C ftds100 -j3 --jobserver-auth=fifo:/tmp//GMfifo22163 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds100'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
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/usr/pkg/bin/gmake -C ftds-default -j3 --jobserver-auth=fifo:/tmp//GMfifo22163 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds-default'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
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/usr/pkg/bin/gmake -C mysql -j3 --jobserver-auth=fifo:/tmp//GMfifo22163 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/mysql'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
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/usr/pkg/bin/gmake -C odbc -j3 --jobserver-auth=fifo:/tmp//GMfifo22163 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
NOTE: Skipping project odbc due to unmet requirements:
ODBC
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/odbc TMPL=ncbi_xdbapi_odbc -j3 --jobserver-auth=fifo:/tmp//GMfifo4345 mark-as-disabled
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc'
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/bin/echo 'Warning: non-existent sub-project "samples"'
Warning: non-existent sub-project "samples"
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc'
/usr/pkg/bin/gmake -C samples -j3 --jobserver-auth=fifo:/tmp//GMfifo22163 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/samples'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/samples'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver'
/usr/pkg/bin/gmake -C simple -j3 --jobserver-auth=fifo:/tmp//GMfifo12268 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/simple'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/simple'
/usr/pkg/bin/gmake -C lang_bind -j3 --jobserver-auth=fifo:/tmp//GMfifo12268 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/lang_bind'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/lang_bind'
/usr/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/tmp//GMfifo12268 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/test'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/test'
gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi'
/usr/pkg/bin/gmake -C objects -j3 --jobserver-auth=fifo:/tmp//GMfifo22236 all_r || exit 5
gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects'
gmake[2]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/Makefile.sources builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects -j3 --jobserver-auth=fifo:/tmp//GMfifo12748 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects'
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects || exit 2; \
for i in omssa access biblio blast blastdb blastxml blastxml2 cdd cn3d docsum biotree entrez2 entrezgene featdef gbseq general id1 id2 insdseq macro medlars medline mim mla mmdb1 mmdb2 mmdb3 ncbimime objprt proj pub pubmed scoremat seq seqalign seqblock seqcode seqfeat seqloc seqsplit seqres seqset submit taxon1 taxon3 tinyseq pcsubstance pcassay remap homologene seqedit seqtable seqtest trackmgr gbproj valerr valid genesbyloc; do \
if test -f "$i/$i.asn"; then \
MAKE="/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23299"; export MAKE; \
( cd $i && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh $i all; ) \
|| case "-j3 --jobserver-auth=fifo:/tmp//GMfifo23299" in *k*) ;; *) exit 2 ;; esac; \
else \
echo "Warning: $i/$i.asn not found (skipping)"; \
fi; \
done
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23299 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=omssa MODULE_PATH=objects/omssa MODULE_ASN=omssa.asn MODULE_IMPORT='objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/omssa'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m omssa.asn -M "objects/seq/seq.asn" -oA \
-oc omssa -or objects/omssa -odi -od omssa.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd omssa.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/omssa'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23299 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=access MODULE_PATH=objects/access MODULE_ASN=access.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/access'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m access.asn -M "" -oA \
-oc access -or objects/access -odi -od access.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd access.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/access'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23299 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biblio'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m biblio.asn -M "objects/general/general.asn" -oA \
-oc biblio -or objects/biblio -odi -od biblio.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd biblio.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biblio'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23299 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/scoremat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blast'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m blast.asn -M "objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn" -oA \
-oc blast -or objects/blast -odi -od blast.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd blast.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blast'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23299 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c+gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
+/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m blastdb.asn -M "objects/seqloc/seqloc.asn" -oA \
-oc blastdb -or objects/blastdb -odi -od blastdb.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd blastdb.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb'
File blastxml.module not found. Using defaults...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23299 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m blastxml.asn -M "" -oA \
-oc blastxml -or objects/blastxml -odi -od blastxml.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd blastxml.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml'
File blastxml2.module not found. Using defaults...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23299 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m blastxml2.asn -M "" -oA \
-oc blastxml2 -or objects/blastxml2 -odi -od blastxml2.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd blastxml2.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23299 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=cdd MODULE_PATH=objects/cdd MODULE_ASN=cdd.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seqalign/seqalign objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/scoremat/scoremat' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2/mmdb2.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3/mmdb3.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/cn3d.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/scoremat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/cdd'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m cdd.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn" -oA \
-oc cdd -or objects/cdd -odi -od cdd.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd cdd.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/cdd'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23299 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=cn3d MODULE_PATH=objects/cn3d MODULE_ASN=cn3d.asn MODULE_IMPORT='objects/mmdb1/mmdb1' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn' IMPFILES='objects/mmdb1/mmdb1.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
+-src/c++/src/objects/cn3d'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m cn3d.asn -M "objects/mmdb1/mmdb1.asn" -oA \
-oc cn3d -or objects/cn3d -odi -od cn3d.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd cn3d.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23299 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=docsum MODULE_PATH=objects/docsum MODULE_ASN=docsum.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/docsum'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m docsum.asn -M "" -oA \
-oc docsum -or objects/docsum -odi -od docsum.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd docsum.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/docsum'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23299 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=biotree MODULE_PATH=objects/biotree MODULE_ASN=biotree.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biotree'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m biotree.asn -M "objects/general/general.asn" -oA \
-oc biotree -or objects/biotree -odi -od biotree.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd biotree.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biotree'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23299 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m entrez2.asn -M "" -oA \
-oc entrez2 -or objects/entrez2 -odi -od entrez2.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd entrez2.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23299 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=entrezgene MODULE_PATH=objects/entrezgene MODULE_ASN=entrezgene.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m entrezgene.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn" -oA \
-oc entrezgene -or objects/entrezgene -odi -od entrezgene.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd entrezgene.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23299 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=featdef MODULE_PATH=objects/featdef MODULE_ASN=featdef.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/featdef'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m featdef.asn -M "" -oA \
-oc featdef -or objects/featdef -odi -od featdef.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd featdef.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/featdef'
/usr/pkgmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
g/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23299 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m gbseq.asn -M "" -oA \
-oc gbseq -or objects/gbseq -odi -od gbseq.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd gbseq.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23299 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m general.asn -M "" -oA \
-oc general -or objects/general -odi -od general.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd general.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23299 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/id1'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m id1.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn" -oA \
-oc id1 -or objects/id1 -odi -od id1.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd id1.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/id1'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23299 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit/seqsplit.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/id2'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m id2.asn -M "objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn" -oA \
-oc id2 -or objects/id2 -odi -od id2.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd id2.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/id2'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23299 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=insdseq MODULE_PATH=objects/insdseq MODULE_ASN=insdseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m insdseq.asn -M "" -oA \
-oc insdseq -or objects/insdseq -odi -od insdseq.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd insdseq.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23299 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biologygmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/macro'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m macro.asn -M "" -oA \
-oc macro -or objects/macro -odi -od macro.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd macro.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/macro'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23299 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/medlars'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m medlars.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA \
-oc medlars -or objects/medlars -odi -od medlars.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd medlars.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/medlars'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23299 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/medline'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m medline.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA \
-oc medline -or objects/medline -odi -od medline.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd medline.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/medline'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23299 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mim MODULE_PATH=objects/mim MODULE_ASN=mim.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mim'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m mim.asn -M "" -oA \
-oc mim -or objects/mim -odi -od mim.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd mim.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mim'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23299 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/medlars/medlars.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/pubmed.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mla'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m mla.asn -M "objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn" -oA \
-oc mla -or objects/mla -odi -od mla.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd mla.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mla'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23299 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb1 MODULE_PATH=objects/mmdb1 MODULE_ASN=mmdb1.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb2/mmdb2 objects/mmdb3/mmdb3' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2/mmdb2.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m mmdb1.asn -M "objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn" -oA \
-oc mmdb1 -or objects/mmdb1 -odi -od mmdb1.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd mmdb1.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23299 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb2 MODULE_PATH=objects/mmdb2 MODULE_ASN=mmdb2.asn MODULE_IMPORT='objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb3/mmdb3' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m mmdb2.asn -M "objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn" -oA \
-oc mmdb2 -or objects/mmdb2 -odi -od mmdb2.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd mmdb2.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23299 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb3 MODULE_PATH=objects/mmdb3 MODULE_ASN=mmdb3.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb2/mmdb2' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2/mmdb2.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m mmdb3.asn -M "objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn" -oA \
-oc mmdb3 -or objects/mmdb3 -odi -od mmdb3.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd mmdb3.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23299 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=ncbimime MODULE_PATH=objects/ncbimime MODULE_ASN=ncbimime.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/cdd/cdd' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2/mmdb2.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3/mmdb3.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/cn3d.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/cdd/cdd.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/Relea[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
seMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m ncbimime.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn" -oA \
-oc ncbimime -or objects/ncbimime -odi -od ncbimime.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd ncbimime.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23299 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=objprt MODULE_PATH=objects/objprt MODULE_ASN=objprt.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/objprt'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m objprt.asn -M "" -oA \
-oc objprt -or objects/objprt -odi -od objprt.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd objprt.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/objprt'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23299 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=proj MODULE_PATH=objects/proj MODULE_ASN=proj.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pubmed/pubmed objects/seqloc/seqloc objects/seq/seq objects/seqset/seqset' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/pubmed.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/proj'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m proj.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn" -oA \
-oc proj -or objects/proj -odi -od proj.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd proj.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/proj'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23299 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pub'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m pub.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA \
-oc pub -or objects/pub -odi -od pub.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd pub.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pub'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23299 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m pubmed.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA \
-oc pubmed -or objects/pubmed -odi -od pubmed.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd pubmed.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed'
/usr/gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23299 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m scoremat.asn -M "objects/seqset/seqset.asn objects/general/general.asn" -oA \
-oc scoremat -or objects/scoremat -odi -od scoremat.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd scoremat.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23299 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqblock/seqblock.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqres/seqres.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m seq.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn" -oA \
-oc seq -or objects/seq -odi -od seq.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd seq.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23299 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m seqalign.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \
-oc seqalign -or objects/seqalign -odi -od seqalign.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd seqalign.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23299 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directgmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
ory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqblock'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m seqblock.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \
-oc seqblock -or objects/seqblock -odi -od seqblock.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd seqblock.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqblock'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23299 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m seqcode.asn -M "" -oA \
-oc seqcode -or objects/seqcode -odi -od seqcode.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd seqcode.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23299 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m seqfeat.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn" -oA \
-oc seqfeat -or objects/seqfeat -odi -od seqfeat.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd seqfeat.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23299 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m seqloc.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn" -oA \
-oc seqloc -or objects/seqloc -odi -od seqloc.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd seqloc.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23299 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m seqsplit.asn -M "objects/seqloc/seqloc.asn obj[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
ects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn" -oA \
-oc seqsplit -or objects/seqsplit -odi -od seqsplit.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd seqsplit.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23299 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqres'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m seqres.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \
-oc seqres -or objects/seqres -odi -od seqres.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd seqres.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqres'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23299 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqset'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m seqset.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn" -oA \
-oc seqset -or objects/seqset -odi -od seqset.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd seqset.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqset'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23299 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/submit'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m submit.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn" -oA \
-oc submit -or objects/submit -odi -od submit.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd submit.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/submit'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23299 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m taxon1.asn -M "objects/seqfeat/seqfeat.asn" -oA \
-oc taxon1 -or objects/taxon1 -odi -od taxon1.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd taxon1.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1'
/usr/pkg/bin/gmake -j3 --jobserver-authgmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
=fifo:/tmp//GMfifo23299 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m taxon3.asn -M "objects/seqfeat/seqfeat.asn" -oA \
-oc taxon3 -or objects/taxon3 -odi -od taxon3.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd taxon3.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23299 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=tinyseq MODULE_PATH=objects/tinyseq MODULE_ASN=tinyseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m tinyseq.asn -M "" -oA \
-oc tinyseq -or objects/tinyseq -odi -od tinyseq.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd tinyseq.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23299 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pcsubstance MODULE_PATH=objects/pcsubstance MODULE_ASN=pcsubstance.asn MODULE_IMPORT='objects/general/general objects/pub/pub' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m pcsubstance.asn -M "objects/general/general.asn objects/pub/pub.asn" -oA \
-oc pcsubstance -or objects/pcsubstance -odi -od pcsubstance.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd pcsubstance.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23299 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pcassay MODULE_PATH=objects/pcassay MODULE_ASN=pcassay.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m pcassay.asn -M "objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn" -oA \
-oc pcassay -or objects/pcassay -odi -od pcassay.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd pcassay.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23299 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=remap MODULE_PATH=objects/remap MODULE_ASN=remap.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/remap'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m remap.asn -M "objects/seqloc/seqloc.asn" -oA \
-oc remap -or objects/remap -odi -od remap.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd remap.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/remap'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23299 -f /tmp/pkgbuild/biology/ncgmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
bi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=homologene MODULE_PATH=objects/homologene MODULE_ASN=homologene.asn MODULE_IMPORT='objects/general/general objects/seqalign/seqalign objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/homologene'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m homologene.asn -M "objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn" -oA \
-oc homologene -or objects/homologene -odi -od homologene.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd homologene.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/homologene'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23299 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m seqedit.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn" -oA \
-oc seqedit -or objects/seqedit -odi -od seqedit.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd seqedit.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23299 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqtable'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m seqtable.asn -M "objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn" -oA \
-oc seqtable -or objects/seqtable -odi -od seqtable.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd seqtable.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqtable'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23299 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqtest MODULE_PATH=objects/seqtest MODULE_ASN=seqtest.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m seqtest.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/s[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
Warning: (810.1) No service name provided for CTrackMgrClient
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
eqfeat/seqfeat.asn objects/seq/seq.asn" -oA \
-oc seqtest -or objects/seqtest -odi -od seqtest.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd seqtest.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23299 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=trackmgr MODULE_PATH=objects/trackmgr MODULE_ASN=trackmgr.asn MODULE_IMPORT='objects/seqloc/seqloc objects/general/general' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqloc/seqloc.asn objects/general/general.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m trackmgr.asn -M "objects/seqloc/seqloc.asn objects/general/general.asn" -oA \
-oc trackmgr -or objects/trackmgr -odi -od trackmgr.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd trackmgr.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23299 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=gbproj MODULE_PATH=objects/gbproj MODULE_ASN=gbproj.asn MODULE_IMPORT='objects/seq/seq objects/seqloc/seqloc objects/seqset/seqset objects/general/general objects/submit/submit objects/seqalign/seqalign' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/submit/submit.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m gbproj.asn -M "objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn" -oA \
-oc gbproj -or objects/gbproj -odi -od gbproj.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd gbproj.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23299 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/valerr'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m valerr.asn -M "" -oA \
-oc valerr -or objects/valerr -odi -od valerr.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd valerr.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/valerr'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23299 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/valid'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m valid.asn -M "" -oA \
-oc valid -or objects/valid -odi -od valid.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd valid.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/valid'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23299 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=genesbyloc MODULE_PATH=objects/genesbyloc MODULE_ASN=genesbyloc.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m genesbyloc.asn -M "" -oA \
-oc genesbyloc -or objects/genesby[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
loc -odi -od genesbyloc.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd genesbyloc.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects'
/usr/pkg/bin/gmake -C general -j3 --jobserver-auth=fifo:/tmp//GMfifo26372 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/test/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/unit_test/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/test/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/unit_test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/unit_test/Makefile.in
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general/unit_test/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general/test/Makefile
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh general all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo16201 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general TMPL=general -j3 --jobserver-auth=fifo:/tmp//GMfifo16201 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general TMPL=general -j3 --jobserver-auth=fifo:/tmp//GMfifo16201 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general TMPL=general -j3 --jobserver-auth=fifo:/tmp//GMfifo16201 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general___.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/uoconv.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general__.cpp -o general__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general___.cpp -o general___.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/uoconv.cpp -o uoconv.o
/bin/rm -f libgeneral.a .libgeneral.a.stamp
ar cr libgeneral.a general__.o general___.o uoconv.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgeneral.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libgeneral.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgeneral.a
/bin/ln -f .general.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.general.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general'
/usr/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/tmp//GMfifo16201 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general/test'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general/test'
/usr/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/tmp//GMfifo16201 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general/unit_test'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general/unit_test'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general'
/usr/pkg/bin/gmake -C biblio -j3 --jobserver-auth=fifo:/tmp//GMfifo26372 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biblio && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh biblio all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo13686 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biblio'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biblio'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biblio'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biblio'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biblio TMPL=biblio -j3 --jobserver-auth=fifo:/tmp//GMfifo13686 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biblio TMPL=biblio -j3 --jobserver-auth=fifo:/tmp//GMfifo13686 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biblio TMPL=biblio -j3 --jobserver-auth=fifo:/tmp//GMfifo13686 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio___.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/citation_base.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio__.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio__.cpp -o biblio__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio___.cpp -o biblio___.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/citation_base.cpp -o citation_base.o
/bin/rm -f libbiblio.a .libbiblio.a.stamp
ar cr libbiblio.a biblio__.o biblio___.o citation_base.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libbiblio.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libbiblio.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libbiblio.a
/bin/ln -f .biblio.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.biblio.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio'
/usr/pkg/bin/gmake -C medline -j3 --jobserver-auth=fifo:/tmp//GMfifo26372 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/medline && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh medline all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo6316 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/medline'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/medline'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/medline'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/medline'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/medline TMPL=medline -j3 --jobserver-auth=fifo:/tmp//GMfifo6316 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/medline TMPL=medline -j3 --jobserver-auth=fifo:/tmp//GMfifo6316 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/medline TMPL=medline -j3 --jobserver-auth=fifo:/tmp//GMfifo6316 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline__.cpp -o medline__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline___.cpp -o medline___.o
/bin/rm -f libmedline.a .libmedline.a.stamp
ar cr libmedline.a medline__.o medline___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedline.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libmedline.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libmedline.a
/bin/ln -f .medline.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.medline.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline'
/usr/pkg/bin/gmake -C pub -j3 --jobserver-auth=fifo:/tmp//GMfifo26372 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pub && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh pub all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo9935 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pub'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pub'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pub'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pub'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pub TMPL=pub -j3 --jobserver-auth=fifo:/tmp//GMfifo9935 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pub TMPL=pub -j3 --jobserver-auth=fifo:/tmp//GMfifo9935 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pub TMPL=pub -j3 --jobserver-auth=fifo:/tmp//GMfifo9935 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub___.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub__.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub__.cpp -o pub__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub___.cpp -o pub___.o
/bin/rm -f libpub.a .libpub.a.stamp
ar cr libpub.a pub__.o pub___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpub.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libpub.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libpub.a
/bin/ln -f .pub.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.pub.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub'
/usr/pkg/bin/gmake -C seqcode -j3 --jobserver-auth=fifo:/tmp//GMfifo26372 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh seqcode all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo3224 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode TMPL=seqcode -j3 --jobserver-auth=fifo:/tmp//GMfifo3224 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode TMPL=seqcode -j3 --jobserver-auth=fifo:/tmp//GMfifo3224 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode TMPL=seqcode -j3 --jobserver-auth=fifo:/tmp//GMfifo3224 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode/seqcode__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode/seqcode___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode/seqcode__.cpp -o seqcode__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode/seqcode___.cpp -o seqcode___.o
/bin/rm -f libseqcode.a .libseqcode.a.stamp
ar cr libseqcode.a seqcode__.o seqcode___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqcode.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libseqcode.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libseqcode.a
/bin/ln -f .seqcode.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.seqcode.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode'
/usr/pkg/bin/gmake -C seq -j3 --jobserver-auth=fifo:/tmp//GMfifo26372 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/test/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/unit_test/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/test/Makefile.in
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/unit_test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/unit_test/Makefile.in
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq/test/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq/unit_test/Makefile
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/Makefile.sources builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq -j3 --jobserver-auth=fifo:/tmp//GMfifo1995 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq'
status=0 ; \
MAKE="/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo25410"; \
export MAKE; \
for x in seqalign seqblock seqfeat seqloc seqres seqtable; do \
d=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../$x ; \
(cd $d && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh) || status=9 ; \
test -f ${x}__.cpp || \
echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \
test -f ${x}___.cpp || \
echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \
done ; \
exit $status
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo25410 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign'
gmake[6]: Nothing to be done for 'all'.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo25410 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqblock'
gmake[6]: Nothing to be done for 'all'.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqblock'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo25410 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat'
gmake[6]: Nothing to be done for 'all'.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo25410 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc'
gmake[6]: Nothing to be done for 'all'.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo25410 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATgmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
OOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqres'
gmake[6]: Nothing to be done for 'all'.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqres'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo25410 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqtable'
gmake[6]: Nothing to be done for 'all'.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqtable'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq'
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh seq all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo28006 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqblock/seqblock.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqres/seqres.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq TMPL=seq -j3 --jobserver-auth=fifo:/tmp//GMfifo28006 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq TMPL=seq -j3 --jobserver-auth=fifo:/tmp//GMfifo28006 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq TMPL=seq -j3 --jobserver-auth=fifo:/tmp//GMfifo28006 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:3,
from seqalign__.cpp:1:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Dense_seg.cpp: In member function 'ncbi::objects::CDense_seg_Base::TDim ncbi::objects::CDense_seg::CheckNumRows() const':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Dense_seg.cpp:92:13: warning: comparison of integer expressions of different signedness: 'const TDim' {aka 'const int'} and 'std::vector<ncbi::CRef<ncbi::objects::CSeq_id> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
92 | if (dim != GetIds().size()) {
| ~~~~^~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Dense_seg.cpp: In member function 'ncbi::objects::CDense_seg_Base::TNumseg ncbi::objects::CDense_seg::CheckNumSegs() const':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Dense_seg.cpp:117:21: warning: comparison of integer expressions of different signedness: 'std::vector<unsigned int>::size_type' {aka 'long unsigned int'} and 'const TDim' {aka 'const int'} [-Wsign-compare]
117 | if (lens.size() != numsegs) {
| ~~~~~~~~~~~~^~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Dense_seg.cpp:127:42: warning: comparison of integer expressions of different signedness: 'std::vector<int>::size_type' {aka 'long unsigned int'} and 'const TDim' {aka 'const int'} [-Wsign-compare]
127 | if (widths.size() && widths.size() != numrows) {
| ~~~~~~~~~~~~~~^~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Dense_seg.cpp: In member function 'void ncbi::objects::CDense_seg::RemapToLoc(ncbi::objects::CDense_seg_Base::TDim, const ncbi::objects::CSeq_loc&, bool)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Dense_seg.cpp:1018:28: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'ncbi::objects::CDense_seg_Base::TDim' {aka 'int'} [-Wsign-compare]
1018 | row_i < numrows; ++row_i, ++tmp_idx) {
| ~~~~~~^~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Dense_seg.cpp: In member function 'ncbi::CRef<ncbi::objects::CDense_seg> ncbi::objects::CDense_seg::FillUnaligned() const':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Dense_seg.cpp:1214:32: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CDense_seg_Base::TNumseg' {aka 'int'} and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
1214 | for ( ; extra_seg < extra_segs.size() && extra_segs[extra_seg] == seg; ++new_seg, ++extra_seg) {
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:9,
from seqalign__.cpp:1:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp: In member function 'void ncbi::objects::CSeq_align::RemapToLoc(ncbi::objects::CSeq_align_Base::TDim, const ncbi::objects::CSeq_loc&, bool)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1382:69: warning: 'void ncbi::objects::CDense_seg::RemapToLoc(ncbi::objects::CDense_seg_Base::TDim, const ncbi::objects::CSeq_loc&, bool)' is deprecated [-Wdeprecated-declarations]
1382 | SetSegs().SetDenseg().RemapToLoc(row, dst_loc, ignore_strand);
| ^
In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:3,
from seqalign__.cpp:1:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Dense_seg.cpp:901:6: note: declared here
901 | void CDense_seg::RemapToLoc(TDim row, const CSeq_loc& loc,
| ^~~~~~~~~~
In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:9,
from seqalign__.cpp:1:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1386:62: warning: 'void ncbi::objects::CStd_seg::RemapToLoc(ncbi::objects::CStd_seg_Base::TDim, const ncbi::objects::CSeq_loc&, bool)' is deprecated [-Wdeprecated-declarations]
1386 | (*std_it)->RemapToLoc(row, dst_loc, ignore_strand);
| ^
In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:42,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:9,
from seqalign__.cpp:1:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Std_seg.hpp:79:26: note: declared here
79 | NCBI_DEPRECATED void RemapToLoc(TDim row,
| ^~~~~~~~~~
In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:9,
from seqalign__.cpp:1:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1391:68: warning: 'void ncbi::objects::CSeq_align::RemapToLoc(ncbi::objects::CSeq_align_Base::TDim, const ncbi::objects::CSeq_loc&, bool)' is deprecated [-Wdeprecated-declarations]
1391 | (*seq_align_it)->RemapToLoc(row, dst_loc, ignore_strand);
| ^
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1365:6: note: declared here
1365 | void CSeq_align::RemapToLoc(TDim row,
| ^~~~~~~~~~
In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:9,
from seqalign__.cpp:1:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp: In function 'ncbi::TSeqPos ncbi::objects::s_GetAlignmentLength(const ncbi::objects::CSeq_align&, const ncbi::CRangeCollection<unsigned int>&, bool)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1893:52: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CDense_seg_Base::TNumseg' {aka 'int'} and 'std::vector<unsigned int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
1893 | for (CDense_seg::TNumseg i = 0; i < ds.GetLens().size();
| ~~^~~~~~~~~~~~~~~~~~~~~
In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:42,
from seqfeat__.cpp:1:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqfeat/RNA_ref.cpp: In function 'ncbi::CTempString ncbi::objects::s_AaName(int)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqfeat/RNA_ref.cpp:124:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long unsigned int'} [-Wsign-compare]
124 | if (idx > 0 && idx < ArraySize(sc_TrnaList)) {
| ~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqfeat/RNA_ref.cpp: In function 'void ncbi::objects::s_SetTrnaProduct(ncbi::objects::CTrna_ext&, const string&, std::string&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqfeat/RNA_ref.cpp:186:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long unsigned int'} [-Wsign-compare]
186 | for (int i = 0; i < ArraySize(sc_TrnaList); ++i) {
| ~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48,
from seqfeat__.cpp:1:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp: In function 'ncbi::objects::CCountries::EStateCleanup ncbi::objects::s_DoUSAStateCleanup(std::string&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp:4481:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
4481 | for ( int j = 0; j < components.size(); j++ ) {
| ~~^~~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp:4518:16: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
4518 | if ( j == match) continue;
| ~~^~~~~~~~
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq__.cpp.
Updating dependency information for seqalign__.cpp.
Updating dependency information for seqblock__.cpp.
Updating dependency information for seqfeat__.cpp.
Updating dependency information for seqloc__.cpp.
Updating dependency information for seqres__.cpp.
Updating dependency information for seqtable__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq___.cpp.
Updating dependency information for seqalign___.cpp.
Updating dependency information for seqblock___.cpp.
Updating dependency information for seqfeat___.cpp.
Updating dependency information for seqloc___.cpp.
Updating dependency information for seqres___.cpp.
Updating dependency information for seqtable___.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqport_util.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_id_tree.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_id_handle.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_id_mapper.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_loc_mapper_base.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqlocinfo.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/so_map.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_loc_from_string.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq__.cpp -o seq__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 seqalign__.cpp -o seqalign__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 seqblock__.cpp -o seqblock__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 seqfeat__.cpp -o seqfeat__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 seqloc__.cpp -o seqloc__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 seqres__.cpp -o seqres__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c+/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqport_util.cpp: In member function 'ncbi::CRef<ncbi::objects::CSeqportUtil_implementation::CWrapper_2D<unsigned char> > ncbi::objects::CSeqportUtil_implementation::InitFastIupacnaNcbi2na()':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqport_util.cpp:1681:16: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
1681 | if((ch >= start_at) && (ch < (start_at + size)))
| ~~~^~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqport_util.cpp:1681:36: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
1681 | if((ch >= start_at) && (ch < (start_at + size)))
| ~~~^~~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqport_util.cpp: In member function 'ncbi::CRef<ncbi::objects::CSeqportUtil_implementation::CWrapper_2D<unsigned char> > ncbi::objects::CSeqportUtil_implementation::InitFastIupacnaNcbi4na()':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqport_util.cpp:1704:16: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
1704 | if((ch >= start_at) && (ch < (start_at + size)))
| ~~~^~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqport_util.cpp:1704:36: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
1704 | if((ch >= start_at) && (ch < (start_at + size)))
| ~~~^~~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqport_util.cpp: In member function 'ncbi::CRef<ncbi::objects::CSeqportUtil_implementation::CWrapper_2D<unsigned char> > ncbi::objects::CSeqportUtil_implementation::InitFastNcbi4naNcbi2na()':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqport_util.cpp:1731:20: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
1731 | if((n1 >= start_at) && (n1 < start_at + size))
| ~~~^~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqport_util.cpp:1731:40: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
1731 | if((n1 >= start_at) && (n1 < start_at + size))
| ~~~^~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqport_util.cpp:1735:20: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
1735 | if((n2 >= start_at) && (n2 < start_at + size))
| ~~~^~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqport_util.cpp:1735:40: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
1735 | if((n2 >= start_at) && (n2 < start_at + size))
| ~~~^~~~~~~~~~~~~~~~~
+/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 seqtable__.cpp -o seqtable__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq___.cpp -o seq___.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 seqalign___.cpp -o seqalign___.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 seqblock___.cpp -o seqblock___.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 seqfeat___.cpp -o seqfeat___.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 seqloc___.cpp -o seqloc___.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 seqres___.cpp -o seqres___.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 seqtable___.cpp -o seqtable___.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqport_util.cpp -o seqport_util.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_id_tree.cpp -o seq_id_tree.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFS/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_id_tree.cpp: In member function 'virtual void ncbi::objects::CSeq_id_Giim_Tree::FindMatchStr(const string&, ncbi::objects::CSeq_id_Which_Tree::TSeq_id_MatchList&) const':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_id_tree.cpp:2965:12: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=]
2965 | catch (CStringException) {
| ^~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp: In member function 'void ncbi::objects::CSeq_align_Mapper_Base::x_GetDstStd(ncbi::CRef<ncbi::objects::CSeq_align>&) const':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp:1506:32: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
1506 | if ( row_n == p_row ) {
| ~~~~~~^~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp: In member function 'void ncbi::objects::CSeq_align_Mapper_Base::x_GetDstDisc(ncbi::CRef<ncbi::objects::CSeq_align>&) const':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp:1652:16: warning: catching polymorphic type 'class ncbi::objects::CAnnotMapperException' by value [-Wcatch-value=]
1652 | catch (CAnnotMapperException) {
| ^~~~~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp: In member function 'ssize_t ncbi::objects::CSeq_align_Mapper_Base::x_GetPartialDenseg(ncbi::CRef<ncbi::objects::CSeq_align>&, size_t) const':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp:2618:23: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
2618 | for (int s = 0; s < start_seg && start_seg_it != m_Segs.end();
| ~~^~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp: In member function 'void ncbi::objects::CSeq_align_Mapper_Base::x_ConvToDstDisc(ncbi::CRef<ncbi::objects::CSeq_align>&) const':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp:2801:30: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'std::__cxx11::list<ncbi::objects::SAlignment_Segment>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
2801 | while (seg >= 0 && seg < m_Segs.size()) {
| ~~~~^~~~~~~~~~~~~~~
ET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_id_handle.cpp -o seq_id_handle.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_id_mapper.cpp -o seq_id_mapper.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_loc_mapper_base.cpp -o seq_loc_mapper_base.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp -o seq_align_mapper_base.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqlocinfo.cpp -o seqlocinfo.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/so_map.cpp -o so_map.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_loc_from_string.cpp -o seq_loc_from_string.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp -o seq_loc_reverse_complementer.o
/bin/rm -f libseq.a .libseq.a.stamp
ar cr libseq.a seq__.o seqalign__.o seqblock__.o seqfeat__.o seqloc__.o seqres__.o seqtable__.o seq___.o seqalign___.o seqblock___.o seqfeat___.o seqloc___.o seqres___.o seqtable___.o seqport_util.o seq_id_tree.o seq_id_handle.o seq_id_mapper.o seq_loc_mapper_base.o seq_align_mapper_base.o seqlocinfo.o so_map.o seq_loc_from_string.o seq_loc_reverse_complementer.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseq.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libseq.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libseq.a
/bin/ln -f .seq.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.seq.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq'
/usr/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/tmp//GMfifo28006 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq/test'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq/test'
/usr/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/tmp//GMfifo28006 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq/unit_test'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq/unit_test'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq'
/usr/pkg/bin/gmake -C seqset -j3 --jobserver-auth=fifo:/tmp//GMfifo26372 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/test/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/test/Makefile.in
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset/test/Makefile
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqset && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh seqset all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo19891 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqset'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqset'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqset'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqset'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqset TMPL=seqset -j3 --jobserver-auth=fifo:/tmp//GMfifo19891 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqset TMPL=seqset -j3 --jobserver-auth=fifo:/tmp//GMfifo19891 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqset TMPL=seqset -j3 --jobserver-auth=fifo:/tmp//GMfifo19891 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset___.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/gb_release_file.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset__.cpp -o seqset__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset___.cpp -o seqset___.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/gb_release_file.cpp -o gb_release_file.o
/bin/rm -f libseqset.a .libseqset.a.stamp
ar cr libseqset.a seqset__.o seqset___.o gb_release_file.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqset.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libseqset.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libseqset.a
/bin/ln -f .seqset.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.seqset.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset'
/usr/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/tmp//GMfifo19891 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset/test'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset/test'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset'
/usr/pkg/bin/gmake -C submit -j3 --jobserver-auth=fifo:/tmp//GMfifo26372 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/submit && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh submit all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo592 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/submit'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/submit'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/submit'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/submit'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/submit TMPL=submit -j3 --jobserver-auth=fifo:/tmp//GMfifo592 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/submit TMPL=submit -j3 --jobserver-auth=fifo:/tmp//GMfifo592 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/submit TMPL=submit -j3 --jobserver-auth=fifo:/tmp//GMfifo592 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/submit/submit__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/submit/submit___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/submit/submit__.cpp -o submit__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/submit/submit___.cpp -o submit___.o
/bin/rm -f libsubmit.a .libsubmit.a.stamp
ar cr libsubmit.a submit__.o submit___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsubmit.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libsubmit.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libsubmit.a
/bin/ln -f .submit.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.submit.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit'
/usr/pkg/bin/gmake -C seqedit -j3 --jobserver-auth=fifo:/tmp//GMfifo26372 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh seqedit all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo19175 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit TMPL=seqedit -j3 --jobserver-auth=fifo:/tmp//GMfifo19175 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit TMPL=seqedit -j3 --jobserver-auth=fifo:/tmp//GMfifo19175 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit TMPL=seqedit -j3 --jobserver-auth=fifo:/tmp//GMfifo19175 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit/seqedit__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit/seqedit___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit/seqedit__.cpp -o seqedit__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit/seqedit___.cpp -o seqedit___.o
/bin/rm -f libseqedit.a .libseqedit.a.stamp
ar cr libseqedit.a seqedit__.o seqedit___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqedit.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libseqedit.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libseqedit.a
/bin/ln -f .seqedit.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.seqedit.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit'
/usr/pkg/bin/gmake -C seqsplit -j3 --jobserver-auth=fifo:/tmp//GMfifo26372 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh seqsplit all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo11771 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit TMPL=seqsplit -j3 --jobserver-auth=fifo:/tmp//GMfifo11771 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit TMPL=seqsplit -j3 --jobserver-auth=fifo:/tmp//GMfifo11771 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit TMPL=seqsplit -j3 --jobserver-auth=fifo:/tmp//GMfifo11771 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit/seqsplit__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit/seqsplit___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit/seqsplit__.cpp -o seqsplit__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit/seqsplit___.cpp -o seqsplit___.o
/bin/rm -f libseqsplit.a .libseqsplit.a.stamp
ar cr libseqsplit.a seqsplit__.o seqsplit___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqsplit.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libseqsplit.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libseqsplit.a
/bin/ln -f .seqsplit.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.seqsplit.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit'
/usr/pkg/bin/gmake -C id1 -j3 --jobserver-auth=fifo:/tmp//GMfifo26372 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/id1/test/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/id1/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/id1/test/Makefile.in
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1/test/Makefile
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/id1 && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh id1 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo1430 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/id1'
gmake[5]: Nothing to be done for 'all'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/id1'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/id1'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/id1'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/id1 TMPL=id1 -j3 --jobserver-auth=fifo:/tmp//GMfifo1430 export-headers
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/id1 TMPL=id1cli -j3 --jobserver-auth=fifo:/tmp//GMfifo1430 export-headers
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/id1 TMPL=id1 -j3 --jobserver-auth=fifo:/tmp//GMfifo1430 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/id1 TMPL=id1cli -j3 --jobserver-auth=fifo:/tmp//GMfifo1430 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/id1 TMPL=id1 -j3 --jobserver-auth=fifo:/tmp//GMfifo1430 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1__.cpp -o id1__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1___.cpp -o id1___.o
/bin/rm -f libid1.a .libid1.a.stamp
ar cr libid1.a id1__.o id1___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libid1.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libid1.a
/bin/ln -f .id1.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.id1.dep
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/id1 TMPL=id1cli -j3 --jobserver-auth=fifo:/tmp//GMfifo1430 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1_client.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1_client_.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1_client.cpp -o id1_client.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1_client_.cpp -o id1_client_.o
/bin/rm -f libid1cli.a .libid1cli.a.stamp
ar cr libid1cli.a id1_client.o id1_client_.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1cli.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libid1cli.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libid1cli.a
/bin/ln -f .id1cli.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.id1cli.dep
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1'
/usr/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/tmp//GMfifo10847 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1/test'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1/test'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1'
/usr/pkg/bin/gmake -C id2 -j3 --jobserver-auth=fifo:/tmp//GMfifo26372 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/id2 && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh id2 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo85 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit/seqsplit.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/id2'
gmake[5]: Nothing to be done for 'all'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/id2'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/id2'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/id2'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/id2 TMPL=id2 -j3 --jobserver-auth=fifo:/tmp//GMfifo85 export-headers
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/id2 TMPL=id2cli -j3 --jobserver-auth=fifo:/tmp//GMfifo85 export-headers
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/id2 TMPL=id2 -j3 --jobserver-auth=fifo:/tmp//GMfifo85 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/id2 TMPL=id2cli -j3 --jobserver-auth=fifo:/tmp//GMfifo85 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/id2 TMPL=id2 -j3 --jobserver-auth=fifo:/tmp//GMfifo85 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2___.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2__.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2__.cpp -o id2__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2___.cpp -o id2___.o
/bin/rm -f libid2.a .libid2.a.stamp
ar cr libid2.a id2__.o id2___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libid2.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libid2.a
/bin/ln -f .id2.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.id2.dep
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/id2 TMPL=id2cli -j3 --jobserver-auth=fifo:/tmp//GMfifo85 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2_client.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2_client_.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2_client.cpp -o id2_client.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2_client_.cpp -o id2_client_.o
/bin/rm -f libid2cli.a .libid2cli.a.stamp
ar cr libid2cli.a id2_client.o id2_client_.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2cli.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libid2cli.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libid2cli.a
/bin/ln -f .id2cli.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.id2cli.dep
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2'
/usr/pkg/bin/gmake -C entrez2 -j3 --jobserver-auth=fifo:/tmp//GMfifo26372 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/demo/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/demo/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/demo/Makefile.in
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT demo/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2/demo/Makefile
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2 && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh entrez2 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo17336 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2'
gmake[5]: Nothing to be done for 'all'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2 TMPL=entrez2 -j3 --jobserver-auth=fifo:/tmp//GMfifo17336 export-headers
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2 TMPL=entrez2cli -j3 --jobserver-auth=fifo:/tmp//GMfifo17336 export-headers
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2 TMPL=entrez2 -j3 --jobserver-auth=fifo:/tmp//GMfifo17336 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2 TMPL=entrez2cli -j3 --jobserver-auth=fifo:/tmp//GMfifo17336 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2 TMPL=entrez2 -j3 --jobserver-auth=fifo:/tmp//GMfifo17336 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2__.cpp -o entrez2__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2___.cpp -o entrez2___.o
/bin/rm -f libentrez2.a .libentrez2.a.stamp
ar cr libentrez2.a entrez2__.o entrez2___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libentrez2.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libentrez2.a
/bin/ln -f .entrez2.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.entrez2.dep
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2 TMPL=entrez2cli -j3 --jobserver-auth=fifo:/tmp//GMfifo17336 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2_client.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2_client_.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2_client.cpp -o entrez2_client.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2_client_.cpp -o entrez2_client_.o
/bin/rm -f libentrez2cli.a .libentrez2cli.a.stamp
ar cr libentrez2cli.a entrez2_client.o entrez2_client_.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2cli.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libentrez2cli.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libentrez2cli.a
/bin/ln -f .entrez2cli.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.entrez2cli.dep
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2'
/usr/pkg/bin/gmake -C demo -j3 --jobserver-auth=fifo:/tmp//GMfifo21812 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2/demo'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2/demo'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2'
/usr/pkg/bin/gmake -C pubmed -j3 --jobserver-auth=fifo:/tmp//GMfifo26372 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh pubmed all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo18073 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed TMPL=pubmed -j3 --jobserver-auth=fifo:/tmp//GMfifo18073 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed TMPL=pubmed -j3 --jobserver-auth=fifo:/tmp//GMfifo18073 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed TMPL=pubmed -j3 --jobserver-auth=fifo:/tmp//GMfifo18073 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/pubmed__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/pubmed___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/pubmed__.cpp -o pubmed__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/pubmed___.cpp -o pubmed___.o
/bin/rm -f libpubmed.a .libpubmed.a.stamp
ar cr libpubmed.a pubmed__.o pubmed___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpubmed.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libpubmed.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libpubmed.a
/bin/ln -f .pubmed.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.pubmed.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed'
/usr/pkg/bin/gmake -C medlars -j3 --jobserver-auth=fifo:/tmp//GMfifo26372 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/medlars && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh medlars all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo3673 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/medlars'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/medlars'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/medlars'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/medlars'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/medlars TMPL=medlars -j3 --jobserver-auth=fifo:/tmp//GMfifo3673 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/medlars TMPL=medlars -j3 --jobserver-auth=fifo:/tmp//GMfifo3673 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/medlars TMPL=medlars -j3 --jobserver-auth=fifo:/tmp//GMfifo3673 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/medlars/medlars__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/medlars/medlars___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/medlars/medlars__.cpp -o medlars__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/medlars/medlars___.cpp -o medlars___.o
/bin/rm -f libmedlars.a .libmedlars.a.stamp
ar cr libmedlars.a medlars__.o medlars___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedlars.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libmedlars.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libmedlars.a
/bin/ln -f .medlars.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.medlars.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars'
/usr/pkg/bin/gmake -C mla -j3 --jobserver-auth=fifo:/tmp//GMfifo26372 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mla && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh mla all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo18802 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/medlars/medlars.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/pubmed.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mla'
gmake[5]: Nothing to be done for 'all'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mla'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mla'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mla'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mla TMPL=mla -j3 --jobserver-auth=fifo:/tmp//GMfifo18802 export-headers
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mla TMPL=mlacli -j3 --jobserver-auth=fifo:/tmp//GMfifo18802 export-headers
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mla TMPL=mla -j3 --jobserver-auth=fifo:/tmp//GMfifo18802 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mla TMPL=mlacli -j3 --jobserver-auth=fifo:/tmp//GMfifo18802 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mla TMPL=mla -j3 --jobserver-auth=fifo:/tmp//GMfifo18802 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla__.cpp -o mla__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla___.cpp -o mla___.o
/bin/rm -f libmla.a .libmla.a.stamp
ar cr libmla.a mla__.o mla___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmla.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libmla.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libmla.a
/bin/ln -f .mla.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.mla.dep
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mla TMPL=mlacli -j3 --jobserver-auth=fifo:/tmp//GMfifo18802 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla_client.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla_client_.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla_client.cpp -o mla_client.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla_client_.cpp -o mla_client_.o
/bin/rm -f libmlacli.a .libmlacli.a.stamp
ar cr libmlacli.a mla_client.o mla_client_.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmlacli.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libmlacli.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libmlacli.a
/bin/ln -f .mlacli.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.mlacli.dep
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla'
/usr/pkg/bin/gmake -C proj -j3 --jobserver-auth=fifo:/tmp//GMfifo26372 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/proj && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh proj all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo15667 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=proj MODULE_PATH=objects/proj MODULE_ASN=proj.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pubmed/pubmed objects/seqloc/seqloc objects/seq/seq objects/seqset/seqset' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/pubmed.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/proj'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/proj'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/proj'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/proj'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/proj TMPL=proj -j3 --jobserver-auth=fifo:/tmp//GMfifo15667 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/proj TMPL=proj -j3 --jobserver-auth=fifo:/tmp//GMfifo15667 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/proj TMPL=proj -j3 --jobserver-auth=fifo:/tmp//GMfifo15667 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/proj/proj__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/proj/proj___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/proj/proj__.cpp -o proj__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/proj/proj___.cpp -o proj___.o
/bin/rm -f libproj.a .libproj.a.stamp
ar cr libproj.a proj__.o proj___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libproj.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libproj.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libproj.a
/bin/ln -f .proj.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.proj.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj'
/usr/pkg/bin/gmake -C scoremat -j3 --jobserver-auth=fifo:/tmp//GMfifo26372 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh scoremat all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo28006 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat TMPL=scoremat -j3 --jobserver-auth=fifo:/tmp//GMfifo28006 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat TMPL=scoremat -j3 --jobserver-auth=fifo:/tmp//GMfifo28006 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat TMPL=scoremat -j3 --jobserver-auth=fifo:/tmp//GMfifo28006 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/scoremat__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/scoremat___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/scoremat__.cpp -o scoremat__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/scoremat___.cpp -o scoremat___.o
/bin/rm -f libscoremat.a .libscoremat.a.stamp
ar cr libscoremat.a scoremat__.o scoremat___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libscoremat.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libscoremat.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libscoremat.a
/bin/ln -f .scoremat.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.scoremat.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat'
/usr/pkg/bin/gmake -C blast -j3 --jobserver-auth=fifo:/tmp//GMfifo26372 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blast && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh blast all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo11718 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/scoremat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blast'
gmake[5]: Nothing to be done for 'all'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blast TMPL=blast -j3 --jobserver-auth=fifo:/tmp//GMfifo11718 export-headers
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blast TMPL=xnetblastcli -j3 --jobserver-auth=fifo:/tmp//GMfifo11718 export-headers
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blast TMPL=blast -j3 --jobserver-auth=fifo:/tmp//GMfifo11718 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blast TMPL=xnetblastcli -j3 --jobserver-auth=fifo:/tmp//GMfifo11718 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blast TMPL=blast -j3 --jobserver-auth=fifo:/tmp//GMfifo11718 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blast__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blast/names.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blast___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blast__.cpp -o blast__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blast___.cpp -o blast___.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blast/names.cpp -o names.o
/bin/rm -f libxnetblast.a .libxnetblast.a.stamp
ar cr libxnetblast.a blast__.o blast___.o names.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblast.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxnetblast.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxnetblast.a
/bin/ln -f .xnetblast.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xnetblast.dep
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blast TMPL=xnetblastcli -j3 --jobserver-auth=fifo:/tmp//GMfifo11718 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blastclient.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blastclient_.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blastclient.cpp -o blastclient.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blastclient_.cpp -o blastclient_.o
/bin/rm -f libxnetblastcli.a .libxnetblastcli.a.stamp
ar cr libxnetblastcli.a blastclient.o blastclient_.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblastcli.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxnetblastcli.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxnetblastcli.a
/bin/ln -f .xnetblastcli.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xnetblastcli.dep
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast'
/usr/pkg/bin/gmake -C blastdb -j3 --jobserver-auth=fifo:/tmp//GMfifo26372 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh blastdb all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo1577 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb TMPL=blastdb -j3 --jobserver-auth=fifo:/tmp//GMfifo1577 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb TMPL=blastdb -j3 --jobserver-auth=fifo:/tmp//GMfifo1577 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb TMPL=blastdb -j3 --jobserver-auth=fifo:/tmp//GMfifo1577 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb/blastdb__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb/blastdb___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb/blastdb__.cpp -o blastdb__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb/blastdb___.cpp -o blastdb___.o
/bin/rm -f libblastdb.a .libblastdb.a.stamp
ar cr libblastdb.a blastdb__.o blastdb___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libblastdb.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libblastdb.a
/bin/ln -f .blastdb.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.blastdb.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb'
/usr/pkg/bin/gmake -C blastxml -j3 --jobserver-auth=fifo:/tmp//GMfifo26372 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh blastxml all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23268 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml TMPL=blastxml -j3 --jobserver-auth=fifo:/tmp//GMfifo23268 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml TMPL=blastxml -j3 --jobserver-auth=fifo:/tmp//GMfifo23268 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml TMPL=blastxml -j3 --jobserver-auth=fifo:/tmp//GMfifo23268 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml/blastxml__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml/blastxml___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml/blastxml__.cpp -o blastxml__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml/blastxml___.cpp -o blastxml___.o
/bin/rm -f libblastxml.a .libblastxml.a.stamp
ar cr libblastxml.a blastxml__.o blastxml___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libblastxml.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libblastxml.a
/bin/ln -f .blastxml.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.blastxml.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml'
/usr/pkg/bin/gmake -C blastxml2 -j3 --jobserver-auth=fifo:/tmp//GMfifo26372 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2 && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh blastxml2 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo13218 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2 TMPL=blastxml2 -j3 --jobserver-auth=fifo:/tmp//GMfifo13218 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2 TMPL=blastxml2 -j3 --jobserver-auth=fifo:/tmp//GMfifo13218 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2 TMPL=blastxml2 -j3 --jobserver-auth=fifo:/tmp//GMfifo13218 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2/blastxml2__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2/blastxml2___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2/blastxml2__.cpp -o blastxml2__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2/blastxml2___.cpp -o blastxml2___.o
/bin/rm -f libblastxml2.a .libblastxml2.a.stamp
ar cr libblastxml2.a blastxml2__.o blastxml2___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml2.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libblastxml2.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libblastxml2.a
/bin/ln -f .blastxml2.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.blastxml2.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2'
/usr/pkg/bin/gmake -C mmdb -j3 --jobserver-auth=fifo:/tmp//GMfifo26372 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb/Makefile.sources builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -j3 --jobserver-auth=fifo:/tmp//GMfifo9881 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb'
status=0 ; \
MAKE="/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo4955"; \
export MAKE; \
for x in mmdb1 mmdb2 mmdb3; do \
d=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb/../$x ; \
(cd $d && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh) || status=9 ; \
test -f ${x}__.cpp || \
echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \
test -f ${x}___.cpp || \
echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \
done ; \
exit $status
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo4955 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb1 MODULE_PATH=objects/mmdb1 MODULE_ASN=mmdb1.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb2/mmdb2 objects/mmdb3/mmdb3' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2/mmdb2.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1'
gmake[6]: Nothing to be done for 'all'.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo4955 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb2 MODULE_PATH=objects/mmdb2 MODULE_ASN=mmdb2.asn MODULE_IMPORT='objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb3/mmdb3' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2'
gmake[6]: Nothing to be done for 'all'.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2'
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo4955 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb3 MODULE_PATH=objects/mmdb3 MODULE_ASN=mmdb3.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb2/mmdb2' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2/mmdb2.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3'
gmake[6]: Nothing to be done for 'all'.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb TMPL=mmdb -j3 --jobserver-auth=fifo:/tmp//GMfifo40 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb TMPL=mmdb -j3 --jobserver-auth=fifo:/tmp//GMfifo40 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb TMPL=mmdb -j3 --jobserver-auth=fifo:/tmp//GMfifo40 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb'
Updating dependency information for mmdb1__.cpp.
Updating dependency information for mmdb3__.cpp.
Updating dependency information for mmdb2__.cpp.
Updating dependency information for mmdb1___.cpp.
Updating dependency information for mmdb2___.cpp.
Updating dependency information for mmdb3___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 mmdb1__.cpp -o mmdb1__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 mmdb2__.cpp -o mmdb2__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 mmdb3__.cpp -o mmdb3__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 mmdb1___.cpp -o mmdb1___.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 mmdb2___.cpp -o mmdb2___.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 mmdb3___.cpp -o mmdb3___.o
/bin/rm -f libmmdb.a .libmmdb.a.stamp
ar cr libmmdb.a mmdb1__.o mmdb2__.o mmdb3__.o mmdb1___.o mmdb2___.o mmdb3___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmmdb.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libmmdb.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libmmdb.a
/bin/ln -f .mmdb.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.mmdb.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb'
/usr/pkg/bin/gmake -C cn3d -j3 --jobserver-auth=fifo:/tmp//GMfifo26372 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh cn3d all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo3608 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=cn3d MODULE_PATH=objects/cn3d MODULE_ASN=cn3d.asn MODULE_IMPORT='objects/mmdb1/mmdb1' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn' IMPFILES='objects/mmdb1/mmdb1.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d TMPL=cn3d -j3 --jobserver-auth=fifo:/tmp//GMfifo3608 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d TMPL=cn3d -j3 --jobserver-auth=fifo:/tmp//GMfifo3608 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d TMPL=cn3d -j3 --jobserver-auth=fifo:/tmp//GMfifo3608 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/cn3d__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/cn3d___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/cn3d__.cpp -o cn3d__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/cn3d___.cpp -o cn3d___.o
/bin/rm -f libcn3d.a .libcn3d.a.stamp
ar cr libcn3d.a cn3d__.o cn3d___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcn3d.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libcn3d.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libcn3d.a
/bin/ln -f .cn3d.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.cn3d.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d'
/usr/pkg/bin/gmake -C cdd -j3 --jobserver-auth=fifo:/tmp//GMfifo26372 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/cdd && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh cdd all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo25863 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=cdd MODULE_PATH=objects/cdd MODULE_ASN=cdd.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seqalign/seqalign objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/scoremat/scoremat' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2/mmdb2.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3/mmdb3.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/cn3d.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/scoremat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/cdd'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/cdd'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/cdd'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/cdd'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/cdd TMPL=cdd -j3 --jobserver-auth=fifo:/tmp//GMfifo25863 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/cdd TMPL=cdd -j3 --jobserver-auth=fifo:/tmp//GMfifo25863 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/cdd TMPL=cdd -j3 --jobserver-auth=fifo:/tmp//GMfifo25863 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/cdd/cdd__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/cdd/cdd___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/cdd/cdd__.cpp -o cdd__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/cdd/cdd___.cpp -o cdd___.o
/bin/rm -f libcdd.a .libcdd.a.stamp
ar cr libcdd.a cdd__.o cdd___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcdd.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libcdd.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libcdd.a
/bin/ln -f .cdd.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.cdd.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd'
/usr/pkg/bin/gmake -C ncbimime -j3 --jobserver-auth=fifo:/tmp//GMfifo26372 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime/test/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime/test/Makefile.in
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime/test/Makefile
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh ncbimime all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo22433 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=ncbimime MODULE_PATH=objects/ncbimime MODULE_ASN=ncbimime.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/cdd/cdd' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2/mmdb2.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3/mmdb3.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/cn3d.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/cdd/cdd.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime TMPL=ncbimime -j3 --jobserver-auth=fifo:/tmp//GMfifo22433 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime TMPL=ncbimime -j3 --jobserver-auth=fifo:/tmp//GMfifo22433 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime TMPL=ncbimime -j3 --jobserver-auth=fifo:/tmp//GMfifo22433 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime/ncbimime__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime/ncbimime___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime/ncbimime__.cpp -o ncbimime__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime/ncbimime___.cpp -o ncbimime___.o
/bin/rm -f libncbimime.a .libncbimime.a.stamp
ar cr libncbimime.a ncbimime__.o ncbimime___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbimime.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libncbimime.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbimime.a
/bin/ln -f .ncbimime.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbimime.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime'
/usr/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/tmp//GMfifo22433 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime/test'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime/test'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime'
/usr/pkg/bin/gmake -C pcsubstance -j3 --jobserver-auth=fifo:/tmp//GMfifo26372 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh pcsubstance all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo11048 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pcsubstance MODULE_PATH=objects/pcsubstance MODULE_ASN=pcsubstance.asn MODULE_IMPORT='objects/general/general objects/pub/pub' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance TMPL=pcsubstance -j3 --jobserver-auth=fifo:/tmp//GMfifo11048 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance TMPL=pcsubstance -j3 --jobserver-auth=fifo:/tmp//GMfifo11048 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance TMPL=pcsubstance -j3 --jobserver-auth=fifo:/tmp//GMfifo11048 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance/pcsubstance__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance/pcsubstance___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance/pcsubstance__.cpp -o pcsubstance__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance/pcsubstance___.cpp -o pcsubstance___.o
/bin/rm -f libpcsubstance.a .libpcsubstance.a.stamp
ar cr libpcsubstance.a pcsubstance__.o pcsubstance___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpcsubstance.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libpcsubstance.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libpcsubstance.a
/bin/ln -f .pcsubstance.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.pcsubstance.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance'
/usr/pkg/bin/gmake -C pcassay -j3 --jobserver-auth=fifo:/tmp//GMfifo26372 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh pcassay all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo15196 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pcassay MODULE_PATH=objects/pcassay MODULE_ASN=pcassay.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay TMPL=pcassay -j3 --jobserver-auth=fifo:/tmp//GMfifo15196 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay TMPL=pcassay -j3 --jobserver-auth=fifo:/tmp//GMfifo15196 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay TMPL=pcassay -j3 --jobserver-auth=fifo:/tmp//GMfifo15196 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay/pcassay__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay/pcassay___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay/pcassay__.cpp -o pcassay__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay/pcassay___.cpp -o pcassay___.o
/bin/rm -f libpcassay.a .libpcassay.a.stamp
ar cr libpcassay.a pcassay__.o pcassay___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpcassay.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libpcassay.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libpcassay.a
/bin/ln -f .pcassay.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.pcassay.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay'
/usr/pkg/bin/gmake -C pcassay2 -j3 --jobserver-auth=fifo:/tmp//GMfifo26372 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2 && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh pcassay2 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo18005 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pcassay2 MODULE_PATH=objects/pcassay2 MODULE_ASN=pcassay2.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m pcassay2.asn -M "objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn" -oA \
-oc pcassay2 -or objects/pcassay2 -odi -od pcassay2.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd pcassay2.dump \
datatool: 2.23.2
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2 TMPL=pcassay2 -j3 --jobserver-auth=fifo:/tmp//GMfifo18005 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2 TMPL=pcassay2 -j3 --jobserver-auth=fifo:/tmp//GMfifo18005 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2 TMPL=pcassay2 -j3 --jobserver-auth=fifo:/tmp//GMfifo18005 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2/pcassay2__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2/pcassay2___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2/pcassay2__.cpp -o pcassay2__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2/pcassay2___.cpp -o pcassay2___.o
/bin/rm -f libpcassay2.a .libpcassay2.a.stamp
ar cr libpcassay2.a pcassay2__.o pcassay2___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpcassay2.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libpcassay2.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libpcassay2.a
/bin/ln -f .pcassay2.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.pcassay2.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2'
/usr/pkg/bin/gmake -C gbseq -j3 --jobserver-auth=fifo:/tmp//GMfifo26372 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh gbseq all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo26049 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq TMPL=gbseq -j3 --jobserver-auth=fifo:/tmp//GMfifo26049 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq TMPL=gbseq -j3 --jobserver-auth=fifo:/tmp//GMfifo26049 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq TMPL=gbseq -j3 --jobserver-auth=fifo:/tmp//GMfifo26049 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq/gbseq__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq/gbseq___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq/gbseq__.cpp -o gbseq__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq/gbseq___.cpp -o gbseq___.o
/bin/rm -f libgbseq.a .libgbseq.a.stamp
ar cr libgbseq.a gbseq__.o gbseq___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbseq.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libgbseq.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgbseq.a
/bin/ln -f .gbseq.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.gbseq.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq'
/usr/pkg/bin/gmake -C insdseq -j3 --jobserver-auth=fifo:/tmp//GMfifo26372 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh insdseq all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo2836 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=insdseq MODULE_PATH=objects/insdseq MODULE_ASN=insdseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq TMPL=insdseq -j3 --jobserver-auth=fifo:/tmp//GMfifo2836 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq TMPL=insdseq -j3 --jobserver-auth=fifo:/tmp//GMfifo2836 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq TMPL=insdseq -j3 --jobserver-auth=fifo:/tmp//GMfifo2836 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq/insdseq__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq/insdseq___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq/insdseq__.cpp -o insdseq__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq/insdseq___.cpp -o insdseq___.o
/bin/rm -f libinsdseq.a .libinsdseq.a.stamp
ar cr libinsdseq.a insdseq__.o insdseq___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libinsdseq.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libinsdseq.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libinsdseq.a
/bin/ln -f .insdseq.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.insdseq.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq'
/usr/pkg/bin/gmake -C tinyseq -j3 --jobserver-auth=fifo:/tmp//GMfifo26372 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh tinyseq all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo15097 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=tinyseq MODULE_PATH=objects/tinyseq MODULE_ASN=tinyseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq TMPL=tinyseq -j3 --jobserver-auth=fifo:/tmp//GMfifo15097 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq TMPL=tinyseq -j3 --jobserver-auth=fifo:/tmp//GMfifo15097 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq TMPL=tinyseq -j3 --jobserver-auth=fifo:/tmp//GMfifo15097 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq/tinyseq__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq/tinyseq___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq/tinyseq__.cpp -o tinyseq__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq/tinyseq___.cpp -o tinyseq___.o
/bin/rm -f libtinyseq.a .libtinyseq.a.stamp
ar cr libtinyseq.a tinyseq__.o tinyseq___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtinyseq.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libtinyseq.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libtinyseq.a
/bin/ln -f .tinyseq.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.tinyseq.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq'
/usr/pkg/bin/gmake -C biotree -j3 --jobserver-auth=fifo:/tmp//GMfifo26372 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biotree && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh biotree all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo25091 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=biotree MODULE_PATH=objects/biotree MODULE_ASN=biotree.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biotree'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biotree'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biotree'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biotree'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biotree TMPL=biotree -j3 --jobserver-auth=fifo:/tmp//GMfifo25091 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biotree TMPL=biotree -j3 --jobserver-auth=fifo:/tmp//GMfifo25091 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biotree TMPL=biotree -j3 --jobserver-auth=fifo:/tmp//GMfifo25091 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biotree/biotree__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biotree/biotree___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biotree/biotree__.cpp -o biotree__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/biotree/biotree___.cpp -o biotree___.o
/bin/rm -f libbiotree.a .libbiotree.a.stamp
ar cr libbiotree.a biotree__.o biotree___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libbiotree.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libbiotree.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libbiotree.a
/bin/ln -f .biotree.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.biotree.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree'
/usr/pkg/bin/gmake -C entrezgene -j3 --jobserver-auth=fifo:/tmp//GMfifo26372 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/unit_test/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/unit_test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/unit_test/Makefile.in
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene/unit_test/Makefile
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh entrezgene all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo24178 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=entrezgene MODULE_PATH=objects/entrezgene MODULE_ASN=entrezgene.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene TMPL=entrezgene -j3 --jobserver-auth=fifo:/tmp//GMfifo24178 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene TMPL=entrezgene -j3 --jobserver-auth=fifo:/tmp//GMfifo24178 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene TMPL=entrezgene -j3 --jobserver-auth=fifo:/tmp//GMfifo24178 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/entrezgene__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/entrezgene___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/entrezgene__.cpp -o entrezgene__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/entrezgene___.cpp -o entrezgene___.o
/bin/rm -f libentrezgene.a .libentrezgene.a.stamp
ar cr libentrezgene.a entrezgene__.o entrezgene___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrezgene.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libentrezgene.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libentrezgene.a
/bin/ln -f .entrezgene.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.entrezgene.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene'
/usr/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/tmp//GMfifo24178 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene/unit_test'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene/unit_test'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene'
/usr/pkg/bin/gmake -C omssa -j3 --jobserver-auth=fifo:/tmp//GMfifo26372 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/omssa && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh omssa all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23904 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=omssa MODULE_PATH=objects/omssa MODULE_ASN=omssa.asn MODULE_IMPORT='objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/omssa'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/omssa'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/omssa'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/omssa'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/omssa TMPL=omssa -j3 --jobserver-auth=fifo:/tmp//GMfifo23904 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/omssa TMPL=omssa -j3 --jobserver-auth=fifo:/tmp//GMfifo23904 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/omssa TMPL=omssa -j3 --jobserver-auth=fifo:/tmp//GMfifo23904 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/omssa/omssa__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/omssa/omssa___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/omssa/omssa__.cpp -o omssa__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/omssa/omssa___.cpp -o omssa___.o
/bin/rm -f libomssa.a .libomssa.a.stamp
ar cr libomssa.a omssa__.o omssa___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libomssa.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libomssa.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libomssa.a
/bin/ln -f .omssa.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.omssa.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa'
/usr/pkg/bin/gmake -C remap -j3 --jobserver-auth=fifo:/tmp//GMfifo26372 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/remap && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh remap all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo7337 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=remap MODULE_PATH=objects/remap MODULE_ASN=remap.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/remap'
gmake[5]: Nothing to be done for 'all'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/remap'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/remap'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/remap'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/remap TMPL=remap -j3 --jobserver-auth=fifo:/tmp//GMfifo7337 export-headers
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/remap TMPL=remapcli -j3 --jobserver-auth=fifo:/tmp//GMfifo7337 export-headers
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/remap TMPL=remap -j3 --jobserver-auth=fifo:/tmp//GMfifo7337 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/remap TMPL=remapcli -j3 --jobserver-auth=fifo:/tmp//GMfifo7337 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/remap TMPL=remap -j3 --jobserver-auth=fifo:/tmp//GMfifo7337 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap__.cpp -o remap__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap___.cpp -o remap___.o
/bin/rm -f libremap.a .libremap.a.stamp
ar cr libremap.a remap__.o remap___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libremap.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libremap.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libremap.a
/bin/ln -f .remap.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.remap.dep
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/remap TMPL=remapcli -j3 --jobserver-auth=fifo:/tmp//GMfifo7337 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap_client.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap_client_.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap_client.cpp -o remap_client.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap_client_.cpp -o remap_client_.o
/bin/rm -f libremapcli.a .libremapcli.a.stamp
ar cr libremapcli.a remap_client.o remap_client_.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libremapcli.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libremapcli.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libremapcli.a
/bin/ln -f .remapcli.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.remapcli.dep
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap'
/usr/pkg/bin/gmake -C seqtest -j3 --jobserver-auth=fifo:/tmp//GMfifo26372 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh seqtest all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo13870 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqtest MODULE_PATH=objects/seqtest MODULE_ASN=seqtest.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest TMPL=seqtest -j3 --jobserver-auth=fifo:/tmp//GMfifo13870 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest TMPL=seqtest -j3 --jobserver-auth=fifo:/tmp//GMfifo13870 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest TMPL=seqtest -j3 --jobserver-auth=fifo:/tmp//GMfifo13870 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest/seqtest__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest/seqtest___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest/seqtest__.cpp -o seqtest__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest/seqtest___.cpp -o seqtest___.o
/bin/rm -f libseqtest.a .libseqtest.a.stamp
ar cr libseqtest.a seqtest__.o seqtest___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqtest.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libseqtest.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libseqtest.a
/bin/ln -f .seqtest.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.seqtest.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest'
/usr/pkg/bin/gmake -C taxon1 -j3 --jobserver-auth=fifo:/tmp//GMfifo26372 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1 && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh taxon1 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo15683 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1'
gmake[5]: Nothing to be done for 'all'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1 TMPL=taxon1 -j3 --jobserver-auth=fifo:/tmp//GMfifo15683 export-headers
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1 TMPL=local_taxon -j3 --jobserver-auth=fifo:/tmp//GMfifo15683 export-headers
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1 TMPL=taxon1 -j3 --jobserver-auth=fifo:/tmp//GMfifo15683 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1 TMPL=local_taxon -j3 --jobserver-auth=fifo:/tmp//GMfifo15683 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1 TMPL=taxon1 -j3 --jobserver-auth=fifo:/tmp//GMfifo15683 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/cache.cpp: In member function 'void ncbi::objects::CDomainStorage::AddField(int, int, const string&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/cache.cpp:787:24: warning: comparison of integer expressions of different signedness: 'std::vector<int>::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
787 | if( m_types.size() <= field_no ) {
| ~~~~~~~~~~~~~~~^~~~~~~~~~~
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/taxon1__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/taxon1___.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/taxon1.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/cache.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/utils.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/ctreecont.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/taxon1__.cpp -o taxon1__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/taxon1___.cpp -o taxon1___.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/taxon1.cpp -o taxon1.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/cache.cpp -o cache.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/utils.cpp -o utils.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/ctreecont.cpp -o ctreecont.o
/bin/rm -f libtaxon1.a .libtaxon1.a.stamp
ar cr libtaxon1.a taxon1__.o taxon1___.o taxon1.o cache.o utils.o ctreecont.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon1.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libtaxon1.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libtaxon1.a
/bin/ln -f .taxon1.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.taxon1.dep
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1 TMPL=local_taxon -j3 --jobserver-auth=fifo:/tmp//GMfifo15683 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/local_taxon.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/local_taxon.cpp -o local_taxon.o
/bin/rm -f liblocal_taxon.a .liblocal_taxon.a.stamp
ar cr liblocal_taxon.a local_taxon.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f liblocal_taxon.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f liblocal_taxon.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/liblocal_taxon.a
/bin/ln -f .local_taxon.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.local_taxon.dep
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1'
/usr/pkg/bin/gmake -C taxon3 -j3 --jobserver-auth=fifo:/tmp//GMfifo26372 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3 && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh taxon3 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo17853 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3 TMPL=taxon3 -j3 --jobserver-auth=fifo:/tmp//GMfifo17853 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3 TMPL=taxon3 -j3 --jobserver-auth=fifo:/tmp//GMfifo17853 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3 TMPL=taxon3 -j3 --jobserver-auth=fifo:/tmp//GMfifo17853 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3/taxon3__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3/taxon3.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3/taxon3___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3/taxon3__.cpp -o taxon3__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3/taxon3___.cpp -o taxon3___.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3/taxon3.cpp -o taxon3.o
/bin/rm -f libtaxon3.a .libtaxon3.a.stamp
ar cr libtaxon3.a taxon3__.o taxon3___.o taxon3.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon3.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libtaxon3.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libtaxon3.a
/bin/ln -f .taxon3.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.taxon3.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3'
/usr/pkg/bin/gmake -C gbproj -j3 --jobserver-auth=fifo:/tmp//GMfifo26372 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh gbproj all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo13508 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=gbproj MODULE_PATH=objects/gbproj MODULE_ASN=gbproj.asn MODULE_IMPORT='objects/seq/seq objects/seqloc/seqloc objects/seqset/seqset objects/general/general objects/submit/submit objects/seqalign/seqalign' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/submit/submit.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj TMPL=gbproj -j3 --jobserver-auth=fifo:/tmp//GMfifo13508 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj TMPL=gbproj -j3 --jobserver-auth=fifo:/tmp//GMfifo13508 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj TMPL=gbproj -j3 --jobserver-auth=fifo:/tmp//GMfifo13508 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj/gbproj__.cpp:9:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj/ProjectFolder.cpp: In member function 'void ncbi::objects::CProjectFolder::RemoveAllChildItems()':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj/ProjectFolder.cpp:310:27: warning: unused variable 'item' [-Wunused-variable]
310 | CProjectItem& item = **it;
| ^~~~
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj/gbproj__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj/gbproj___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj/gbproj__.cpp -o gbproj__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj/gbproj___.cpp -o gbproj___.o
/bin/rm -f libgbproj.a .libgbproj.a.stamp
ar cr libgbproj.a gbproj__.o gbproj___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbproj.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libgbproj.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgbproj.a
/bin/ln -f .gbproj.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.gbproj.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj'
/usr/pkg/bin/gmake -C trackmgr -j3 --jobserver-auth=fifo:/tmp//GMfifo26372 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh trackmgr all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo11688 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=trackmgr MODULE_PATH=objects/trackmgr MODULE_ASN=trackmgr.asn MODULE_IMPORT='objects/seqloc/seqloc objects/general/general' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqloc/seqloc.asn objects/general/general.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr'
gmake[5]: Nothing to be done for 'all'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgr -j3 --jobserver-auth=fifo:/tmp//GMfifo11688 export-headers
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgrcli -j3 --jobserver-auth=fifo:/tmp//GMfifo11688 export-headers
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgrgridcli -j3 --jobserver-auth=fifo:/tmp//GMfifo11688 export-headers
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgr -j3 --jobserver-auth=fifo:/tmp//GMfifo11688 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgrcli -j3 --jobserver-auth=fifo:/tmp//GMfifo11688 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgrgridcli -j3 --jobserver-auth=fifo:/tmp//GMfifo11688 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgr -j3 --jobserver-auth=fifo:/tmp//GMfifo11688 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr__.cpp -o trackmgr__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr___.cpp -o trackmgr___.o
/bin/rm -f libtrackmgr.a .libtrackmgr.a.stamp
ar cr libtrackmgr.a trackmgr__.o trackmgr___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgr.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libtrackmgr.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libtrackmgr.a
/bin/ln -f .trackmgr.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.trackmgr.dep
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgrcli -j3 --jobserver-auth=fifo:/tmp//GMfifo11688 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr_client.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr_client_.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr_client.cpp -o trackmgr_client.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr_client_.cpp -o trackmgr_client_.o
/bin/rm -f libtrackmgrcli.a .libtrackmgrcli.a.stamp
ar cr libtrackmgrcli.a trackmgr_client.o trackmgr_client_.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgrcli.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libtrackmgrcli.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libtrackmgrcli.a
/bin/ln -f .trackmgrcli.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.trackmgrcli.dep
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgrgridcli -j3 --jobserver-auth=fifo:/tmp//GMfifo11688 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/tms_exception.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/blast_client.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/displaytrack_client.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/createusertrack_client.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/createremotetrack_client.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/removeusertrack_client.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/item_resolver_client.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/switch_context_client.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/track_attrvalue_client.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackset_client.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/createtrackset_client.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/supported_assemblies_client.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/tms_exception.cpp -o tms_exception.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/blast_client.cpp -o blast_client.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/displaytrack_client.cpp -o displaytrack_client.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/createusertrack_client.cpp -o createusertrack_client.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/createremotetrack_client.cpp -o createremotetrack_client.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/removeusertrack_client.cpp -o removeusertrack_client.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/item_resolver_client.cpp -o item_resolver_client.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/switch_context_client.cpp -o switch_context_client.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/track_attrvalue_client.cpp -o track_attrvalue_client.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackset_client.cpp -o trackset_client.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/createtrackset_client.cpp -o createtrackset_client.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/supported_assemblies_client.cpp -o supported_assemblies_client.o
/bin/rm -f libtrackmgrgridcli.a .libtrackmgrgridcli.a.stamp
ar cr libtrackmgrgridcli.a tms_exception.o blast_client.o displaytrack_client.o createusertrack_client.o createremotetrack_client.o removeusertrack_client.o item_resolver_client.o switch_context_client.o track_attrvalue_client.o trackset_client.o createtrackset_client.o supported_assemblies_client.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgrgridcli.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libtrackmgrgridcli.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libtrackmgrgridcli.a
/bin/ln -f .trackmgrgridcli.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.trackmgrgridcli.dep
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr'
/usr/pkg/bin/gmake -C valerr -j3 --jobserver-auth=fifo:/tmp//GMfifo26372 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/valerr && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh valerr all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo13483 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/valerr'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/valerr'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/valerr'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/valerr'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/valerr TMPL=valerr -j3 --jobserver-auth=fifo:/tmp//GMfifo13483 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/valerr TMPL=valerr -j3 --jobserver-auth=fifo:/tmp//GMfifo13483 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/valerr TMPL=valerr -j3 --jobserver-auth=fifo:/tmp//GMfifo13483 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/valerr/valerr__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/valerr/valerr___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/valerr/valerr__.cpp -o valerr__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/valerr/valerr___.cpp -o valerr___.o
/bin/rm -f libvalerr.a .libvalerr.a.stamp
ar cr libvalerr.a valerr__.o valerr___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalerr.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libvalerr.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libvalerr.a
/bin/ln -f .valerr.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.valerr.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr'
/usr/pkg/bin/gmake -C valid -j3 --jobserver-auth=fifo:/tmp//GMfifo26372 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/valid && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh valid all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo279 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/valid'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/valid'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/valid'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/valid'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/valid TMPL=valid -j3 --jobserver-auth=fifo:/tmp//GMfifo279 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/valid TMPL=valid -j3 --jobserver-auth=fifo:/tmp//GMfifo279 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/valid TMPL=valid -j3 --jobserver-auth=fifo:/tmp//GMfifo279 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/valid/valid__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/valid/valid___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/valid/valid__.cpp -o valid__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/valid/valid___.cpp -o valid___.o
/bin/rm -f libvalid.a .libvalid.a.stamp
ar cr libvalid.a valid__.o valid___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalid.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libvalid.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libvalid.a
/bin/ln -f .valid.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.valid.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid'
/usr/pkg/bin/gmake -C access -j3 --jobserver-auth=fifo:/tmp//GMfifo26372 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/access && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh access all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo4475 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=access MODULE_PATH=objects/access MODULE_ASN=access.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/access'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/access'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/access'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/access'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/access TMPL=access -j3 --jobserver-auth=fifo:/tmp//GMfifo4475 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/access TMPL=access -j3 --jobserver-auth=fifo:/tmp//GMfifo4475 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/access TMPL=access -j3 --jobserver-auth=fifo:/tmp//GMfifo4475 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/access/access__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/access/access___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/access/access__.cpp -o access__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/access/access___.cpp -o access___.o
/bin/rm -f libaccess.a .libaccess.a.stamp
ar cr libaccess.a access__.o access___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libaccess.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libaccess.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libaccess.a
/bin/ln -f .access.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.access.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access'
/usr/pkg/bin/gmake -C docsum -j3 --jobserver-auth=fifo:/tmp//GMfifo26372 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/docsum && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh docsum all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo20194 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=docsum MODULE_PATH=objects/docsum MODULE_ASN=docsum.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/docsum'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/docsum'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/docsum'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/docsum'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/docsum TMPL=docsum -j3 --jobserver-auth=fifo:/tmp//GMfifo20194 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/docsum TMPL=docsum -j3 --jobserver-auth=fifo:/tmp//GMfifo20194 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/docsum TMPL=docsum -j3 --jobserver-auth=fifo:/tmp//GMfifo20194 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/docsum/docsum__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/docsum/docsum___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/docsum/docsum__.cpp -o docsum__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/docsum/docsum___.cpp -o docsum___.o
/bin/rm -f libdocsum.a .libdocsum.a.stamp
ar cr libdocsum.a docsum__.o docsum___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdocsum.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libdocsum.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdocsum.a
/bin/ln -f .docsum.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.docsum.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum'
/usr/pkg/bin/gmake -C featdef -j3 --jobserver-auth=fifo:/tmp//GMfifo26372 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/featdef && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh featdef all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo20879 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=featdef MODULE_PATH=objects/featdef MODULE_ASN=featdef.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/featdef'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/featdef'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/featdef'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/featdef'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/featdef TMPL=featdef -j3 --jobserver-auth=fifo:/tmp//GMfifo20879 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/featdef TMPL=featdef -j3 --jobserver-auth=fifo:/tmp//GMfifo20879 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/featdef TMPL=featdef -j3 --jobserver-auth=fifo:/tmp//GMfifo20879 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/featdef/featdef__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/featdef/featdef___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/featdef/featdef__.cpp -o featdef__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/featdef/featdef___.cpp -o featdef___.o
/bin/rm -f libfeatdef.a .libfeatdef.a.stamp
ar cr libfeatdef.a featdef__.o featdef___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libfeatdef.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libfeatdef.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libfeatdef.a
/bin/ln -f .featdef.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.featdef.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef'
/usr/pkg/bin/gmake -C genomecoll -j3 --jobserver-auth=fifo:/tmp//GMfifo26372 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh genome_collection all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo13693 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA \
-oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll'
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh gencoll_client all
Waiting for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/make_asn.lock.
Acquired /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/make_asn.lock for PID 14149 (make_asn)
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo13693 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA \
-oc gencoll_client -or objects/genomecoll -odi -od gencoll_client.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd gencoll_client.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll TMPL=genome_collection -j3 --jobserver-auth=fifo:/tmp//GMfifo13693 export-headers
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll TMPL=gencoll_client -j3 --jobserver-auth=fifo:/tmp//GMfifo13693 export-headers
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll TMPL=genome_collection -j3 --jobserver-auth=fifo:/tmp//GMfifo13693 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll TMPL=gencoll_client -j3 --jobserver-auth=fifo:/tmp//GMfifo13693 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll TMPL=genome_collection -j3 --jobserver-auth=fifo:/tmp//GMfifo13693 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genome_collection__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genome_collection___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genome_collection__.cpp -o genome_collection__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genome_collection___.cpp -o genome_collection___.o
/bin/rm -f libgenome_collection.a .libgenome_collection.a.stamp
ar cr libgenome_collection.a genome_collection__.o genome_collection___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenome_collection.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libgenome_collection.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgenome_collection.a
/bin/ln -f .genome_collection.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.genome_collection.dep
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll TMPL=gencoll_client -j3 --jobserver-auth=fifo:/tmp//GMfifo13693 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp: In member function 'void ncbi::objects::CGenomicCollectionsService::x_ConfigureConnection()':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp:97:21: warning: 'void ncbi::CRPCClient_Base::SetRetryLimit(unsigned int)' is deprecated [-Wdeprecated-declarations]
97 | SetRetryLimit(40);
| ^
In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/serial/rpcbase.hpp:44,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/objects/genomecoll/genomic_collections_cli_.hpp:50,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/objects/genomecoll/genomic_collections_cli.hpp:42,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp:41:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/serial/rpcbase_impl.hpp:92:10: note: declared here
92 | void SetRetryLimit(unsigned int n) { SetTryLimit(n); }
| ^~~~~~~~~~~~~
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gencoll_client__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gencoll_client___.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genomic_collections_cli_.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/cached_assembly.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gencoll_client__.cpp -o gencoll_client__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gencoll_client___.cpp -o gencoll_client___.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp -o genomic_collections_cli.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genomic_collections_cli_.cpp -o genomic_collections_cli_.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/cached_assembly.cpp -o cached_assembly.o
/bin/rm -f libgencoll_client.a .libgencoll_client.a.stamp
ar cr libgencoll_client.a gencoll_client__.o gencoll_client___.o genomic_collections_cli.o genomic_collections_cli_.o cached_assembly.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgencoll_client.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libgencoll_client.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgencoll_client.a
/bin/ln -f .gencoll_client.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.gencoll_client.dep
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll'
/usr/pkg/bin/gmake -C gc_cli -j3 --jobserver-auth=fifo:/tmp//GMfifo8674 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gc_cli TMPL=gc_cli -j3 --jobserver-auth=fifo:/tmp//GMfifo7025 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gc_cli TMPL=gc_cli -j3 --jobserver-auth=fifo:/tmp//GMfifo7025 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gc_cli/gc_cli.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=gc_cli -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gc_cli/gc_cli.cpp -o gc_cli.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 gc_cli.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lgencoll_client-static -lgenome_collection-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lsqlitewrapp-static -lxser-static -lxconnect-static -lxcompress-static -lxutil-static -lxncbi-static -lsqlite3 -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -lpthread -o gc_cli
strip gc_cli
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f gc_cli /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin
/bin/ln -f gc_cli /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/gc_cli
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll'
/usr/pkg/bin/gmake -C homologene -j3 --jobserver-auth=fifo:/tmp//GMfifo26372 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/homologene && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh homologene all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo5211 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=homologene MODULE_PATH=objects/homologene MODULE_ASN=homologene.asn MODULE_IMPORT='objects/general/general objects/seqalign/seqalign objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/homologene'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/homologene'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/homologene'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/homologene'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/homologene TMPL=homologene -j3 --jobserver-auth=fifo:/tmp//GMfifo5211 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/homologene TMPL=homologene -j3 --jobserver-auth=fifo:/tmp//GMfifo5211 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/homologene TMPL=homologene -j3 --jobserver-auth=fifo:/tmp//GMfifo5211 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/homologene/homologene__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/homologene/homologene___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/homologene/homologene__.cpp -o homologene__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/homologene/homologene___.cpp -o homologene___.o
/bin/rm -f libhomologene.a .libhomologene.a.stamp
ar cr libhomologene.a homologene__.o homologene___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libhomologene.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libhomologene.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libhomologene.a
/bin/ln -f .homologene.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.homologene.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene'
/usr/pkg/bin/gmake -C mim -j3 --jobserver-auth=fifo:/tmp//GMfifo26372 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mim && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh mim all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo13444 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mim MODULE_PATH=objects/mim MODULE_ASN=mim.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mim'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mim'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mim'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mim'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: jobserver mkfifo: /tmp//GMfifo7618: File exists
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mim TMPL=mim -j3 --jobserver-auth=fifo:/tmp//GMfifo13444 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mim TMPL=mim -j3 --jobserver-auth=fifo:/tmp//GMfifo13444 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mim TMPL=mim -j3 --jobserver-auth=fifo:/tmp//GMfifo13444 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mim/mim__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mim/mim___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mim/mim__.cpp -o mim__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/mim/mim___.cpp -o mim___.o
/bin/rm -f libmim.a .libmim.a.stamp
ar cr libmim.a mim__.o mim___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmim.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libmim.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libmim.a
/bin/ln -f .mim.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.mim.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim'
/usr/pkg/bin/gmake -C objprt -j3 --jobserver-auth=fifo:/tmp//GMfifo26372 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/objprt && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh objprt all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo12337 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=objprt MODULE_PATH=objects/objprt MODULE_ASN=objprt.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/objprt'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/objprt'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/objprt'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/objprt'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/objprt TMPL=objprt -j3 --jobserver-auth=fifo:/tmp//GMfifo12337 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/objprt TMPL=objprt -j3 --jobserver-auth=fifo:/tmp//GMfifo12337 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/objprt TMPL=objprt -j3 --jobserver-auth=fifo:/tmp//GMfifo12337 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/objprt/objprt__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/objprt/objprt___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/objprt/objprt__.cpp -o objprt__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/objprt/objprt___.cpp -o objprt___.o
/bin/rm -f libobjprt.a .libobjprt.a.stamp
ar cr libobjprt.a objprt__.o objprt___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libobjprt.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libobjprt.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libobjprt.a
/bin/ln -f .objprt.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.objprt.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt'
/usr/pkg/bin/gmake -C variation -j3 --jobserver-auth=fifo:/tmp//GMfifo26372 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/variation && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh variation all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo18804 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/variation'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA \
-oc variation -or objects/variation -odi -od variation.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd variation.dump \
datatool: 2.23.2
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/variation'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/variation'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/variation'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/variation TMPL=variation -j3 --jobserver-auth=fifo:/tmp//GMfifo18804 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/variation TMPL=variation -j3 --jobserver-auth=fifo:/tmp//GMfifo18804 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/variation TMPL=variation -j3 --jobserver-auth=fifo:/tmp//GMfifo18804 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/variation/variation__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/variation/variation___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/variation/variation__.cpp -o variation__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/variation/variation___.cpp -o variation___.o
/bin/rm -f libvariation.a .libvariation.a.stamp
ar cr libvariation.a variation__.o variation___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvariation.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libvariation.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libvariation.a
/bin/ln -f .variation.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.variation.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation'
/usr/pkg/bin/gmake -C macro -j3 --jobserver-auth=fifo:/tmp//GMfifo26372 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/macro/unit_test/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/macro/unit_test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/macro/unit_test/Makefile.in
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro/unit_test/Makefile
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/macro && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh macro all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo27518 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/macro'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/macro'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/macro'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/macro'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/macro TMPL=macro -j3 --jobserver-auth=fifo:/tmp//GMfifo27518 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/macro TMPL=macro -j3 --jobserver-auth=fifo:/tmp//GMfifo27518 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/macro TMPL=macro -j3 --jobserver-auth=fifo:/tmp//GMfifo27518 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/macro/macro__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/macro/macro___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/macro/macro__.cpp -o macro__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/macro/macro___.cpp -o macro___.o
/bin/rm -f libmacro.a .libmacro.a.stamp
ar cr libmacro.a macro__.o macro___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmacro.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libmacro.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libmacro.a
/bin/ln -f .macro.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.macro.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro'
/usr/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/tmp//GMfifo27518 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro/unit_test'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro/unit_test'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro'
/usr/pkg/bin/gmake -C genesbyloc -j3 --jobserver-auth=fifo:/tmp//GMfifo26372 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh genesbyloc all
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo23372 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=genesbyloc MODULE_PATH=objects/genesbyloc MODULE_ASN=genesbyloc.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc'
gmake[4]: Nothing to be done for 'all'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc TMPL=genesbyloc -j3 --jobserver-auth=fifo:/tmp//GMfifo23372 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc TMPL=genesbyloc -j3 --jobserver-auth=fifo:/tmp//GMfifo23372 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc TMPL=genesbyloc -j3 --jobserver-auth=fifo:/tmp//GMfifo23372 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc/genesbyloc__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc/genesbyloc___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc/genesbyloc__.cpp -o genesbyloc__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc/genesbyloc___.cpp -o genesbyloc___.o
/bin/rm -f libgenesbyloc.a .libgenesbyloc.a.stamp
ar cr libgenesbyloc.a genesbyloc__.o genesbyloc___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenesbyloc.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libgenesbyloc.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgenesbyloc.a
/bin/ln -f .genesbyloc.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.genesbyloc.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc'
/usr/pkg/bin/gmake -C coords -j3 --jobserver-auth=fifo:/tmp//GMfifo26372 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/coords && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh objcoords all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo28947 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=objcoords MODULE_PATH=objects/coords MODULE_ASN=objcoords.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/coords'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m objcoords.asn -M "" -oA \
-oc objcoords -or objects/coords -odi -od objcoords.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd objcoords.dump \
datatool: 2.23.2
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/coords'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/coords'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/coords'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/coords TMPL=objcoords -j3 --jobserver-auth=fifo:/tmp//GMfifo28947 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/coords TMPL=objcoords -j3 --jobserver-auth=fifo:/tmp//GMfifo28947 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/coords TMPL=objcoords -j3 --jobserver-auth=fifo:/tmp//GMfifo28947 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/coords/objcoords__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/coords/objcoords___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/coords/objcoords__.cpp -o objcoords__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/coords/objcoords___.cpp -o objcoords___.o
/bin/rm -f libobjcoords.a .libobjcoords.a.stamp
ar cr libobjcoords.a objcoords__.o objcoords___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libobjcoords.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libobjcoords.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libobjcoords.a
/bin/ln -f .objcoords.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.objcoords.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords'
/usr/pkg/bin/gmake -C varrep -j3 --jobserver-auth=fifo:/tmp//GMfifo26372 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/varrep && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh varrep all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo7412 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=varrep MODULE_PATH=objects/varrep MODULE_ASN=varrep.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/varrep'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m varrep.asn -M "" -oA \
-oc varrep -or objects/varrep -odi -od varrep.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd varrep.dump \
datatool: 2.23.2
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/varrep'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/varrep'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/varrep'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/varrep TMPL=varrep -j3 --jobserver-auth=fifo:/tmp//GMfifo7412 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/varrep TMPL=varrep -j3 --jobserver-auth=fifo:/tmp//GMfifo7412 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/varrep TMPL=varrep -j3 --jobserver-auth=fifo:/tmp//GMfifo7412 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/varrep/varrep__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/varrep/varrep___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/varrep/varrep__.cpp -o varrep__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/varrep/varrep___.cpp -o varrep___.o
/bin/rm -f libvarrep.a .libvarrep.a.stamp
ar cr libvarrep.a varrep__.o varrep___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvarrep.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libvarrep.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libvarrep.a
/bin/ln -f .varrep.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.varrep.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep'
/usr/pkg/bin/gmake -C variation_libs -j3 --jobserver-auth=fifo:/tmp//GMfifo26372 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
/usr/pkg/bin/gmake -C dbsnp -j3 --jobserver-auth=fifo:/tmp//GMfifo10942 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
/usr/pkg/bin/gmake -C search_by_rsid -j3 --jobserver-auth=fifo:/tmp//GMfifo29677 all_r || exit 5
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh search_by_rsid all
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo382 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=search_by_rsid MODULE_PATH=objects/variation_libs/dbsnp/search_by_rsid MODULE_ASN=search_by_rsid.asn MODULE_IMPORT='objects/trackmgr/trackmgr objects/general/general' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/trackmgr/trackmgr.asn objects/general/general.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m search_by_rsid.asn -M "objects/trackmgr/trackmgr.asn objects/general/general.asn" -oA \
-oc search_by_rsid -or objects/variation_libs/dbsnp/search_by_rsid -odi -od search_by_rsid.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd search_by_rsid.dump \
datatool: 2.23.2
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid TMPL=search_by_rsid -j3 --jobserver-auth=fifo:/tmp//GMfifo382 export-headers
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid'
gmake[6]: Nothing to be done for 'export-headers'.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid TMPL=search_by_rsid -j3 --jobserver-auth=fifo:/tmp//GMfifo382 flag-stamps
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid'
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid TMPL=search_by_rsid -j3 --jobserver-auth=fifo:/tmp//GMfifo382 all
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid__.cpp -o search_by_rsid__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid___.cpp -o search_by_rsid___.o
/bin/rm -f libsearchbyrsid.a .libsearchbyrsid.a.stamp
ar cr libsearchbyrsid.a search_by_rsid__.o search_by_rsid___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsearchbyrsid.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libsearchbyrsid.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libsearchbyrsid.a
/bin/ln -f .searchbyrsid.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.searchbyrsid.dep
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid'
/usr/pkg/bin/gmake -C tooltip_service -j3 --jobserver-auth=fifo:/tmp//GMfifo29677 all_r || exit 5
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh dbsnp_tooltip_service all
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo11726 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=dbsnp_tooltip_service MODULE_PATH=objects/variation_libs/dbsnp/tooltip_service MODULE_ASN=dbsnp_tooltip_service.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m dbsnp_tooltip_service.asn -M "" -oA \
-oc dbsnp_tooltip_service -or objects/variation_libs/dbsnp/tooltip_service -odi -od dbsnp_tooltip_service.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd dbsnp_tooltip_service.dump \
datatool: 2.23.2
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service TMPL=dbsnp_tooltip_service -j3 --jobserver-auth=fifo:/tmp//GMfifo11726 export-headers
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service'
gmake[6]: Nothing to be done for 'export-headers'.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service TMPL=dbsnp_tooltip_service -j3 --jobserver-auth=fifo:/tmp//GMfifo11726 flag-stamps
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service'
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service TMPL=dbsnp_tooltip_service -j3 --jobserver-auth=fifo:/tmp//GMfifo11726 all
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service__.cpp -o dbsnp_tooltip_service__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service___.cpp -o dbsnp_tooltip_service___.o
/bin/rm -f libdbsnp_tooltip_service.a .libdbsnp_tooltip_service.a.stamp
ar cr libdbsnp_tooltip_service.a dbsnp_tooltip_service__.o dbsnp_tooltip_service___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbsnp_tooltip_service.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libdbsnp_tooltip_service.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbsnp_tooltip_service.a
/bin/ln -f .dbsnp_tooltip_service.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.dbsnp_tooltip_service.dep
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs'
/usr/pkg/bin/gmake -C dbsnp -j3 --jobserver-auth=fifo:/tmp//GMfifo26372 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
/usr/pkg/bin/gmake -C primary_track -j3 --jobserver-auth=fifo:/tmp//GMfifo26272 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/test/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/test/Makefile.in
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track/test/Makefile
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --protobuf dbsnp all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
grep: /grpc_cpp_plugin: No such file or directory
Warning: Skipping code generation for dbsnp.proto
because protoc is unavailable here.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
File dbsnp.module not found. Using defaults...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo6717 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.protobuf MODULE=dbsnp MODULE_PATH=objects/dbsnp/primary_track MODULE_ASN=dbsnp.proto MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/no/need/for/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track TMPL=dbsnp -j3 --jobserver-auth=fifo:/tmp//GMfifo6717 export-headers
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track TMPL=dbsnp -j3 --jobserver-auth=fifo:/tmp//GMfifo6717 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track TMPL=dbsnp -j3 --jobserver-auth=fifo:/tmp//GMfifo6717 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/dbsnp.pb.wrapper.cc.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/dbsnp.grpc.pb.wrapper.cc.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/snpptis.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_DBSNP_PTIS_EXPORTS -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/dbsnp.pb.wrapper.cc -o dbsnp.pb.wrapper.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_DBSNP_PTIS_EXPORTS -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/dbsnp.grpc.pb.wrapper.cc -o dbsnp.grpc.pb.wrapper.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_DBSNP_PTIS_EXPORTS -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/snpptis.cpp -o snpptis.o
/bin/rm -f libdbsnp_ptis.a .libdbsnp_ptis.a.stamp
ar cr libdbsnp_ptis.a dbsnp.pb.wrapper.o dbsnp.grpc.pb.wrapper.o snpptis.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbsnp_ptis.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libdbsnp_ptis.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbsnp_ptis.a
/bin/ln -f .dbsnp_ptis.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.dbsnp_ptis.dep
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track'
/usr/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/tmp//GMfifo6717 all_r || exit 5
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track/test'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track/test'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp'
gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects'
/usr/pkg/bin/gmake -C objmgr -j3 --jobserver-auth=fifo:/tmp//GMfifo22236 all_r || exit 5
gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr'
gmake[2]: warning: -j3 forced in submake: resetting jobserver mode.
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/test/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/test/Makefile.in
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/test/Makefile
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr'
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr TMPL=objmgr -j3 --jobserver-auth=fifo:/tmp//GMfifo11637 export-headers
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr'
gmake[3]: Nothing to be done for 'export-headers'.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr'
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr'
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr TMPL=objmgr -j3 --jobserver-auth=fifo:/tmp//GMfifo11637 flag-stamps
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr'
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr'
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr TMPL=objmgr -j3 --jobserver-auth=fifo:/tmp//GMfifo11637 all
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_table_setters.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_table_info.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_annot_info.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/table_field.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_map_switch.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/snp_annot_info.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_types_ci.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_loc_cvt.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_selector.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_descr_ci.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/feat_ci.cpp.
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Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_object_index.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_ci.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_info.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_info_object.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_entry_info.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_base_info.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_set_info.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_info.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_source.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/priority.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/prefetch_impl.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/prefetch_manager.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/prefetch_manager_impl.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/prefetch_actions.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/scope.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/heap_scope.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/scope_impl.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/scope_info.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_handle.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_map.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_map_ci.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_entry_ci.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_annot_ci.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_table_ci.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_entry_handle.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_set_handle.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_handle.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_annot_handle.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/align_ci.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_loader.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/handle_range.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/objmgr_exception.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/handle_range_map.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/object_manager.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_vector.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_vector_ci.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/seqdesc_ci.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_split_info.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_chunk_info.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_ci.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_type_index.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_loc_mapper.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_align_mapper.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_collector.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_loader_factory.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/mapped_feat.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_feat_handle.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_graph_handle.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_align_handle.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_assigner.cpp.
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Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/scope_transaction_impl.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/edit_commands_impl.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_edit_commands.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_entry_edit_commands.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_set_edit_commands.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/edit_saver.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/unsupp_editsaver.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/edits_db_engine.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/edits_db_saver.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_finder.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/gc_assembly_parser.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/split_parser.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_id_sort.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_table_setters.cpp -o seq_table_setters.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_table_info.cpp -o seq_table_info.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_annot_info.cpp -o seq_annot_info.o
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/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_map_switch.cpp -o seq_map_switch.o
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/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_finder.cpp -o annot_finder.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/gc_assembly_parser.cpp -o gc_assembly_parser.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/split_parser.cpp -o split_parser.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_id_sort.cpp -o seq_id_sort.o
/bin/rm -f libxobjmgr.a .libxobjmgr.a.stamp
ar cr libxobjmgr.a seq_table_setters.o seq_table_info.o seq_annot_info.o table_field.o seq_map_switch.o snp_annot_info.o annot_types_ci.o seq_loc_cvt.o annot_selector.o seq_descr_ci.o feat_ci.o graph_ci.o annot_object.o annot_object_index.o annot_ci.o tse_info.o tse_info_object.o seq_entry_info.o bioseq_base_info.o bioseq_set_info.o bioseq_info.o data_source.o priority.o prefetch_impl.o prefetch_manager.o prefetch_manager_impl.o prefetch_actions.o scope.o heap_scope.o scope_impl.o scope_info.o tse_handle.o seq_map.o seq_map_ci.o seq_entry_ci.o seq_annot_ci.o seq_table_ci.o seq_entry_handle.o bioseq_set_handle.o bioseq_handle.o seq_annot_handle.o align_ci.o data_loader.o handle_range.o objmgr_exception.o handle_range_map.o object_manager.o seq_vector.o seq_vector_ci.o seqdesc_ci.o tse_split_info.o tse_chunk_info.o bioseq_ci.o annot_type_index.o seq_loc_mapper.o seq_align_mapper.o annot_collector.o data_loader_factory.o mapped_feat.o seq_feat_handle.o seq_graph_handle.o seq_align_handle.o tse_assigner.o scope_transaction.o scope_transaction_impl.o edit_commands_impl.o bioseq_edit_commands.o seq_entry_edit_commands.o bioseq_set_edit_commands.o edit_saver.o unsupp_editsaver.o edits_db_engine.o edits_db_saver.o annot_finder.o gc_assembly_parser.o split_parser.o seq_id_sort.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjmgr.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxobjmgr.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxobjmgr.a
/bin/ln -f .xobjmgr.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xobjmgr.dep
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr'
/usr/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/tmp//GMfifo11637 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/test'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/test'
/usr/pkg/bin/gmake -C util -j3 --jobserver-auth=fifo:/tmp//GMfifo11637 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/unit_test/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/unit_test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/unit_test/Makefile.in
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util/unit_test/Makefile
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util TMPL=util -j3 --jobserver-auth=fifo:/tmp//GMfifo9639 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util TMPL=util -j3 --jobserver-auth=fifo:/tmp//GMfifo9639 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util TMPL=util -j3 --jobserver-auth=fifo:/tmp//GMfifo9639 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/sequence.cpp: In function 'ncbi::CRef<ncbi::objects::CSeq_loc> ncbi::objects::sequence::SourceToProduct(const ncbi::objects::CSeq_feat&, const ncbi::objects::CSeq_loc&, ncbi::objects::sequence::TS2PFlags, ncbi::objects::CScope*, int*)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/sequence.cpp:814:18: warning: catching polymorphic type 'class ncbi::objects::CObjmgrUtilException' by value [-Wcatch-value=]
814 | } catch (CObjmgrUtilException) {
| ^~~~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/sequence.cpp: In function 'ncbi::CRef<ncbi::objects::CSeq_loc> ncbi::objects::sequence::ProductToSource(const ncbi::objects::CSeq_feat&, const ncbi::objects::CSeq_loc&, ncbi::objects::sequence::TP2SFlags, ncbi::objects::CScope*)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/sequence.cpp:857:18: warning: catching polymorphic type 'class ncbi::objects::CObjmgrUtilException' by value [-Wcatch-value=]
857 | } catch (CObjmgrUtilException) {
| ^~~~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/sequence.cpp:862:18: warning: catching polymorphic type 'class ncbi::objects::CObjmgrUtilException' by value [-Wcatch-value=]
862 | } catch (CObjmgrUtilException) {
| ^~~~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/sequence.cpp: In member function 'ncbi::CRef<ncbi::objects::CSeq_loc> ncbi::objects::SRelLoc::Resolve(const ncbi::objects::CSeq_loc&, ncbi::objects::CScope*, ncbi::objects::SRelLoc::TFlags) const':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/sequence.cpp:4763:22: warning: catching polymorphic type 'class ncbi::objects::CObjmgrUtilException' by value [-Wcatch-value=]
4763 | } catch (CObjmgrUtilException) {
| ^~~~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/sequence.cpp: In instantiation of 'void ncbi::objects::x_Translate(const Container&, std::string&, int, const ncbi::objects::CGenetic_code*, bool, bool, bool, bool, bool*) [with Container = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/sequence.cpp:4104:99: required from here
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/sequence.cpp:3647:43: warning: comparison of integer expressions of different signedness: 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
3647 | const size_t usable_size = seq.size() > frame ? seq.size() - frame : 0;
| ~~~~~~~~~~~^~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/sequence.cpp: In instantiation of 'void ncbi::objects::x_Translate(const Container&, std::string&, int, const ncbi::objects::CGenetic_code*, bool, bool, bool, bool, bool*) [with Container = ncbi::objects::CSeqVector; std::string = std::__cxx11::basic_string<char>]':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/sequence.cpp:4132:99: required from here
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/sequence.cpp:3647:43: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'int' [-Wsign-compare]
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/weight.cpp: In function 'void ncbi::objects::GetProteinWeights(const ncbi::objects::CBioseq_Handle&, ncbi::objects::TWeights&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/weight.cpp:363:18: warning: catching polymorphic type 'class ncbi::objects::CObjmgrUtilException' by value [-Wcatch-value=]
363 | } catch (CObjmgrUtilException) {
| ^~~~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/indexer.cpp: In function 'int ncbi::objects::SkipMixedContent(const char*)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/indexer.cpp:3691:23: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
3691 | for (int i = 0; i < sizeof (mixedTags); i++) {
| ~~^~~~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/indexer.cpp: In member function 'void ncbi::objects::CWordPairIndexer::PopulateWordPairIndex(std::string)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/indexer.cpp:3768:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
3768 | for (int i = 0; i < str.length(); i++) {
| ~~^~~~~~~~~~~~~~
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/weight.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/sequence.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/feature.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/indexer.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seqtitle.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/create_defline.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/obj_sniff.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seq_loc_util.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seq_align_util.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seq_trimmer.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/objutil.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/feature_edit.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_source_desc.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_available_modifier.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_mod_combo.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_source_group.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_feature_clause.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_options.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/weight.cpp -o weight.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/sequence.cpp -o sequence.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/feature.cpp -o feature.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/indexer.cpp -o indexer.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seqtitle.cpp -o seqtitle.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/create_defline.cpp -o create_defline.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objm/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/create_defline.cpp: In member function 'void ncbi::objects::sequence::CDeflineGenerator::x_SetTitleFromProteinIdx(const ncbi::objects::CBioseq_Handle&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/create_defline.cpp:2230:38: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
2230 | if (offset > 0 && offset < m_MainTitle.length()) {
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/create_defline.cpp: In member function 'void ncbi::objects::sequence::CDeflineGenerator::x_SetTitleFromProtein(const ncbi::objects::CBioseq_Handle&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/create_defline.cpp:2440:38: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
2440 | if (offset > 0 && offset < m_MainTitle.length()) {
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/create_defline.cpp: In function 'size_t s_TitleEndsInOrganism(std::string&, ncbi::CTempString)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/create_defline.cpp:3090:17: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
3090 | if (pos == idx + 2) {
| ~~~~^~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/create_defline.cpp: In member function 'std::string ncbi::objects::sequence::CDeflineGenerator::GenerateDefline(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::CDeflineGenerator::TUserFlags)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/create_defline.cpp:4032:23: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
4032 | for (int i = 0; i < sizeof (s_tpaPrefixList) / sizeof (const char*); i++) {
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seq_loc_util.cpp: In function 'bool ncbi::objects::sequence::BadSeqLocSortOrder(const ncbi::objects::CBioseq_Handle&, const ncbi::objects::CSeq_loc&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seq_loc_util.cpp:612:14: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=]
612 | } catch (CException) {
| ^~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/objutil.cpp: In instantiation of 'bool ncbi::objects::{anonymous}::s_IsTagStart(const _T&, const _T&) [with _T = const char*]':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/objutil.cpp:1824:81: required from here
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/objutil.cpp:1752:57: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare]
1752 | for (int possible_str_idx = 0; possible_str_idx < num_possible_tag_starts; ++possible_str_idx) {
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/objutil.cpp:1114:13: warning: 'bool ncbi::objects::s_IsValidAccession(const string&)' defined but not used [-Wunused-function]
1114 | static bool s_IsValidAccession(const string& acc)
| ^~~~~~~~~~~~~~~~~~
gr/util/obj_sniff.cpp -o obj_sniff.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seq_loc_util.cpp -o seq_loc_util.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seq_align_util.cpp -o seq_align_util.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seq_trimmer.cpp -o seq_trimmer.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp -o bioseqgaps_ci.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/objutil.cpp -o objutil.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/feature_edit.cpp -o feature_edit.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef.cpp -o autodef.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp -o autodef_feature_clause_base.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_source_desc.cpp -o autodef_source_desc.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_available_modifier.cpp -o autodef_available_modifier.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_mod_combo.cpp -o autodef_mod_combo.o
/tmp/pkgbuild//tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_mod_combo.cpp: In member function 'bool ncbi::objects::CAutoDefModifierCombo::AddQual(bool, int, bool)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_mod_combo.cpp:1033:10: warning: unused variable 'added' [-Wunused-variable]
1033 | bool added = false, rval = false;
| ^~~~~
biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_source_group.cpp -o autodef_source_group.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_feature_clause.cpp -o autodef_feature_clause.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_options.cpp -o autodef_options.o
/bin/rm -f libxobjutil.a .libxobjutil.a.stamp
ar cr libxobjutil.a weight.o sequence.o feature.o indexer.o seqtitle.o create_defline.o obj_sniff.o seq_loc_util.o seq_align_util.o seq_trimmer.o bioseqgaps_ci.o objutil.o feature_edit.o autodef.o autodef_feature_clause_base.o autodef_source_desc.o autodef_available_modifier.o autodef_mod_combo.o autodef_source_group.o autodef_feature_clause.o autodef_options.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjutil.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxobjutil.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxobjutil.a
/bin/ln -f .xobjutil.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xobjutil.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util'
/usr/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/tmp//GMfifo9639 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util/unit_test'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util/unit_test'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util'
/usr/pkg/bin/gmake -C split -j3 --jobserver-auth=fifo:/tmp//GMfifo11637 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/split TMPL=id2_split -j3 --jobserver-auth=fifo:/tmp//GMfifo18271 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/split TMPL=id2_split -j3 --jobserver-auth=fifo:/tmp//GMfifo18271 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/split TMPL=id2_split -j3 --jobserver-auth=fifo:/tmp//GMfifo18271 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter_params.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/split_blob.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter_impl.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter_parser.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter_maker.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/id_range.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/object_splitinfo.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/asn_sizer.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/annot_piece.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/chunk_info.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/size.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/split_exceptions.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter.cpp -o blob_splitter.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter_params.cpp -o blob_splitter_params.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/split_blob.cpp -o split_blob.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter_impl.cpp -o blob_splitter_impl.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter_parser.cpp -o blob_splitter_parser.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter_maker.cpp -o blob_splitter_maker.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/id_range.cpp -o id_range.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/object_splitinfo.cpp -o object_splitinfo.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/asn_sizer.cpp -o asn_sizer.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/annot_piece.cpp -o annot_piece.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/chunk_info.cpp -o chunk_info.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/size.cpp -o size.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/split_exceptions.cpp -o split_exceptions.o
/bin/rm -f libid2_split.a .libid2_split.a.stamp
ar cr libid2_split.a blob_splitter.o blob_splitter_params.o split_blob.o blob_splitter_impl.o blob_splitter_parser.o blob_splitter_maker.o id_range.o object_splitinfo.o asn_sizer.o annot_piece.o chunk_info.o size.o split_exceptions.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2_split.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libid2_split.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libid2_split.a
/bin/ln -f .id2_split.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.id2_split.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split'
gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr'
/usr/pkg/bin/gmake -C objtools -j3 --jobserver-auth=fifo:/tmp//GMfifo22236 all_r || exit 5
gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools'
gmake[2]: warning: -j3 forced in submake: resetting jobserver mode.
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/unit_test_util/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/lds2/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/cddalignview/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/lds2/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/lds2/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/cddalignview/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/cddalignview/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/unit_test_util/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/unit_test_util/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/test/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/manip/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/validator/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/manip/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/manip/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/validator/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/validator/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/asniotest/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/test/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/align/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/snputil/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/asniotest/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/asniotest/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/snputil/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/snputil/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/align/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/align/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/uudutil/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/variation/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/writers/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/uudutil/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/uudutil/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/variation/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/variation/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/writers/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/writers/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/import/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/flatfile/Makefile.in`
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test_util/Makefile
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/import/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/import/Makefile.in
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT lds2/Makefile
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/flatfile/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/flatfile/Makefile.in
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT cddalignview/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cddalignview/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/lds2/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/unit_test_util/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT manip/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT validator/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/test/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT asniotest/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/manip/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/validator/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT align/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT snputil/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/asniotest/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT uudutil/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/snputil/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT variation/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT writers/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/uudutil/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/variation/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT import/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/writers/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT flatfile/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/flatfile/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/import/Makefile
/usr/pkg/bin/gmake -C logging -j3 --jobserver-auth=fifo:/tmp//GMfifo18755 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/logging TMPL=logging -j3 --jobserver-auth=fifo:/tmp//GMfifo3664 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/logging TMPL=logging -j3 --jobserver-auth=fifo:/tmp//GMfifo3664 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/logging TMPL=logging -j3 --jobserver-auth=fifo:/tmp//GMfifo3664 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/logging/message.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/logging/listener.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/logging/message.cpp -o message.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/logging/listener.cpp -o listener.o
/bin/rm -f libxlogging.a .libxlogging.a.stamp
ar cr libxlogging.a message.o listener.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxlogging.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxlogging.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxlogging.a
/bin/ln -f .xlogging.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xlogging.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging'
/usr/pkg/bin/gmake -C unit_test_util -j3 --jobserver-auth=fifo:/tmp//GMfifo18755 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/unit_test_util'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/unit_test_util'
/usr/pkg/bin/gmake -C readers -j3 --jobserver-auth=fifo:/tmp//GMfifo18755 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/app/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/test/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/unit_test/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/app/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/app/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/unit_test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/unit_test/Makefile.in
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT app/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/test/Makefile.in
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers/app/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers/unit_test/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers/test/Makefile
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers TMPL=xobjread -j3 --jobserver-auth=fifo:/tmp//GMfifo391 export-headers
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers TMPL=xobjreadex -j3 --jobserver-auth=fifo:/tmp//GMfifo391 export-headers
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers TMPL=xobjread -j3 --jobserver-auth=fifo:/tmp//GMfifo391 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers TMPL=xobjreadex -j3 --jobserver-auth=fifo:/tmp//GMfifo391 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers TMPL=xobjread -j3 --jobserver-auth=fifo:/tmp//GMfifo391 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_message.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_listener.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_message_handler.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/read_util.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/format_guess_ex.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/seqid_validate.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/acc_pattern.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_read.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_seq_entry.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_util.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_validate_reader.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/cigar.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_formats.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/alnread.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_errors.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_error_reporter.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_formatguess.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_util.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_reader.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_fastagap.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_clustal.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_nexus.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_phylip.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_multalign.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta_aln_builder.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta_reader_utils.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/getfeature.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/track_data.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_data.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/microarray_reader.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/phrap.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_base.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/readfeat.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/rm_reader.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/wiggle_reader.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff3_reader.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gtf_reader.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff3_location_merger.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gtf_location_merger.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff_base_columns.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff2_data.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff2_reader.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gvf_reader.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/vcf_reader.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/psl_reader.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/psl_data.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_reader.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_autosql.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_autosql_standard.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_autosql_custom.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_column_data.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/best_feat_finder.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/source_mod_parser.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta_exception.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_converter.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/ucscregion_reader.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/struct_cmt_reader.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_reader.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_error.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/descr_mod_apply.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/feature_mod_apply.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_to_enum.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/message_listener.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/line_error.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_message.cpp -o reader_message.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_listener.cpp -o reader_listener.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_message_handler.cpp -o reader_message_handler.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/read_util.cpp -o read_util.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/format_guess_ex.cpp -o format_guess_ex.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/seqid_validate.cpp -o seqid_validate.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/acc_pattern.cpp -o acc_pattern.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_read.cpp -o agp_read.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_read.cpp: In function 'ncbi::CRef<ncbi::objects::CBioseq_set> ncbi::AgpRead(ncbi::CNcbiIstream&, ncbi::EAgpRead_IdRule, bool, std::vector<std::vector<char> >*)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_read.cpp:58:74: warning: 'void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector<ncbi::CRef<ncbi::objects::CSeq_entry> >&, ncbi::EAgpRead_IdRule, bool, std::vector<std::vector<char> >*)' is deprecated [-Wdeprecated-declarations]
58 | AgpRead(is, entries, component_id_rule, set_gap_data, component_types);
| ^
In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_read.cpp:33:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/agp_read.hpp:61:6: note: declared here
61 | void AgpRead(CNcbiIstream& is,
| ^~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_read.cpp: In function 'void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector<ncbi::CRef<ncbi::objects::CSeq_entry> >&, ncbi::EAgpRead_IdRule, bool, std::vector<std::vector<char> >*)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_read.cpp:74:74: warning: 'void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector<ncbi::CRef<ncbi::objects::CBioseq> >&, ncbi::EAgpRead_IdRule, bool, std::vector<std::vector<char> >*)' is deprecated [-Wdeprecated-declarations]
74 | AgpRead(is, bioseqs, component_id_rule, set_gap_data, component_types);
| ^
In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_read.cpp:33:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/agp_read.hpp:52:6: note: declared here
52 | void AgpRead(CNcbiIstream& is,
| ^~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_util.cpp: In member function 'int ncbi::CAgpErrEx::GetCount(ncbi::CAgpErr::EErrCode) const':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_util.cpp:1706:14: warning: comparison between 'enum ncbi::CAgpErr::EErrCode' and 'enum ncbi::CAgpErrEx::<unnamed>' [-Wenum-compare]
1706 | if (code < CODE_Last) {
| ~~~~~^~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_util.cpp:1706:14: warning: comparison between types 'ncbi::CAgpErr::EErrCode' and 'ncbi::CAgpErrEx::<unnamed enum>' [-Wsign-compare]
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_validate_reader.cpp: In member function 'virtual void ncbi::CAgpValidateReader::OnObjectChange()':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_validate_reader.cpp:585:28: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=]
585 | catch(CException e){
| ^
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_formatguess.cpp: In member function 'bool ncbi::objects::CAlnFormatGuesser::xSampleIsClustal(ncbi::objects::CAlnFormatGuesser::TSample&, ncbi::objects::CPeekAheadStream&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_formatguess.cpp:137:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
137 | if (lineCount < sample.size()) {
| ~~~~~~~~~~^~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_formatguess.cpp: In member function 'bool ncbi::objects::CAlnFormatGuesser::xSampleIsFastaGap(const TSample&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_formatguess.cpp:176:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
176 | for ( ; i < sample.size(); ++i) {
| ~~^~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_formatguess.cpp:181:11: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
181 | if (i < sample.size()) {
| ~~^~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_formatguess.cpp: In member function 'bool ncbi::objects::CAlnFormatGuesser::xSampleIsSequin(const TSample&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_formatguess.cpp:234:29: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
234 | for (int index=0; index < tokens.size(); ++index) {
| ~~~~~~^~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_formatguess.cpp: In member function 'bool ncbi::objects::CAlnFormatGuesser::xSampleIsMultAlign(const TSample&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_formatguess.cpp:258:23: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
258 | if (sample.size() < lineIndex + 4) {
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_formatguess.cpp:295:22: warning: comparison of integer expressions of different signedness: 'long unsigned int' and 'int' [-Wsign-compare]
295 | return (dataSize == (endOffset - startOffset + 1));
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_seq_entry.cpp -o agp_seq_entry.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_util.cpp -o agp_util.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_validate_reader.cpp -o agp_validate_reader.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/cigar.cpp -o cigar.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta.cpp -o fasta.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_formats.cpp -o aln_formats.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/alnread.cpp -o alnread.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_errors.cpp -o aln_errors.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_error_reporter.cpp -o aln_error_reporter.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_formatguess.cpp -o aln_formatguess.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_util.cpp -o aln_util.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/Rele/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_util.cpp: In function 'void ncbi::objects::AlnUtil::CheckId(const string&, const std::vector<ncbi::objects::SLineInfo>&, int, int, bool)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_util.cpp:56:28: warning: comparison of integer expressions of different signedness: 'std::vector<ncbi::objects::SLineInfo>::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
56 | if ((orderedIds.size() > idCount) &&
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_reader.cpp: In member function 'void ncbi::CAlnReader::x_VerifyAlignmentInfo(const ncbi::objects::SAlignmentFile&, ncbi::CAlnReader::TReadFlags)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_reader.cpp:409:29: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
409 | for (int i=0; i< numDeflines; ++i) {
| ~^~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_reader.cpp: In member function 'bool ncbi::CAlnReader::x_IsGap(ncbi::CAlnReader::TNumrow, ncbi::TSeqPos, const string&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_reader.cpp:461:13: warning: comparison of integer expressions of different signedness: 'ncbi::CAlnReader::TNumrow' {aka 'int'} and 'std::vector<std::pair<unsigned int, unsigned int> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
461 | if (row > m_MiddleSections.size()) {
| ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_reader.cpp: In member function 'void ncbi::CAlnReader::x_AssignDensegIds(ncbi::CAlnReader::TFastaFlags, ncbi::objects::CDense_seg&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_reader.cpp:507:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<ncbi::objects::SLineInfo>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
507 | if (i < m_DeflineInfo.size() && !m_DeflineInfo[i].mData.empty()) {
| ~~^~~~~~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner.cpp: In member function 'virtual void ncbi::objects::CAlnScanner::xVerifyAlignmentData(const ncbi::objects::CSequenceInfo&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner.cpp:92:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<ncbi::objects::SLineInfo> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
92 | for (auto i=0; i < mSequences.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner.cpp: In member function 'bool ncbi::objects::CAlnScanner::xSeqIdIsEqualToInfoAt(const string&, int)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner.cpp:233:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<ncbi::objects::SLineInfo>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
233 | if (index >= mSeqIds.size()) {
| ~~~~~~^~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_clustal.cpp: In member function 'void ncbi::objects::CAlnScannerClustal::sProcessClustalDataLine(const std::vector<std::__cxx11::basic_string<char> >&, int, int, int, bool, int&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_clustal.cpp:296:27: warning: comparison of integer expressions of different signedness: 'long unsigned int' and 'int' [-Wsign-compare]
296 | if (currentLineLength != blockLineLength) {
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_phylip.cpp: In member function 'virtual void ncbi::objects::CAlnScannerPhylip::xImportAlignmentData(ncbi::objects::CSequenceInfo&, ncbi::objects::CLineInput&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_phylip.cpp:129:27: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
129 | if (dataLineCount < mSequenceCount) { // in first block
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_phylip.cpp: In member function 'virtual void ncbi::objects::CAlnScannerPhylip::xVerifyAlignmentData(const ncbi::objects::CSequenceInfo&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_phylip.cpp:210:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<ncbi::objects::SLineInfo>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
210 | if (mSequenceCount != mSeqIds.size()) {
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp: In member function 'virtual void ncbi::objects::CAlnScannerSequin::xImportAlignmentData(ncbi::objects::CSequenceInfo&, ncbi::objects::CLineInput&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp:75:33: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<ncbi::objects::SLineInfo>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
75 | if (lineInBlock != mSeqIds.size()) {
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp:156:29: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<ncbi::objects::SLineInfo>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
156 | if (lineInBlock >= mSeqIds.size()) {
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp:186:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
186 | for (auto i = 0; i < seqData.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp: In static member function 'static bool ncbi::objects::CAlnScannerSequin::xExtractSequinSequenceData(const string&, std::string&, std::string&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp:259:42: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
259 | for (auto curBlock = 3; curBlock < tokens.size() - 1; ++curBlock) {
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp:264:42: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
264 | for (auto curBlock = 1; curBlock < tokens.size(); ++curBlock) {
| ~~~~~~~~~^~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_multalign.cpp: In member function 'virtual void ncbi::objects::CAlnScannerMultAlign::xImportAlignmentData(ncbi::objects::CSequenceInfo&, ncbi::objects::CLineInput&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_multalign.cpp:125:37: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
125 | if (lineInBlock != expectedNumSequences) {
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_multalign.cpp:135:48: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
135 | if (!inFirstBlock && lineInBlock == expectedNumSequences) {
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
aseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_reader.cpp -o aln_reader.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner.cpp -o aln_scanner.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_fastagap.cpp -o aln_scanner_fastagap.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_clustal.cpp -o aln_scanner_clustal.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_nexus.cpp -o aln_scanner_nexus.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_phylip.cpp -o aln_scanner_phylip.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp -o aln_scanner_sequin.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_multalign.cpp -o aln_scanner_multalign.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta_aln_builder.cpp -o fasta_aln_builder.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta_reader_utils.cpp -o fasta_reader_utils.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/getfeature.cpp -o getfeature.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+//tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/readfeat.cpp: In member function 'bool ncbi::objects::CFeatureTableReader_Imp::x_AddQualifierToCdregion(ncbi::CRef<ncbi::objects::CSeq_feat>, ncbi::objects::CSeqFeatData&, ncbi::objects::CFeatureTableReader_Imp::EQual, const string&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/readfeat.cpp:1407:22: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=]
1407 | } catch( CStringException ) {
| ^~~~~~~~~~~~~~~~
work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/track_data.cpp -o track_data.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_data.cpp -o reader_data.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/microarray_reader.cpp -o microarray_reader.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/phrap.cpp -o phrap.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_base.cpp -o reader_base.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/readfeat.cpp -o readfeat.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/rm_reader.cpp -o rm_reader.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/wiggle_reader.cpp -o wiggle_reader.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff3_reader.cpp -o gff3_reader.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gtf_reader.cpp -o gtf_reader.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff3_location_merger.cpp -o gff3_location_merger.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuil/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff2_reader.cpp: In member function 'bool ncbi::objects::CGff2Reader::xGetStartsOnPlusStrand(ncbi::TSeqPos, const std::vector<std::__cxx11::basic_string<char> >&, bool, std::vector<int>&) const':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff2_reader.cpp:832:21: warning: comparison of integer expressions of different signedness: 'int' and 'const long unsigned int' [-Wsign-compare]
832 | for (auto i=0; i<gapCount; ++i) {
| ~^~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff2_reader.cpp: In member function 'bool ncbi::objects::CGff2Reader::xSetDensegStarts(const std::vector<std::__cxx11::basic_string<char> >&, ncbi::objects::ENa_strand, ncbi::objects::ENa_strand, ncbi::TSeqPos, ncbi::TSeqPos, const ncbi::objects::CGff2Record&, ncbi::objects::CSeq_align_Base::C_Segs::TDenseg&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff2_reader.cpp:921:21: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare]
921 | for (auto i=0; i<gapCount; ++i) {
| ~^~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff2_reader.cpp: In member function 'bool ncbi::objects::CGff2Reader::xAlignmentSetSpliced_seg(const ncbi::objects::CGff2Record&, ncbi::CRef<ncbi::objects::CSeq_align>)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff2_reader.cpp:1006:21: warning: comparison of integer expressions of different signedness: 'int' and 'const long unsigned int' [-Wsign-compare]
1006 | for (auto i=0; i<gapCount; ++i) {
| ~^~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/vcf_reader.cpp: In member function 'virtual void ncbi::objects::CVcfReader::xSetFileFormat(const string&, ncbi::objects::CSeq_annot&, bool&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/vcf_reader.cpp:332:27: warning: catching polymorphic type 'class std::exception' by value [-Wcatch-value=]
332 | catch (std::exception except) {
| ^~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/psl_data.cpp: In member function 'void ncbi::objects::CPslData::Initialize(const TReaderLine&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/psl_data.cpp:144:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
144 | if (mBlockCount != mBlockSizes.size()) {
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/psl_data.cpp:150:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
150 | if (mBlockCount != mBlockStartsQ.size()) {
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/psl_data.cpp:156:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
156 | if (mBlockCount != mBlockStartsT.size()) {
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_reader.cpp: In member function 'virtual bool ncbi::objects::CBedReader::xDetermineLikelyColumnCount(ncbi::objects::CLinePreBuffer&, ncbi::objects::ILineErrorListener*)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_reader.cpp:484:35: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
484 | if (blockSizes.size() != blockCount) {
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_reader.cpp:505:36: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
505 | if (blockStarts.size() != blockCount) {
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
d/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gtf_location_merger.cpp -o gtf_location_merger.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff_base_columns.cpp -o gff_base_columns.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff2_data.cpp -o gff2_data.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff2_reader.cpp -o gff2_reader.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gvf_reader.cpp -o gvf_reader.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/vcf_reader.cpp -o vcf_reader.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/psl_reader.cpp -o psl_reader.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/psl_data.cpp -o psl_data.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_reader.cpp -o bed_reader.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_autosql.cpp -o bed_autosql.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_autosql_standard.cpp -o bed_autosql_standard.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/source_mod_parser.cpp: In function 'void ncbi::objects::s_GetPrimerInfo(const ncbi::objects::CSourceModParser::SMod*, const ncbi::objects::CSourceModParser::SMod*, std::vector<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> > >&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/source_mod_parser.cpp:877:20: warning: comparison of integer expressions of different signedness: 'int' and 'const long unsigned int' [-Wsign-compare]
877 | for (int i=0; i<num_reactions; ++i) {
| ~^~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/source_mod_parser.cpp:878:31: warning: comparison of integer expressions of different signedness: 'int' and 'const long unsigned int' [-Wsign-compare]
878 | const string name = (i<num_names) ? names[i] : "";
| ~^~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/source_mod_parser.cpp:879:31: warning: comparison of integer expressions of different signedness: 'int' and 'const long unsigned int' [-Wsign-compare]
879 | const string seq = (i<num_seqs) ? seqs[i] : "";
| ~^~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/source_mod_parser.cpp: In member function 'void ncbi::objects::CSourceModParser::x_AddPCRPrimers(ncbi::CAutoInitRef<ncbi::objects::CPCRReactionSet>&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/source_mod_parser.cpp:912:25: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
912 | for (auto i=0; i<num_fwd_primer_info; ++i) {
| ~^~~~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/source_mod_parser.cpp:922:24: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
922 | for (int i=0; i<diff; ++i) {
| ~^~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/source_mod_parser.cpp:928:27: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
928 | for (int i=diff; i<num_fwd_primer_info; ++i) {
| ~^~~~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/source_mod_parser.cpp:937:24: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
937 | for (int i=0; i<num_fwd_primer_info; ++i) {
| ~^~~~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/source_mod_parser.cpp:944:42: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
944 | for (int i=num_fwd_primer_info; i<num_rev_primer_info; ++i) {
| ~^~~~~~~~~~~~~~~~~~~~
.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_autosql_custom.cpp -o bed_autosql_custom.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_column_data.cpp -o bed_column_data.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/best_feat_finder.cpp -o best_feat_finder.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/source_mod_parser.cpp -o source_mod_parser.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta_exception.cpp -o fasta_exception.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_converter.cpp -o agp_converter.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/ucscregion_reader.cpp -o ucscregion_reader.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/struct_cmt_reader.cpp -o struct_cmt_reader.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_reader.cpp -o mod_reader.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_error.cpp -o mod_error.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/descr_mod_apply.cpp -o descr_mod_apply.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/feature_mod_apply.cpp -o feature_mod_apply.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_to_enum.cpp -o mod_to_enum.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/message_listener.cpp -o message_listener.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/line_error.cpp -o line_error.o
/bin/rm -f libxobjread.a .libxobjread.a.stamp
ar cr libxobjread.a reader_message.o reader_listener.o reader_message_handler.o read_util.o format_guess_ex.o seqid_validate.o acc_pattern.o agp_read.o agp_seq_entry.o agp_util.o agp_validate_reader.o cigar.o fasta.o aln_formats.o alnread.o aln_errors.o aln_error_reporter.o aln_formatguess.o aln_util.o aln_reader.o aln_scanner.o aln_scanner_fastagap.o aln_scanner_clustal.o aln_scanner_nexus.o aln_scanner_phylip.o aln_scanner_sequin.o aln_scanner_multalign.o fasta_aln_builder.o fasta_reader_utils.o getfeature.o track_data.o reader_data.o microarray_reader.o phrap.o reader_base.o readfeat.o rm_reader.o wiggle_reader.o gff3_reader.o gtf_reader.o gff3_location_merger.o gtf_location_merger.o gff_base_columns.o gff2_data.o gff2_reader.o gvf_reader.o vcf_reader.o psl_reader.o psl_data.o bed_reader.o bed_autosql.o bed_autosql_standard.o bed_autosql_custom.o bed_column_data.o best_feat_finder.o source_mod_parser.o fasta_exception.o agp_converter.o ucscregion_reader.o struct_cmt_reader.o mod_reader.o mod_error.o descr_mod_apply.o feature_mod_apply.o mod_to_enum.o message_listener.o line_error.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjread.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxobjread.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxobjread.a
/bin/ln -f .xobjread.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xobjread.dep
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers TMPL=xobjreadex -j3 --jobserver-auth=fifo:/tmp//GMfifo391 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/glimmer_reader.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper_builtin.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper_config.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper_database.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper_gcassembly.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper_scope.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/source_mod_parser_wrapper.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/glimmer_reader.cpp -o glimmer_reader.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper.cpp -o idmapper.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper_builtin.cpp -o idmapper_builtin.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper_config.cpp -o idmapper_config.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper_database.cpp -o idmapper_database.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper_gcassembly.cpp -o idmapper_gcassembly.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper_scope.cpp -o idmapper_scope.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/source_mod_parser_wrapper.cpp -o source_mod_parser_wrapper.o
/bin/rm -f libxobjreadex.a .libxobjreadex.a.stamp
ar cr libxobjreadex.a glimmer_reader.o idmapper.o idmapper_builtin.o idmapper_config.o idmapper_database.o idmapper_gcassembly.o idmapper_scope.o source_mod_parser_wrapper.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjreadex.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxobjreadex.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxobjreadex.a
/bin/ln -f .xobjreadex.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xobjreadex.dep
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers'
/usr/pkg/bin/gmake -C app -j3 --jobserver-auth=fifo:/tmp//GMfifo5804 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers/app'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers/app'
/usr/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/tmp//GMfifo5804 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers/test'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers/test'
/usr/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/tmp//GMfifo5804 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers/unit_test'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers/unit_test'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers'
/usr/pkg/bin/gmake -C blast -j3 --jobserver-auth=fifo:/tmp//GMfifo18755 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_writer/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_writer/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_writer/Makefile.in
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT gene_info_writer/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_writer/Makefile
/usr/pkg/bin/gmake -C seqdb_reader -j3 --jobserver-auth=fifo:/tmp//GMfifo21455 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader TMPL=seqdb -j3 --jobserver-auth=fifo:/tmp//GMfifo24381 export-headers
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader TMPL=seqdb -j3 --jobserver-auth=fifo:/tmp//GMfifo24381 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader TMPL=seqdb -j3 --jobserver-auth=fifo:/tmp//GMfifo24381 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp: In static member function 'static char* ncbi::CSeqDBAtlas::Alloc(size_t, bool)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp:256:16: warning: catching polymorphic type 'class std::bad_alloc' by value [-Wcatch-value=]
256 | catch(std::bad_alloc) {
| ^~~~~~~~~
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdb.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdblmdbset.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqidlist_reader.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdb.cpp -o seqdb.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp -o seqdbbitset.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp -o seqdbfilter.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp -o seqdbatlas.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp -o seqdbalias.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp -o seqdbcomm/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp: In function 'void ncbi::SeqDB_ReadMemoryTaxIdList(const char*, const char*, ncbi::CSeqDBGiList::STaxIdsOids&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:1094:52: warning: comparison of integer expressions of different signedness: 'Int4' {aka 'int'} and 'unsigned int' [-Wsign-compare]
1094 | if (((bendp - bbeginp) < 2) || (bbeginp[0] != 0xFFFFFFFF)
| ~~~~~~~~~~~^~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp: In member function 'int ncbi::CSeqDBVol::GetAmbigPartialSeq(int, char**, int, ncbi::ESeqDBAllocType, ncbi::CSeqDB::TSequenceRanges*, ncbi::CSeqDB::TSequenceRanges*) const':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:1542:50: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'int' [-Wsign-compare]
1542 | if ((*partial_ranges)[num_ranges - 1].second > base_length) {
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp: In member function 'void ncbi::CSeqDBVol::GetRawSeqAndAmbig(int, const char**, int*, int*) const':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:2998:11: warning: variable 'map_end' set but not used [-Wunused-but-set-variable]
2998 | TIndx map_end = 0;
| ^~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp: In member function 'ncbi::CSeqDBIsam::EErrorCode ncbi::CSeqDBIsam::x_StringSearch(const string&, std::vector<std::__cxx11::basic_string<char> >&, std::vector<std::__cxx11::basic_string<char> >&, std::vector<long int>&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:972:9: warning: variable 'found_short' set but not used [-Wunused-but-set-variable]
972 | int found_short(-1);
| ^~~~~~~~~~~
on.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp -o seqdbfile.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp -o seqdbimpl.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp -o seqdbvol.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp -o seqdbvolset.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp -o seqdboidlist.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp -o seqdbisam.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp -o seqdbtax.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp -o seqdbgilistset.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp -o seqdbexpert.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp -o seqdbblob.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/in/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp: In member function 'void ncbi::CSeqDBLMDB::GetOidsForTaxIds(const std::set<int>&, std::vector<int>&, std::vector<int>&) const':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp:642:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<bool>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
642 | for (int i=0; i < oids_set.size(); i++) {
| ~~^~~~~~~~~~~~~~~~~
c -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp -o seqdbcol.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp -o seqdbgimask.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp -o seqdbobj.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp -o seqdb_lmdb.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdblmdbset.cpp -o seqdblmdbset.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqidlist_reader.cpp -o seqidlist_reader.o
/bin/rm -f libseqdb.a .libseqdb.a.stamp
ar cr libseqdb.a seqdb.o seqdbbitset.o seqdbfilter.o seqdbatlas.o seqdbalias.o seqdbcommon.o seqdbfile.o seqdbimpl.o seqdbvol.o seqdbvolset.o seqdboidlist.o seqdbisam.o seqdbtax.o seqdbgilistset.o seqdbexpert.o seqdbblob.o seqdbcol.o seqdbgimask.o seqdbobj.o seqdb_lmdb.o seqdblmdbset.o seqidlist_reader.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqdb.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libseqdb.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libseqdb.a
/bin/ln -f .seqdb.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.seqdb.dep
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader'
/usr/pkg/bin/gmake -C demo -j3 --jobserver-auth=fifo:/tmp//GMfifo24381 all_r || exit 5
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/demo TMPL=seqdb_demo -j3 --jobserver-auth=fifo:/tmp//GMfifo14912 flag-stamps
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo'
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/demo TMPL=seqdb_demo -j3 --jobserver-auth=fifo:/tmp//GMfifo14912 all
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=seqdb_demo -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp -o seqdb_demo.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 seqdb_demo.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lseqdb-static -lxobjutil-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -lpthread -o seqdb_demo
strip seqdb_demo
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_demo /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin
/bin/ln -f seqdb_demo /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/seqdb_demo
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo'
/usr/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/tmp//GMfifo24381 all_r || exit 5
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/test TMPL=seqdb_perf -j3 --jobserver-auth=fifo:/tmp//GMfifo24356 flag-stamps
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test'
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/test TMPL=seqdb_perf -j3 --jobserver-auth=fifo:/tmp//GMfifo24356 all
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp: In member function 'void CSeqDBPerfApp::x_UpdateMemoryUsage(int)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:114:59: warning: 'bool ncbi::GetMemoryUsage(size_t*, size_t*, size_t*)' is deprecated [-Wdeprecated-declarations]
114 | if (GetMemoryUsage(&mu.total, &mu.resident, &mu.shared)) {
| ^
In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:36:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbi_system.hpp:511:13: note: declared here
511 | extern bool GetMemoryUsage(size_t* total, size_t* resident, size_t* shared);
| ^~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp: In member function 'int CSeqDBPerfApp::x_ScanDatabase()':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:154:31: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
154 | for (ssize_t i = 0; i < oids2iterate.size(); i++) {
| ~~^~~~~~~~~~~~~~~~~~~~~
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=seqdb_perf -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp -o seqdb_perf.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 seqdb_perf.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lseqdb-static -lxobjutil-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -llzo2 -lzstd -lz -lresolv -llmdb -lpthread -lm -lpthread -o seqdb_perf
strip seqdb_perf
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_perf /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin
/bin/ln -f seqdb_perf /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/seqdb_perf
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader'
/usr/pkg/bin/gmake -C seqdb_writer -j3 --jobserver-auth=fifo:/tmp//GMfifo21455 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer TMPL=writedb -j3 --jobserver-auth=fifo:/tmp//GMfifo24092 export-headers
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer TMPL=writedb -j3 --jobserver-auth=fifo:/tmp//GMfifo24092 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer TMPL=writedb -j3 --jobserver-auth=fifo:/tmp//GMfifo24092 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/criteria.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/seqidlist_writer.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb.cpp -o writedb.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp -o writedb_impl.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp -o writedb_volume.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp -o writedb_files.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp -o writedb_isam.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp -o writedb_gimask.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp -o writedb_convert.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp: In member function 'void ncbi::CWriteDB_LMDB::x_CommitTransaction()':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp:295:42: warning: 'unsigned int ncbi::GetCpuCount()' is deprecated [-Wdeprecated-declarations]
295 | unsigned int num_threads = GetCpuCount();
| ^
In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbifile.hpp:53,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp:35:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbi_system.hpp:479:14: note: declared here
479 | unsigned int GetCpuCount(void)
| ^~~~~~~~~~~
Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp -o writedb_general.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp -o writedb_column.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp -o mask_info_registry.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp -o taxid_set.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp -o build_db.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp -o multisource_util.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/criteria.cpp -o criteria.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp -o writedb_lmdb.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/seqidlist_writer.cpp -o seqidlist_writer.o
/bin/rm -f libwritedb.a .libwritedb.a.stamp
ar cr libwritedb.a writedb.o writedb_impl.o writedb_volume.o writedb_files.o writedb_isam.o writedb_gimask.o writedb_convert.o writedb_general.o writedb_column.o mask_info_registry.o taxid_set.o build_db.o multisource_util.o criteria.o writedb_lmdb.o seqidlist_writer.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libwritedb.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libwritedb.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libwritedb.a
/bin/ln -f .writedb.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.writedb.dep
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer'
/usr/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/tmp//GMfifo24092 all_r || exit 5
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
NOTE: Skipping project unit_test due to unmet requirements:
Boost.Test.Included
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Nothing to be done for 'mark-as-disabled_r'.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer'
/usr/pkg/bin/gmake -C gene_info_reader -j3 --jobserver-auth=fifo:/tmp//GMfifo21455 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -j3 --jobserver-auth=fifo:/tmp//GMfifo22156 export-headers
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -j3 --jobserver-auth=fifo:/tmp//GMfifo22156 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -j3 --jobserver-auth=fifo:/tmp//GMfifo22156 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/gene_info.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/file_utils.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/gene_info.cpp -o gene_info.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp -o gene_info_reader.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/file_utils.cpp -o file_utils.o
/bin/rm -f libgene_info.a .libgene_info.a.stamp
ar cr libgene_info.a gene_info.o gene_info_reader.o file_utils.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgene_info.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libgene_info.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgene_info.a
/bin/ln -f .gene_info.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.gene_info.dep
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader'
/usr/pkg/bin/gmake -C demo -j3 --jobserver-auth=fifo:/tmp//GMfifo22156 all_r || exit 5
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/demo TMPL=gene_info_reader -j3 --jobserver-auth=fifo:/tmp//GMfifo20139 flag-stamps
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo'
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/demo TMPL=gene_info_reader -j3 --jobserver-auth=fifo:/tmp//GMfifo20139 all
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=gene_info_reader -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp -o gene_info_reader_app.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 gene_info_reader_app.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lgene_info-static -lxobjutil-static -lseqdb-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -llzo2 -lzstd -lz -lresolv -llmdb -lpthread -lm -lpthread -o gene_info_reader
strip gene_info_reader
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f gene_info_reader /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin
/bin/ln -f gene_info_reader /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/gene_info_reader
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo'
/usr/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/tmp//GMfifo22156 all_r || exit 5
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
NOTE: Skipping project unit_test due to unmet requirements:
Boost.Test.Included
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Nothing to be done for 'mark-as-disabled_r'.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader'
/usr/pkg/bin/gmake -C gene_info_writer -j3 --jobserver-auth=fifo:/tmp//GMfifo21455 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_writer'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_writer'
/usr/pkg/bin/gmake -C services -j3 --jobserver-auth=fifo:/tmp//GMfifo21455 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/services TMPL=blast_services -j3 --jobserver-auth=fifo:/tmp//GMfifo21030 export-headers
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/services TMPL=blast_services -j3 --jobserver-auth=fifo:/tmp//GMfifo21030 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/services TMPL=blast_services -j3 --jobserver-auth=fifo:/tmp//GMfifo21030 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/services/blast_services.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/services/blast_services.cpp -o blast_services.o
/bin/rm -f libblast_services.a .libblast_services.a.stamp
ar cr libblast_services.a blast_services.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_services.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libblast_services.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libblast_services.a
/bin/ln -f .blast_services.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.blast_services.dep
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services'
/usr/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/tmp//GMfifo21030 all_r || exit 5
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
NOTE: Skipping project unit_test due to unmet requirements:
Boost.Test.Included
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Nothing to be done for 'mark-as-disabled_r'.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services'
/usr/pkg/bin/gmake -C blastdb_format -j3 --jobserver-auth=fifo:/tmp//GMfifo21455 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -j3 --jobserver-auth=fifo:/tmp//GMfifo6540 export-headers
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -j3 --jobserver-auth=fifo:/tmp//GMfifo6540 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -j3 --jobserver-auth=fifo:/tmp//GMfifo6540 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:69: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations]
85 | CSeqFormatterConfig config = CSeqFormatterConfig());
| ^
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here
43 | struct NCBI_DEPRECATED CSeqFormatterConfig {
| ^~~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:96:85: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations]
96 | void DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config = CSeqFormatterConfig());
| ^
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here
43 | struct NCBI_DEPRECATED CSeqFormatterConfig {
| ^~~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:68: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations]
85 | CSeqFormatterConfig config = CSeqFormatterConfig());
| ^
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here
43 | struct NCBI_DEPRECATED CSeqFormatterConfig {
| ^~~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:96:84: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations]
96 | void DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config = CSeqFormatterConfig());
| ^
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here
43 | struct NCBI_DEPRECATED CSeqFormatterConfig {
| ^~~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:49:74: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations]
49 | CSeqFormatterConfig config /* = CSeqFormatterConfig() */)
| ^
In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here
43 | struct NCBI_DEPRECATED CSeqFormatterConfig {
| ^~~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:270:72: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations]
270 | void CSeqFormatter::DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config)
| ^
In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here
43 | struct NCBI_DEPRECATED CSeqFormatterConfig {
| ^~~~~~~~~~~~~~~~~~~
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp -o seq_writer.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp -o blastdb_dataextract.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp -o blastdb_formatter.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp -o seq_formatter.o
/bin/rm -f libblastdb_format.a .libblastdb_format.a.stamp
ar cr libblastdb_format.a seq_writer.o blastdb_dataextract.o blastdb_formatter.o seq_formatter.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb_format.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libblastdb_format.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libblastdb_format.a
/bin/ln -f .blastdb_format.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.blastdb_format.dep
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format'
/usr/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/tmp//GMfifo6540 all_r || exit 5
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
NOTE: Skipping project unit_test due to unmet requirements:
Boost.Test.Included
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Nothing to be done for 'mark-as-disabled_r'.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast'
/usr/pkg/bin/gmake -C lds2 -j3 --jobserver-auth=fifo:/tmp//GMfifo18755 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/lds2'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/lds2'
/usr/pkg/bin/gmake -C pubseq_gateway -j3 --jobserver-auth=fifo:/tmp//GMfifo18755 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/cassandra/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/protobuf/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/cache/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/cassandra/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/cassandra/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/protobuf/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/protobuf/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/cache/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/cache/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/ipg/Makefile.in`
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT cassandra/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT protobuf/Makefile
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/ipg/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/ipg/Makefile.in
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT cache/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cassandra/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/protobuf/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT ipg/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cache/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/ipg/Makefile
/usr/pkg/bin/gmake -C cassandra -j3 --jobserver-auth=fifo:/tmp//GMfifo23276 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cassandra'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cassandra'
/usr/pkg/bin/gmake -C client -j3 --jobserver-auth=fifo:/tmp//GMfifo23276 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/client TMPL=psg_client -j3 --jobserver-auth=fifo:/tmp//GMfifo6276 export-headers
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/client TMPL=psg_client -j3 --jobserver-auth=fifo:/tmp//GMfifo6276 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/client TMPL=psg_client -j3 --jobserver-auth=fifo:/tmp//GMfifo6276 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp -o psg_client.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp -o psg_client_transport.o
/bin/rm -f libpsg_client.a .libpsg_client.a.stamp
ar cr libpsg_client.a psg_client.o psg_client_transport.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpsg_client.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libpsg_client.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libpsg_client.a
/bin/ln -f .psg_client.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.psg_client.dep
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client'
/usr/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/tmp//GMfifo6276 all_r || exit 5
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: *** No rule to make target '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test'
NOTE: skipping project "test_psg_client_impl" due to unmet requirements
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: *** No rule to make target '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test'
NOTE: skipping project "test_psg_client_impl" due to unmet requirements
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client'
/usr/pkg/bin/gmake -C protobuf -j3 --jobserver-auth=fifo:/tmp//GMfifo23276 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/protobuf'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/protobuf'
/usr/pkg/bin/gmake -C cache -j3 --jobserver-auth=fifo:/tmp//GMfifo23276 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cache'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cache'
/usr/pkg/bin/gmake -C ipg -j3 --jobserver-auth=fifo:/tmp//GMfifo23276 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/ipg'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/ipg'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway'
/usr/pkg/bin/gmake -C data_loaders -j3 --jobserver-auth=fifo:/tmp//GMfifo18755 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/lds2/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/patcher/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/asn_cache/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/lds2/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/lds2/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/cdd/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/patcher/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/patcher/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/asn_cache/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/asn_cache/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/cdd/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/cdd/Makefile.in
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT lds2/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT patcher/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT asn_cache/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/lds2/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/asn_cache/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/patcher/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT cdd/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/cdd/Makefile
/usr/pkg/bin/gmake -C genbank -j3 --jobserver-auth=fifo:/tmp//GMfifo8633 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/pubseq/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/pubseq2/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/pubseq/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/pubseq/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/pubseq2/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/pubseq2/Makefile.in
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT pubseq/Makefile
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT pubseq2/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq2/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/test/Makefile
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -j3 --jobserver-auth=fifo:/tmp//GMfifo7427 export-headers
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank'
gmake[6]: Nothing to be done for 'export-headers'.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -j3 --jobserver-auth=fifo:/tmp//GMfifo7427 export-headers
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank'
gmake[6]: Nothing to be done for 'export-headers'.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -j3 --jobserver-auth=fifo:/tmp//GMfifo7427 flag-stamps
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank'
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -j3 --jobserver-auth=fifo:/tmp//GMfifo7427 flag-stamps
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank'
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -j3 --jobserver-auth=fifo:/tmp//GMfifo7427 all
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp: In function 'std::string ncbi::objects::{anonymous}::sx_ErrorSeqIds(ncbi::objects::CReaderRequestResult&, const std::vector<ncbi::objects::CBlob_id>&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp:1144:37: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare]
1144 | if (++total > kMaxErrorSeqIds) continue;
| ~~~~~~~~^~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp:1151:23: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare]
1151 | if (total > kMaxErrorSeqIds) {
| ~~~~~~^~~~~~~~~~~~~~~~~
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/writer.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/processors.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/wgsmaster.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader_snp.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/seqref.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/blob_id.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/request_result.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader_service.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/incr_time.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp -o dispatcher.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader.cpp -o reader.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/writer.cpp -o writer.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/processors.cpp -o processors.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/wgsmaster.cpp -o wgsmaster.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader_snp.cpp -o reader_snp.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/seqref.cpp -o seqref.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbu/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/blob_id.cpp: In constructor 'ncbi::objects::CBlob_id::CBlob_id(ncbi::CTempString)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/blob_id.cpp:51:12: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=]
51 | catch (CStringException) {
| ^~~~~~~~~~~~~~~~
ild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/blob_id.cpp -o blob_id.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/request_result.cpp -o request_result.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp -o reader_id1_base.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp -o reader_id2_base.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader_service.cpp -o reader_service.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/incr_time.cpp -o incr_time.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp -o info_cache.o
/bin/rm -f libncbi_xreader.a .libncbi_xreader.a.stamp
/bin/rm -f libncbi_xreader-dll.so .libncbi_xreader-dll.so.stamp
ar cr libncbi_xreader.a dispatcher.o reader.o writer.o processors.o wgsmaster.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -shared -o libncbi_xreader-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 -fPIC dispatcher.o reader.o writer.o processors.o wgsmaster.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxcompress -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -lpthread
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libncbi_xreader.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.a
/bin/ln -f .ncbi_xreader.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader.dep
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libncbi_xreader-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader-dll.so
/bin/ln -f .ncbi_xreader-dll.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader-dll.dep
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -j3 --jobserver-auth=fifo:/tmp//GMfifo7427 all
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gbnative.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gbload_util.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/psg_loader.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp -o gbloader.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gbnative.cpp -o gbnative.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gbload_util.cpp -o gbload_util.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/psg_loader.cpp -o psg_loader.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp -o psg_loader_impl.o
/bin/rm -f libncbi_xloader_genbank.a .libncbi_xloader_genbank.a.stamp
/bin/rm -f libncbi_xloader_genbank-dll.so .libncbi_xloader_genbank-dll.so.stamp
ar cr libncbi_xloader_genbank.a gbloader.o gbnative.o gbload_util.o psg_loader.o psg_loader_impl.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -shared -o libncbi_xloader_genbank-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 -fPIC gbloader.o gbnative.o gbload_util.o psg_loader.o psg_loader_impl.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lgeneral -lncbi_xreader-dll -lz -lbz2 -llzo2 -lzstd -lm -lpthread
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libncbi_xloader_genbank.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.a
/bin/ln -f .ncbi_xloader_genbank.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xloader_genbank.dep
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libncbi_xloader_genbank-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank-dll.so
/bin/ln -f .ncbi_xloader_genbank-dll.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xloader_genbank-dll.dep
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank'
/usr/pkg/bin/gmake -C cache -j3 --jobserver-auth=fifo:/tmp//GMfifo2355 all_r || exit 5
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -j3 --jobserver-auth=fifo:/tmp//GMfifo3751 export-headers
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache'
gmake[6]: Nothing to be done for 'export-headers'.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -j3 --jobserver-auth=fifo:/tmp//GMfifo3751 flag-stamps
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache'
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -j3 --jobserver-auth=fifo:/tmp//GMfifo3751 all
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp -o reader_cache.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp -o writer_cache.o
/bin/rm -f libncbi_xreader_cache.a .libncbi_xreader_cache.a.stamp
/bin/rm -f libncbi_xreader_cache-dll.so .libncbi_xreader_cache-dll.so.stamp
ar cr libncbi_xreader_cache.a reader_cache.o writer_cache.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -shared -o libncbi_xreader_cache-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 -fPIC reader_cache.o writer_cache.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -lm -lpthread
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libncbi_xreader_cache.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_cache.a
/bin/ln -f .ncbi_xreader_cache.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader_cache.dep
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libncbi_xreader_cache-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_cache-dll.so
/bin/ln -f .ncbi_xreader_cache-dll.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader_cache-dll.dep
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache'
/usr/pkg/bin/gmake -C pubseq -j3 --jobserver-auth=fifo:/tmp//GMfifo2355 all_r || exit 5
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq'
/usr/pkg/bin/gmake -C id2 -j3 --jobserver-auth=fifo:/tmp//GMfifo2355 all_r || exit 5
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -j3 --jobserver-auth=fifo:/tmp//GMfifo25142 export-headers
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2'
gmake[6]: Nothing to be done for 'export-headers'.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -j3 --jobserver-auth=fifo:/tmp//GMfifo25142 flag-stamps
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2'
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -j3 --jobserver-auth=fifo:/tmp//GMfifo25142 all
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp -o reader_id2.o
/bin/rm -f libncbi_xreader_id2.a .libncbi_xreader_id2.a.stamp
/bin/rm -f libncbi_xreader_id2-dll.so .libncbi_xreader_id2-dll.so.stamp
ar cr libncbi_xreader_id2.a reader_id2.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -shared -o libncbi_xreader_id2-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 -fPIC reader_id2.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lm -lpthread
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libncbi_xreader_id2.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id2.a
/bin/ln -f .ncbi_xreader_id2.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader_id2.dep
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libncbi_xreader_id2-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id2-dll.so
/bin/ln -f .ncbi_xreader_id2-dll.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader_id2-dll.dep
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2'
/usr/pkg/bin/gmake -C id1 -j3 --jobserver-auth=fifo:/tmp//GMfifo2355 all_r || exit 5
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -j3 --jobserver-auth=fifo:/tmp//GMfifo28593 export-headers
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1'
gmake[6]: Nothing to be done for 'export-headers'.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -j3 --jobserver-auth=fifo:/tmp//GMfifo28593 flag-stamps
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1'
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -j3 --jobserver-auth=fifo:/tmp//GMfifo28593 all
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp -o reader_id1.o
/bin/rm -f libncbi_xreader_id1.a .libncbi_xreader_id1.a.stamp
/bin/rm -f libncbi_xreader_id1-dll.so .libncbi_xreader_id1-dll.so.stamp
ar cr libncbi_xreader_id1.a reader_id1.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -shared -o libncbi_xreader_id1-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 -fPIC reader_id1.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxcompress -lm -lpthread
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libncbi_xreader_id1.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.a
/bin/ln -f .ncbi_xreader_id1.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader_id1.dep
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libncbi_xreader_id1-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1-dll.so
/bin/ln -f .ncbi_xreader_id1-dll.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader_id1-dll.dep
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1'
/usr/pkg/bin/gmake -C pubseq2 -j3 --jobserver-auth=fifo:/tmp//GMfifo2355 all_r || exit 5
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq2'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq2'
/usr/pkg/bin/gmake -C gicache -j3 --jobserver-auth=fifo:/tmp//GMfifo2355 all_r || exit 5
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache TMPL=ncbi_xreader_gicache -j3 --jobserver-auth=fifo:/tmp//GMfifo9731 export-headers
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache'
gmake[6]: Nothing to be done for 'export-headers'.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache TMPL=ncbi_xreader_gicache -j3 --jobserver-auth=fifo:/tmp//GMfifo9731 flag-stamps
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache'
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache TMPL=ncbi_xreader_gicache -j3 --jobserver-auth=fifo:/tmp//GMfifo9731 all
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c: In function 'x_DataToGiData':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:289:7: warning: unused variable 'logmsg' [-Wunused-variable]
289 | char logmsg[256];
| ^~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c: In function 'GICache_LoadAdd':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:635:9: warning: unused variable 'acc_len' [-Wunused-variable]
635 | int acc_len;
| ^~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c: In function 'GICache_SetMeta':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:833:18: warning: unused variable 'stime' [-Wunused-variable]
833 | char meta[512], stime[128];
| ^~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:833:7: warning: unused variable 'meta' [-Wunused-variable]
833 | char meta[512], stime[128];
| ^~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c: In function 'GICache_GetAccFreqTab':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:984:11: warning: unused variable 'gi_len' [-Wunused-variable]
984 | int64_t gi_len = 0;
| ^~~~~~
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/reader_gicache.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/reader_gicache.cpp -o reader_gicache.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c -o gicache.o
/bin/rm -f libncbi_xreader_gicache.a .libncbi_xreader_gicache.a.stamp
/bin/rm -f libncbi_xreader_gicache-dll.so .libncbi_xreader_gicache-dll.so.stamp
ar cr libncbi_xreader_gicache.a reader_gicache.o gicache.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -shared -o libncbi_xreader_gicache-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 -fPIC reader_gicache.o gicache.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -llmdb -lpthread
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_gicache.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libncbi_xreader_gicache.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_gicache.a
/bin/ln -f .ncbi_xreader_gicache.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader_gicache.dep
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_gicache-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libncbi_xreader_gicache-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_gicache-dll.so
/bin/ln -f .ncbi_xreader_gicache-dll.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader_gicache-dll.dep
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache'
/usr/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/tmp//GMfifo2355 all_r || exit 5
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/test'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/test'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank'
/usr/pkg/bin/gmake -C lds2 -j3 --jobserver-auth=fifo:/tmp//GMfifo8633 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/lds2'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/lds2'
/usr/pkg/bin/gmake -C blastdb -j3 --jobserver-auth=fifo:/tmp//GMfifo8633 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb/unit_test/Makefile
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -j3 --jobserver-auth=fifo:/tmp//GMfifo1697 export-headers
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb'
gmake[6]: Nothing to be done for 'export-headers'.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -j3 --jobserver-auth=fifo:/tmp//GMfifo1697 export-headers
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb'
gmake[6]: Nothing to be done for 'export-headers'.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -j3 --jobserver-auth=fifo:/tmp//GMfifo1697 flag-stamps
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb'
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -j3 --jobserver-auth=fifo:/tmp//GMfifo1697 flag-stamps
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb'
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -j3 --jobserver-auth=fifo:/tmp//GMfifo1697 all
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp -o bdbloader.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp -o cached_sequence.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp -o local_blastdb_adapter.o
/bin/rm -f libncbi_xloader_blastdb.a .libncbi_xloader_blastdb.a.stamp
ar cr libncbi_xloader_blastdb.a bdbloader.o cached_sequence.o local_blastdb_adapter.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libncbi_xloader_blastdb.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_blastdb.a
/bin/ln -f .ncbi_xloader_blastdb.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xloader_blastdb.dep
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -j3 --jobserver-auth=fifo:/tmp//GMfifo1697 all
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp -o bdbloader_rmt.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp -o remote_blastdb_adapter.o
/bin/rm -f libncbi_xloader_blastdb_rmt.a .libncbi_xloader_blastdb_rmt.a.stamp
ar cr libncbi_xloader_blastdb_rmt.a bdbloader_rmt.o remote_blastdb_adapter.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb_rmt.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libncbi_xloader_blastdb_rmt.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_blastdb_rmt.a
/bin/ln -f .ncbi_xloader_blastdb_rmt.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xloader_blastdb_rmt.dep
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb'
/usr/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/tmp//GMfifo22805 all_r || exit 5
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb/unit_test'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb/unit_test'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb'
/usr/pkg/bin/gmake -C patcher -j3 --jobserver-auth=fifo:/tmp//GMfifo8633 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/patcher'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/patcher'
/usr/pkg/bin/gmake -C asn_cache -j3 --jobserver-auth=fifo:/tmp//GMfifo8633 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/asn_cache'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/asn_cache'
/usr/pkg/bin/gmake -C cdd -j3 --jobserver-auth=fifo:/tmp//GMfifo8633 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/cdd'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/cdd'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders'
/usr/pkg/bin/gmake -C simple -j3 --jobserver-auth=fifo:/tmp//GMfifo18755 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/simple TMPL=xobjsimple -j3 --jobserver-auth=fifo:/tmp//GMfifo18939 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/simple TMPL=xobjsimple -j3 --jobserver-auth=fifo:/tmp//GMfifo18939 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/simple TMPL=xobjsimple -j3 --jobserver-auth=fifo:/tmp//GMfifo18939 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/simple/simple_om.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/simple/simple_om.cpp -o simple_om.o
/bin/rm -f libxobjsimple.a .libxobjsimple.a.stamp
ar cr libxobjsimple.a simple_om.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjsimple.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxobjsimple.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxobjsimple.a
/bin/ln -f .xobjsimple.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xobjsimple.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple'
/usr/pkg/bin/gmake -C alnmgr -j3 --jobserver-auth=fifo:/tmp//GMfifo18755 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/demo/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/unit_test/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/demo/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/demo/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/unit_test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/unit_test/Makefile.in
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT demo/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr/demo/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr/unit_test/Makefile
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr TMPL=alnmgr -j3 --jobserver-auth=fifo:/tmp//GMfifo14275 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr TMPL=alnmgr -j3 --jobserver-auth=fifo:/tmp//GMfifo14275 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr TMPL=alnmgr -j3 --jobserver-auth=fifo:/tmp//GMfifo14275 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_builders.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_converters.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_generators.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_seqid.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_serial.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alndiag.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmap.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmapprint.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmix.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnpos_ci.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnsegments.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnseq.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvec.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvec_iterator.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/pairwise_aln.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/sparse_aln.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/sparse_ci.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alntext.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/score_builder_base.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_container.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_builders.cpp -o aln_builders.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_converters.cpp -o aln_converters.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_generators.cpp -o aln_generators.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_seqid.cpp -o aln_seqid.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_serial.cpp -o aln_serial.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alndiag.cpp -o alndiag.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_M/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmap.cpp: In member function 'ncbi::CRef<ncbi::objects::CSeq_align> ncbi::objects::CAlnMap::CreateAlignFromRange(const std::vector<int>&, ncbi::TSignedSeqPos, ncbi::TSignedSeqPos, ncbi::objects::CAlnMap::ESegmentTrimFlag)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmap.cpp:1475:35: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CAlnMap::TNumrow' {aka 'int'} and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
1475 | for (TNumrow row = 0; row < selected_rows.size(); row++) {
| ~~~~^~~~~~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp: In static member function 'static bool ncbi::objects::CAlnMixMatches::x_CompareChainScores(const ncbi::CRef<ncbi::objects::CAlnMixMatch>&, const ncbi::CRef<ncbi::objects::CAlnMixMatch>&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:76:55: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
76 | match1->m_ChainScore == match2->m_ChainScore &&
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
77 | match1->m_Score > match2->m_Score ||
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp: In member function 'void ncbi::objects::CAlnMixMatches::Add(const ncbi::objects::CDense_seg&, ncbi::objects::CAlnMixMatches::TAddFlags)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:192:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
192 | (aln_seq1->m_StrandScore > 0 &&
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
193 | strand1 == eNa_strand_minus ||
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:196:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
196 | aln_seq2->m_StrandScore > 0 &&
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
197 | strand2 == eNa_strand_minus ||
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:198:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
198 | aln_seq2->m_StrandScore < 0 &&
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
199 | strand2 != eNa_strand_minus)) {
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnsegments.cpp: In member function 'void ncbi::objects::CAlnMixSegments::FillUnalignedRegions()':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnsegments.cpp:311:27: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
311 | if (plus && prev_start_plus_len < start ||
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
T -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmap.cpp -o alnmap.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmapprint.cpp -o alnmapprint.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp -o alnmatch.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp -o alnmerger.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmix.cpp -o alnmix.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnpos_ci.cpp -o alnpos_ci.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnsegments.cpp -o alnsegments.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnseq.cpp -o alnseq.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvec.cpp -o alnvec.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvec_iterator.cpp -o alnvec_iterator.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp -o alnvecprint.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function 'void ncbi::objects::CAlnVecPrinter::PopsetStyle(int, ncbi::objects::CAlnVecPrinter::EAlgorithm)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:136:64: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
136 | if (left_seg < 0 || seg > right_seg && right_seg > 0) {
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function 'void ncbi::objects::CAlnVecPrinter::ClustalStyle(int, ncbi::objects::CAlnVecPrinter::EAlgorithm)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:300:64: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
300 | if (left_seg < 0 || seg > right_seg && right_seg > 0) {
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/sparse_aln.cpp: In member function 'std::string& ncbi::CSparseAln::GetAlnSeqString(ncbi::IAlnExplorer::TNumrow, std::string&, const TSignedRange&, bool) const':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/sparse_aln.cpp:702:46: warning: comparison of integer expressions of different signedness: 'ncbi::COpenRange<int>::position_type' {aka 'int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
702 | if (translate && aln_range.GetLength() >= trim_from + trim_to) {
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/pairwise_aln.cpp -o pairwise_aln.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/sparse_aln.cpp -o sparse_aln.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/sparse_ci.cpp -o sparse_ci.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alntext.cpp -o alntext.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/score_builder_base.cpp -o score_builder_base.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_container.cpp -o aln_container.o
/bin/rm -f libxalnmgr.a .libxalnmgr.a.stamp
ar cr libxalnmgr.a aln_builders.o aln_converters.o aln_generators.o aln_seqid.o aln_serial.o alndiag.o alnmap.o alnmapprint.o alnmatch.o alnmerger.o alnmix.o alnpos_ci.o alnsegments.o alnseq.o alnvec.o alnvec_iterator.o alnvecprint.o pairwise_aln.o sparse_aln.o sparse_ci.o alntext.o score_builder_base.o aln_container.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalnmgr.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxalnmgr.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxalnmgr.a
/bin/ln -f .xalnmgr.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xalnmgr.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr'
/usr/pkg/bin/gmake -C demo -j3 --jobserver-auth=fifo:/tmp//GMfifo14275 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr/demo'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr/demo'
/usr/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/tmp//GMfifo14275 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr/unit_test'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr/unit_test'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr'
/usr/pkg/bin/gmake -C cddalignview -j3 --jobserver-auth=fifo:/tmp//GMfifo18755 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cddalignview'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cddalignview'
/usr/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/tmp//GMfifo18755 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/test'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/test'
/usr/pkg/bin/gmake -C manip -j3 --jobserver-auth=fifo:/tmp//GMfifo18755 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/manip'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/manip'
/usr/pkg/bin/gmake -C eutils -j3 --jobserver-auth=fifo:/tmp//GMfifo18755 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/linkout/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/linkout/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/linkout/Makefile.in
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT linkout/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/linkout/Makefile
/usr/pkg/bin/gmake -C egquery -j3 --jobserver-auth=fifo:/tmp//GMfifo29213 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --dtd egquery all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
File egquery.module not found. Using defaults...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo1503 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=egquery MODULE_PATH=objtools/eutils/egquery MODULE_ASN=egquery.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m egquery.dtd -M "" -oA \
-oc egquery -or objtools/eutils/egquery -odi -od egquery.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd egquery.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery TMPL=egquery -j3 --jobserver-auth=fifo:/tmp//GMfifo1503 export-headers
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery TMPL=egquery -j3 --jobserver-auth=fifo:/tmp//GMfifo1503 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery TMPL=egquery -j3 --jobserver-auth=fifo:/tmp//GMfifo1503 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery/egquery__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery/egquery___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery/egquery__.cpp -o egquery__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery/egquery___.cpp -o egquery___.o
/bin/rm -f libegquery.a .libegquery.a.stamp
ar cr libegquery.a egquery__.o egquery___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libegquery.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libegquery.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libegquery.a
/bin/ln -f .egquery.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.egquery.dep
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery'
/usr/pkg/bin/gmake -C elink -j3 --jobserver-auth=fifo:/tmp//GMfifo29213 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --dtd elink all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
File elink.module not found. Using defaults...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo4900 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=elink MODULE_PATH=objtools/eutils/elink MODULE_ASN=elink.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m elink.dtd -M "" -oA \
-oc elink -or objtools/eutils/elink -odi -od elink.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd elink.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink TMPL=elink -j3 --jobserver-auth=fifo:/tmp//GMfifo4900 export-headers
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink TMPL=elink -j3 --jobserver-auth=fifo:/tmp//GMfifo4900 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink TMPL=elink -j3 --jobserver-auth=fifo:/tmp//GMfifo4900 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink/elink__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink/elink___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink/elink__.cpp -o elink__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink/elink___.cpp -o elink___.o
/bin/rm -f libelink.a .libelink.a.stamp
ar cr libelink.a elink__.o elink___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libelink.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libelink.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libelink.a
/bin/ln -f .elink.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.elink.dep
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink'
/usr/pkg/bin/gmake -C epost -j3 --jobserver-auth=fifo:/tmp//GMfifo29213 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --dtd epost all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
File epost.module not found. Using defaults...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo10402 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=epost MODULE_PATH=objtools/eutils/epost MODULE_ASN=epost.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m epost.dtd -M "" -oA \
-oc epost -or objtools/eutils/epost -odi -od epost.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd epost.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost TMPL=epost -j3 --jobserver-auth=fifo:/tmp//GMfifo10402 export-headers
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost TMPL=epost -j3 --jobserver-auth=fifo:/tmp//GMfifo10402 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost TMPL=epost -j3 --jobserver-auth=fifo:/tmp//GMfifo10402 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost/epost__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost/epost___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost/epost__.cpp -o epost__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost/epost___.cpp -o epost___.o
/bin/rm -f libepost.a .libepost.a.stamp
ar cr libepost.a epost__.o epost___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libepost.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libepost.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libepost.a
/bin/ln -f .epost.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.epost.dep
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost'
/usr/pkg/bin/gmake -C esearch -j3 --jobserver-auth=fifo:/tmp//GMfifo29213 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --dtd esearch all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
File esearch.module not found. Using defaults...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo10448 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=esearch MODULE_PATH=objtools/eutils/esearch MODULE_ASN=esearch.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m esearch.dtd -M "" -oA \
-oc esearch -or objtools/eutils/esearch -odi -od esearch.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd esearch.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch TMPL=esearch -j3 --jobserver-auth=fifo:/tmp//GMfifo10448 export-headers
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch TMPL=esearch -j3 --jobserver-auth=fifo:/tmp//GMfifo10448 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch TMPL=esearch -j3 --jobserver-auth=fifo:/tmp//GMfifo10448 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch/esearch__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch/esearch___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch/esearch__.cpp -o esearch__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch/esearch___.cpp -o esearch___.o
/bin/rm -f libesearch.a .libesearch.a.stamp
ar cr libesearch.a esearch__.o esearch___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libesearch.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libesearch.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libesearch.a
/bin/ln -f .esearch.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.esearch.dep
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch'
/usr/pkg/bin/gmake -C espell -j3 --jobserver-auth=fifo:/tmp//GMfifo29213 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --dtd espell all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
File espell.module not found. Using defaults...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo4689 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=espell MODULE_PATH=objtools/eutils/espell MODULE_ASN=espell.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m espell.dtd -M "" -oA \
-oc espell -or objtools/eutils/espell -odi -od espell.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd espell.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell TMPL=espell -j3 --jobserver-auth=fifo:/tmp//GMfifo4689 export-headers
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell TMPL=espell -j3 --jobserver-auth=fifo:/tmp//GMfifo4689 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell TMPL=espell -j3 --jobserver-auth=fifo:/tmp//GMfifo4689 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell/espell__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell/espell___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell/espell__.cpp -o espell__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell/espell___.cpp -o espell___.o
/bin/rm -f libespell.a .libespell.a.stamp
ar cr libespell.a espell__.o espell___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libespell.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libespell.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libespell.a
/bin/ln -f .espell.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.espell.dep
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell'
/usr/pkg/bin/gmake -C esummary -j3 --jobserver-auth=fifo:/tmp//GMfifo29213 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --dtd esummary all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
File esummary.module not found. Using defaults...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo13770 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=esummary MODULE_PATH=objtools/eutils/esummary MODULE_ASN=esummary.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m esummary.dtd -M "" -oA \
-oc esummary -or objtools/eutils/esummary -odi -od esummary.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd esummary.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary TMPL=esummary -j3 --jobserver-auth=fifo:/tmp//GMfifo13770 export-headers
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary TMPL=esummary -j3 --jobserver-auth=fifo:/tmp//GMfifo13770 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary TMPL=esummary -j3 --jobserver-auth=fifo:/tmp//GMfifo13770 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary/esummary__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary/esummary___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary/esummary__.cpp -o esummary__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary/esummary___.cpp -o esummary___.o
/bin/rm -f libesummary.a .libesummary.a.stamp
ar cr libesummary.a esummary__.o esummary___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libesummary.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libesummary.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libesummary.a
/bin/ln -f .esummary.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.esummary.dep
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary'
/usr/pkg/bin/gmake -C linkout -j3 --jobserver-auth=fifo:/tmp//GMfifo29213 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/linkout'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/linkout'
/usr/pkg/bin/gmake -C einfo -j3 --jobserver-auth=fifo:/tmp//GMfifo29213 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --dtd einfo all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
File einfo.module not found. Using defaults...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo15097 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=einfo MODULE_PATH=objtools/eutils/einfo MODULE_ASN=einfo.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m einfo.dtd -M "" -oA \
-oc einfo -or objtools/eutils/einfo -odi -od einfo.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd einfo.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo TMPL=einfo -j3 --jobserver-auth=fifo:/tmp//GMfifo15097 export-headers
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo TMPL=einfo -j3 --jobserver-auth=fifo:/tmp//GMfifo15097 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo TMPL=einfo -j3 --jobserver-auth=fifo:/tmp//GMfifo15097 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo/einfo__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo/einfo___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo/einfo__.cpp -o einfo__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo/einfo___.cpp -o einfo___.o
/bin/rm -f libeinfo.a .libeinfo.a.stamp
ar cr libeinfo.a einfo__.o einfo___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libeinfo.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libeinfo.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libeinfo.a
/bin/ln -f .einfo.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.einfo.dep
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo'
/usr/pkg/bin/gmake -C uilist -j3 --jobserver-auth=fifo:/tmp//GMfifo29213 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --dtd uilist all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
File uilist.module not found. Using defaults...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo4830 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=uilist MODULE_PATH=objtools/eutils/uilist MODULE_ASN=uilist.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m uilist.dtd -M "" -oA \
-oc uilist -or objtools/eutils/uilist -odi -od uilist.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd uilist.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist TMPL=uilist -j3 --jobserver-auth=fifo:/tmp//GMfifo4830 export-headers
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist TMPL=uilist -j3 --jobserver-auth=fifo:/tmp//GMfifo4830 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist TMPL=uilist -j3 --jobserver-auth=fifo:/tmp//GMfifo4830 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist/uilist__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist/uilist___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist/uilist__.cpp -o uilist__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist/uilist___.cpp -o uilist___.o
/bin/rm -f libuilist.a .libuilist.a.stamp
ar cr libuilist.a uilist__.o uilist___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libuilist.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libuilist.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libuilist.a
/bin/ln -f .uilist.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.uilist.dep
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist'
/usr/pkg/bin/gmake -C ehistory -j3 --jobserver-auth=fifo:/tmp//GMfifo29213 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --dtd ehistory all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
File ehistory.module not found. Using defaults...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo17956 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=ehistory MODULE_PATH=objtools/eutils/ehistory MODULE_ASN=ehistory.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m ehistory.dtd -M "" -oA \
-oc ehistory -or objtools/eutils/ehistory -odi -od ehistory.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd ehistory.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory TMPL=ehistory -j3 --jobserver-auth=fifo:/tmp//GMfifo17956 export-headers
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory TMPL=ehistory -j3 --jobserver-auth=fifo:/tmp//GMfifo17956 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory TMPL=ehistory -j3 --jobserver-auth=fifo:/tmp//GMfifo17956 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory/ehistory__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory/ehistory___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory/ehistory__.cpp -o ehistory__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory/ehistory___.cpp -o ehistory___.o
/bin/rm -f libehistory.a .libehistory.a.stamp
ar cr libehistory.a ehistory__.o ehistory___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libehistory.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libehistory.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libehistory.a
/bin/ln -f .ehistory.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ehistory.dep
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory'
/usr/pkg/bin/gmake -C efetch -j3 --jobserver-auth=fifo:/tmp//GMfifo29213 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/test/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/test/Makefile.in
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch/test/Makefile
cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --xsd efetch all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $...
File efetch.module not found. Using defaults...
/usr/pkg/bin/gmake -j3 --jobserver-auth=fifo:/tmp//GMfifo2650 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=efetch MODULE_PATH=objtools/eutils/efetch MODULE_ASN=efetch.xsd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src all
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch'
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++ \
-opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src -m efetch.xsd -M "" -oA \
-oc efetch -or objtools/eutils/efetch -odi -od efetch.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd efetch.dump \
datatool: 2.23.2
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch TMPL=efetch -j3 --jobserver-auth=fifo:/tmp//GMfifo2650 export-headers
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch TMPL=efetch -j3 --jobserver-auth=fifo:/tmp//GMfifo2650 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch TMPL=efetch -j3 --jobserver-auth=fifo:/tmp//GMfifo2650 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/efetch__.cpp:282:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/PubmedArticle.cpp: In function 'std::string eutils::{anonymous}::utf8_to_string(const string&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/PubmedArticle.cpp:157:12: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=]
157 | catch (CStringException) {
| ^~~~~~~~~~~~~~~~
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/efetch__.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/efetch___.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/efetch__.cpp -o efetch__.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/efetch___.cpp -o efetch___.o
/bin/rm -f libefetch.a .libefetch.a.stamp
ar cr libefetch.a efetch__.o efetch___.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libefetch.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libefetch.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libefetch.a
/bin/ln -f .efetch.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.efetch.dep
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch'
/usr/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/tmp//GMfifo2650 all_r || exit 5
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch/test'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch/test'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch'
/usr/pkg/bin/gmake -C api -j3 --jobserver-auth=fifo:/tmp//GMfifo29213 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api TMPL=eutils -j3 --jobserver-auth=fifo:/tmp//GMfifo1299 export-headers
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api TMPL=eutils -j3 --jobserver-auth=fifo:/tmp//GMfifo1299 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api TMPL=eutils -j3 --jobserver-auth=fifo:/tmp//GMfifo1299 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/efetch.cpp: In member function 'virtual ncbi::CRef<uilist::CIdList> ncbi::CEFetch_Request::FetchIdList(int)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/efetch.cpp:133:12: warning: catching polymorphic type 'class ncbi::CSerialException' by value [-Wcatch-value=]
133 | catch (CSerialException) {
| ^~~~~~~~~~~~~~~~
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/eutils.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/efetch.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/einfo.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/esearch.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/egquery.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/epost.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/elink.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/esummary.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/espell.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/ehistory.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/eutils.cpp -o eutils.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/efetch.cpp -o efetch.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/einfo.cpp -o einfo.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/esearch.cpp -o esearch.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/egquery.cpp -o egquery.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/epost.cpp -o epost.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/elink.cpp -o elink.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/esummary.cpp -o esummary.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/espell.cpp -o espell.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/ehistory.cpp -o ehistory.o
/bin/rm -f libeutils.a .libeutils.a.stamp
ar cr libeutils.a eutils.o efetch.o einfo.o esearch.o egquery.o epost.o elink.o esummary.o espell.o ehistory.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libeutils.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libeutils.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libeutils.a
/bin/ln -f .eutils.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.eutils.dep
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils'
/usr/pkg/bin/gmake -C edit -j3 --jobserver-auth=fifo:/tmp//GMfifo18755 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/unit_test/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/pubmed_fetch/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/pubmed_fetch/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/pubmed_fetch/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/pubmed_citmatch/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/test_remote_updater/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/unit_test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/unit_test/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/pubmed_citmatch/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/pubmed_citmatch/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/test_remote_updater/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/test_remote_updater/Makefile.in
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT pubmed_fetch/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT pubmed_citmatch/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/pubmed_citmatch/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/unit_test/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT test_remote_updater/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/pubmed_fetch/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/test_remote_updater/Makefile
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit TMPL=edit -j3 --jobserver-auth=fifo:/tmp//GMfifo15889 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit TMPL=edit -j3 --jobserver-auth=fifo:/tmp//GMfifo15889 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit TMPL=edit -j3 --jobserver-auth=fifo:/tmp//GMfifo15889 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'void ncbi::objects::edit::ConvertRawToDeltaByNs(ncbi::objects::CSeq_inst&, size_t, int, size_t, int, bool, int, int, int)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:1850:71: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
1850 | if (n_len >= min_unknown && (max_unknown < 0 || n_len <= max_unknown)) {
| ~~~~~~^~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:1852:74: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
1852 | } else if (n_len >= min_known && (max_known < 0 || n_len <= max_known)) {
| ~~~~~~^~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:1875:63: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
1875 | if (n_len >= min_unknown && (max_unknown < 0 || n_len <= max_unknown)) {
| ~~~~~~^~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:1877:66: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
1877 | } else if (n_len >= min_known && (max_known < 0 || n_len <= max_known)) {
| ~~~~~~^~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'void ncbi::objects::edit::TrimSequenceAndAnnotation(ncbi::objects::CBioseq_Handle, const TCuts&, ncbi::objects::edit::EInternalTrimType)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2185:14: warning: variable 'cds_range' set but not used [-Wunused-but-set-variable]
2185 | auto cds_range = copy_feat->GetLocation().GetTotalRange();
| ^~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'void ncbi::objects::edit::UpdateSeqLength(ncbi::CAutoInitRef<ncbi::objects::CDelta_ext>&, ncbi::objects::CBioseq_Handle&, ncbi::objects::CSeqMap_CI&, ncbi::objects::CSeq_inst_Base::TLength&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2459:12: warning: enumeration value 'eSeqSubMap' not handled in switch [-Wswitch]
2459 | switch (seqmap_ci.GetType()) {
| ^
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2459:12: warning: enumeration value 'eSeqRef' not handled in switch [-Wswitch]
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2459:12: warning: enumeration value 'eSeqEnd' not handled in switch [-Wswitch]
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2459:12: warning: enumeration value 'eSeqChunk' not handled in switch [-Wswitch]
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2459:12: warning: enumeration value 'eSeqLiteral' not handled in switch [-Wswitch]
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'bool ncbi::objects::edit::s_FindSegment(const ncbi::objects::CDense_seg&, ncbi::objects::CDense_seg_Base::TDim, ncbi::TSeqPos, ncbi::objects::CDense_seg_Base::TNumseg&, ncbi::TSeqPos&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2882:21: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'ncbi::TSignedSeqPos' {aka 'int'} [-Wsign-compare]
2882 | if (pos >= start && pos < start + len) {
| ~~~~^~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2882:39: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'ncbi::TSignedSeqPos' {aka 'int'} [-Wsign-compare]
2882 | if (pos >= start && pos < start + len) {
| ~~~~^~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'void ncbi::objects::edit::TrimSeqAlign(ncbi::objects::CBioseq_Handle, ncbi::CRef<ncbi::objects::CSeq_align>, const TCuts&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:3086:32: warning: comparison of integer expressions of different signedness: 'ncbi::TSignedSeqPos' {aka 'int'} and 'ncbi::TSeqPos' {aka 'unsigned int'} [-Wsign-compare]
3086 | else if (seg_start < cut_from) {
| ~~~~~~~~~~^~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:3089:32: warning: comparison of integer expressions of different signedness: 'ncbi::TSignedSeqPos' {aka 'int'} and 'ncbi::TSeqPos' {aka 'unsigned int'} [-Wsign-compare]
3089 | else if (seg_start >= cut_from &&
| ~~~~~~~~~~^~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/promote.cpp: In member function 'void ncbi::objects::edit::CPromote::x_PromoteCdregion(ncbi::objects::CSeq_feat&, ncbi::objects::edit::CPromote::TRnaMap*) const':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/promote.cpp:228:68: warning: 'static void ncbi::objects::CCdregion_translate::TranslateCdregion(std::string&, const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, bool, bool, bool*, ncbi::objects::CCdregion_translate::ETranslationLengthProblemOptions)' is deprecated [-Wdeprecated-declarations]
228 | remove_trailingX);
| ^
In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/promote.cpp:52:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/objmgr/util/sequence.hpp:966:17: note: declared here
966 | static void TranslateCdregion(string& prot,
| ^~~~~~~~~~~~~~~~~
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/gene_utils.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/promote.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/autodef_with_tax.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/field_handler.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/apply_object.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/string_constraint.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seqid_guesser.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/dblink_field.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/struc_comm_field.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/text_desc_field.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/gb_block_field.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/link_cds_mrna.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/cds_fix.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/loc_edit.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/mail_report.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/feattable_edit.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/gaps_edit.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/source_edit.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/rna_edit.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/remote_updater.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/eutils_updater.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/parse_text_options.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/publication_edit.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/gap_trim.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/external_annots.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/feature_propagate.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/text_object_description.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_edit.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/pub_fix.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_asn_reader.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_file.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_file_process.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_asn_loader.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_asn_macro_reader.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/gene_utils.cpp -o gene_utils.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp -o seq_entry_edit.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/promote.cpp -o promote.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/autodef_with_tax.cpp -o autodef_with_tax.o
/tmp/pkgbuild/biology/ncbi-blast+/work.a/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seqid_guesser.cpp: In constructor 'ncbi::objects::edit::CSeqIdGuesser::CSeqIdGuesser(ncbi::objects::CSeq_entry_Handle)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seqid_guesser.cpp:92:91: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations]
92 | size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast);
| ^
In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbistd.hpp:37,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:35,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/objects/general/Dbtag_.hpp:43,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/objects/general/Dbtag.hpp:44,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seqid_guesser.cpp:31:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbistr.hpp:5461:11: note: declared here
5461 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern,
| ^~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seqid_guesser.cpp: In static member function 'static std::vector<std::__cxx11::basic_string<char> > ncbi::objects::edit::CSeqIdGuesser::GetIdStrings(ncbi::objects::CBioseq_Handle)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seqid_guesser.cpp:171:87: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations]
171 | size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast);
| ^
In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbistd.hpp:37,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:35,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/objects/general/Dbtag_.hpp:43,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/objects/general/Dbtag.hpp:44,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seqid_guesser.cpp:31:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbistr.hpp:5461:11: note: declared here
5461 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern,
| ^~~~
lpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/field_handler.cpp -o field_handler.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/apply_object.cpp -o apply_object.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/string_constraint.cpp -o string_constraint.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seqid_guesser.cpp -o seqid_guesser.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/dblink_field.cpp -o dblink_field.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/struc_comm_field.cpp -o struc_comm_field.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/text_desc_field.cpp -o text_desc_field.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/gb_block_field.cpp -o gb_block_field.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/link_cds_mrna.cpp -o link_cds_mrna.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/cds_fix.cpp -o cds_fix.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/loc_edit.cpp -o loc_edit.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenm/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/cds_fix.cpp: In function 'bool ncbi::objects::edit::AdjustForCDSPartials(const ncbi::objects::CSeq_feat&, ncbi::objects::CSeq_entry_Handle)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/cds_fix.cpp:457:82: warning: 'bool ncbi::objects::edit::AdjustProteinMolInfoToMatchCDS(ncbi::objects::CMolInfo&, const ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations]
457 | any_change |= AdjustProteinMolInfoToMatchCDS((*it)->SetMolinfo(), cds);
| ^
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/cds_fix.cpp:366:6: note: declared here
366 | bool AdjustProteinMolInfoToMatchCDS(CMolInfo& molinfo, const CSeq_feat& cds)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/cds_fix.cpp:463:75: warning: 'bool ncbi::objects::edit::AdjustProteinMolInfoToMatchCDS(ncbi::objects::CMolInfo&, const ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations]
463 | AdjustProteinMolInfoToMatchCDS(new_molinfo_desc->SetMolinfo(), cds);
| ^
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/cds_fix.cpp:366:6: note: declared here
366 | bool AdjustProteinMolInfoToMatchCDS(CMolInfo& molinfo, const CSeq_feat& cds)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/rna_edit.cpp: In member function 'bool ncbi::objects::edit::CFindITSParser::IsLengthTooLarge(const string&, int, int, const std::vector<int>&, const std::vector<int>&, const std::vector<bool>&, int)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/rna_edit.cpp:259:31: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<bool>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
259 | for (int j = i + 1; j < spans.size(); j++)
| ~~^~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/remote_updater.cpp: In member function 'void ncbi::objects::edit::CRemoteUpdater::UpdateOrgFromTaxon(ncbi::objects::CSeqdesc&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/remote_updater.cpp:356:38: warning: 'void ncbi::objects::edit::CRemoteUpdater::UpdateOrgFromTaxon(ncbi::objects::edit::CRemoteUpdater::FLogger, ncbi::objects::CSeqdesc&)' is deprecated [-Wdeprecated-declarations]
356 | UpdateOrgFromTaxon(m_logger, desc);
| ^
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/remote_updater.cpp:318:6: note: declared here
318 | void CRemoteUpdater::UpdateOrgFromTaxon(FLogger logger, CSeqdesc& desc)
| ^~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/remote_updater.cpp: In member function 'void ncbi::objects::edit::CRemoteUpdater::UpdateOrgFromTaxon(ncbi::objects::CSeq_entry&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/remote_updater.cpp:586:39: warning: 'void ncbi::objects::edit::CRemoteUpdater::UpdateOrgFromTaxon(ncbi::objects::edit::CRemoteUpdater::FLogger, ncbi::objects::CSeq_entry&)' is deprecated [-Wdeprecated-declarations]
586 | UpdateOrgFromTaxon(m_logger, entry);
| ^
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/remote_updater.cpp:552:6: note: declared here
552 | void CRemoteUpdater::UpdateOrgFromTaxon(FLogger logger, CSeq_entry& entry)
| ^~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/remote_updater.cpp: In member function 'void ncbi::objects::edit::CRemoteUpdater::UpdateOrgFromTaxon(ncbi::objects::edit::CRemoteUpdater::FLogger, ncbi::objects::CSeq_entry_EditHandle&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/remote_updater.cpp:593:59: warning: 'void ncbi::objects::edit::CRemoteUpdater::UpdateOrgFromTaxon(ncbi::objects::edit::CRemoteUpdater::FLogger, ncbi::objects::CSeqdesc&)' is deprecated [-Wdeprecated-declarations]
593 | UpdateOrgFromTaxon(logger, (CSeqdesc&)*desc_it);
| ^
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/remote_updater.cpp:318:6: note: declared here
318 | void CRemoteUpdater::UpdateOrgFromTaxon(FLogger logger, CSeqdesc& desc)
| ^~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/parse_text_options.cpp: In function 'ncbi::SIZE_TYPE ncbi::objects::edit::FindWithOptions(const string&, const string&, ncbi::SIZE_TYPE, bool, bool)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/parse_text_options.cpp:47:73: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations]
47 | pos = NStr::Find(str, pattern, pos, NPOS, NStr::eFirst, str_case);
| ^
In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbistd.hpp:37,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/objtools/edit/parse_text_options.hpp:34,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/parse_text_options.cpp:33:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbistr.hpp:5461:11: note: declared here
5461 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern,
| ^~~~
p -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/mail_report.cpp -o mail_report.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/feattable_edit.cpp -o feattable_edit.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/gaps_edit.cpp -o gaps_edit.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/source_edit.cpp -o source_edit.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/rna_edit.cpp -o rna_edit.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/remote_updater.cpp -o remote_updater.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/eutils_updater.cpp -o eutils_updater.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/parse_text_options.cpp -o parse_text_options.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/publication_edit.cpp -o publication_edit.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/gap_trim.cpp -o gap_trim.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/external_annots.cpp -o external_annots.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/text_object_description.cpp:336:15: warning: 'std::string ncbi::objects::edit::GetTextObjectDescription(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, const string&)' defined but not used [-Wunused-function]
336 | static string GetTextObjectDescription(const CSeq_feat& seq_feat, CScope& scope, const string& product)
| ^~~~~~~~~~~~~~~~~~~~~~~~
-DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/feature_propagate.cpp -o feature_propagate.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/text_object_description.cpp -o text_object_description.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_edit.cpp -o seq_edit.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/pub_fix.cpp -o pub_fix.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_asn_reader.cpp -o huge_asn_reader.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_file.cpp -o huge_file.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_file_process.cpp -o huge_file_process.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_asn_loader.cpp -o huge_asn_loader.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_asn_macro_reader.cpp -o huge_asn_macro_reader.o
/bin/rm -f libxobjedit.a .libxobjedit.a.stamp
ar cr libxobjedit.a gene_utils.o seq_entry_edit.o promote.o autodef_with_tax.o field_handler.o apply_object.o string_constraint.o seqid_guesser.o dblink_field.o struc_comm_field.o text_desc_field.o gb_block_field.o link_cds_mrna.o cds_fix.o loc_edit.o mail_report.o feattable_edit.o gaps_edit.o source_edit.o rna_edit.o remote_updater.o eutils_updater.o parse_text_options.o publication_edit.o gap_trim.o external_annots.o feature_propagate.o text_object_description.o seq_edit.o pub_fix.o huge_asn_reader.o huge_file.o huge_file_process.o huge_asn_loader.o huge_asn_macro_reader.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjedit.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxobjedit.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxobjedit.a
/bin/ln -f .xobjedit.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xobjedit.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit'
/usr/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/tmp//GMfifo15889 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/unit_test'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/unit_test'
/usr/pkg/bin/gmake -C pubmed_fetch -j3 --jobserver-auth=fifo:/tmp//GMfifo15889 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/pubmed_fetch'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/pubmed_fetch'
/usr/pkg/bin/gmake -C pubmed_citmatch -j3 --jobserver-auth=fifo:/tmp//GMfifo15889 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/pubmed_citmatch'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/pubmed_citmatch'
/usr/pkg/bin/gmake -C test_remote_updater -j3 --jobserver-auth=fifo:/tmp//GMfifo15889 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/test_remote_updater'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/test_remote_updater'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit'
/usr/pkg/bin/gmake -C cleanup -j3 --jobserver-auth=fifo:/tmp//GMfifo18755 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/test/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/test/Makefile.in
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup/test/Makefile
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup TMPL=cleanup -j3 --jobserver-auth=fifo:/tmp//GMfifo12791 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup TMPL=cleanup -j3 --jobserver-auth=fifo:/tmp//GMfifo12791 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup TMPL=cleanup -j3 --jobserver-auth=fifo:/tmp//GMfifo12791 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup.cpp: In static member function 'static bool ncbi::objects::CCleanup::x_HasShortIntron(const ncbi::objects::CSeq_loc&, size_t)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup.cpp:2909:68: warning: comparison of integer expressions of different signedness: 'long int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
2909 | if (abs((long int)this_start - (long int)prev_end) < min_len) {
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup.cpp: In static member function 'static bool ncbi::objects::CCleanup::DecodeXMLMarkChanged(std::string&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup.cpp:4192:21: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
4192 | idx < sizeof(transformations)/sizeof(transformations[0]);
| ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp: In static member function 'static bool ncbi::objects::CCleanup::s_AddNumToUserField(ncbi::objects::CUser_field&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp:398:53: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CUser_field_Base::TNum' {aka 'int'} and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
398 | if (!field.IsSetNum() || field.GetNum() != field.GetData().GetStrs().size()) {
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp:404:53: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CUser_field_Base::TNum' {aka 'int'} and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
404 | if (!field.IsSetNum() || field.GetNum() != field.GetData().GetInts().size()) {
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp:410:53: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CUser_field_Base::TNum' {aka 'int'} and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
410 | if (!field.IsSetNum() || field.GetNum() != field.GetData().GetReals().size()) {
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp:416:53: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CUser_field_Base::TNum' {aka 'int'} and 'std::vector<std::vector<char>*>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
416 | if (!field.IsSetNum() || field.GetNum() != field.GetData().GetOss().size()) {
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/autogenerated_cleanup.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_utils.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/gene_qual_normalization.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_author.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_pub.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/capitalization_string.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/fix_feature_id.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_message.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/huge_file_cleanup.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/influenza_set.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/autogenerated_cleanup.cpp -o autogenerated_cleanup.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp -o autogenerated_extended_cleanup.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup.cpp -o cleanup.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_utils.cpp -o cleanup_utils.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/gene_qual_normalization.cpp -o gene_qual_normalization.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp -o cleanup_user_object.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_author.cpp -o cleanup_author.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src//tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/capitalization_string.cpp: In function 'void ncbi::objects::CapitalizeAfterApostrophe(std::string&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/capitalization_string.cpp:914:25: warning: comparison of integer expressions of different signedness: 'const int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
914 | if (rslt[0] != start)
| ~~~~~~~~^~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/capitalization_string.cpp: In function 'void ncbi::objects::FixAffiliationShortWordsInElement(std::string&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/capitalization_string.cpp:953:29: warning: comparison of integer expressions of different signedness: 'const int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
953 | if (rslt[0] != start)
| ~~~~~~~~^~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/capitalization_string.cpp: In function 'void ncbi::objects::FixOrdinalNumbers(std::string&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/capitalization_string.cpp:980:29: warning: comparison of integer expressions of different signedness: 'const int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
980 | if (rslt[0] != start)
| ~~~~~~~~^~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp: In member function 'void ncbi::objects::CNewCleanup_imp::x_RemoveFlankingQuotes(std::string&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp:5939:22: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
5939 | for( ; first_pos <= last_pos ; ++first_pos, --last_pos ) {
| ~~~~~~~~~~^~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp:5953:19: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
5953 | if( first_pos > last_pos ) {
| ~~~~~~~~~~^~~~~~~~~~
c++/src/objtools/cleanup/cleanup_pub.cpp -o cleanup_pub.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp -o newcleanupp.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/capitalization_string.cpp -o capitalization_string.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/fix_feature_id.cpp -o fix_feature_id.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_message.cpp -o cleanup_message.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/huge_file_cleanup.cpp -o huge_file_cleanup.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/influenza_set.cpp -o influenza_set.o
/bin/rm -f libxcleanup.a .libxcleanup.a.stamp
ar cr libxcleanup.a autogenerated_cleanup.o autogenerated_extended_cleanup.o cleanup.o cleanup_utils.o gene_qual_normalization.o cleanup_user_object.o cleanup_author.o cleanup_pub.o newcleanupp.o capitalization_string.o fix_feature_id.o cleanup_message.o huge_file_cleanup.o influenza_set.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcleanup.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxcleanup.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxcleanup.a
/bin/ln -f .xcleanup.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xcleanup.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup'
/usr/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/tmp//GMfifo12791 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup/test'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup/test'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup'
/usr/pkg/bin/gmake -C format -j3 --jobserver-auth=fifo:/tmp//GMfifo18755 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format TMPL=xformat -j3 --jobserver-auth=fifo:/tmp//GMfifo19818 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format TMPL=xformat -j3 --jobserver-auth=fifo:/tmp//GMfifo19818 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format TMPL=xformat -j3 --jobserver-auth=fifo:/tmp//GMfifo19818 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/accession_item.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/comment_item.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/basecount_item.cpp.
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Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genome_item.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/ctrl_items.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/keywords_item.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/locus_item.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/primary_item.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/reference_item.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/segment_item.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/sequence_item.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/source_item.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/version_item.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/wgs_item.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/tsa_item.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_seqloc.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/qualifiers.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/context.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gather_items.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/embl_gather.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genbank_gather.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/item_formatter.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/embl_formatter.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genbank_formatter.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/format_item_ostream.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/item_ostream.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/ostream_text_ostream.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/origin_item.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/ftable_gather.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/ftable_formatter.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gbseq_formatter.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_config.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/alignment_item.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gap_item.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genome_project_item.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/sam_formatter.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/cigar_formatter.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gather_iter.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/html_anchor_item.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/inst_info_map.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gene_finder.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_qual_slots.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/accession_item.cpp -o accession_item.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/i/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/comment_item.cpp: In function 'void ncbi::objects::s_GetAssemblyInfo(const ncbi::objects::CBioseqContext&, std::string&, const ncbi::objects::CUser_object&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/comment_item.cpp:469:16: warning: unused variable 'is_html' [-Wunused-variable]
469 | const bool is_html = ctx.Config().DoHTML();
| ^~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/feature_item.cpp: In function 'const string& ncbi::objects::s_AaName(int)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/feature_item.cpp:2155:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long unsigned int'} [-Wsign-compare]
2155 | if ( idx > 0 && idx < ArraySize(s_TrnaList) ) {
| ~~~~^~~~~~~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/keywords_item.cpp: In member function 'virtual void ncbi::objects::CKeywordsItem::x_GatherInfo(ncbi::objects::CBioseqContext&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/keywords_item.cpp:345:18: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=]
345 | } catch (CException) {
| ^~~~~~~~~~
nclude -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/basecount_item.cpp -o basecount_item.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/comment_item.cpp -o comment_item.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/contig_item.cpp -o contig_item.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/date_item.cpp -o date_item.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/dbsource_item.cpp -o dbsource_item.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/defline_item.cpp -o defline_item.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/feature_item.cpp -o feature_item.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genome_item.cpp -o genome_item.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/ctrl_items.cpp -o ctrl_items.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/keywords_item.cpp -o keywords_item.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/locus_item.cpp -o locus_item.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/primary_item.cpp: In member function 'void ncbi::objects::CPrimaryItem::x_GetStrForPrimary(ncbi::objects::CBioseqContext&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/primary_item.cpp:300:63: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'ncbi::TSignedSeqPos' {aka 'int'} [-Wsign-compare]
300 | if ( ctx.IsRefSeq() && last_stop > -1 && (this_start > (last_stop + 1)) ) {
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/primary_item.cpp:301:28: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'int' [-Wsign-compare]
301 | if (this_start < (15 + last_stop) ) {
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/source_item.cpp: In member function 'void ncbi::objects::CSourceItem::x_GatherInfoIdx(ncbi::objects::CBioseqContext&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/source_item.cpp:183:23: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
183 | for (int i = 0; i < sizeof (legal_organelles) / sizeof (const char*); i++) {
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/source_item.cpp: In member function 'void ncbi::objects::CSourceItem::x_SetSource(const ncbi::objects::CBioSource&, const ncbi::CSerialObject&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/source_item.cpp:388:21: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CBioSource_Base::TGenome' {aka 'int'} and 'const unsigned int' [-Wsign-compare]
388 | if ( genome >= s_organelle_prefix_size ) {
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/primary_item.cpp -o primary_item.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/reference_item.cpp -o reference_item.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/segment_item.cpp -o segment_item.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/sequence_item.cpp -o sequence_item.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/source_item.cpp -o source_item.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/version_item.cpp -o version_item.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/wgs_item.cpp -o wgs_item.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/tsa_item.cpp -o tsa_item.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_seqloc.cpp -o flat_seqloc.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/qualifiers.cpp -o qualifiers.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/context.cpp -o context.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++//tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/qualifiers.cpp: In member function 'virtual void ncbi::objects::CFlatSeqIdQVal::Format(ncbi::objects::TFlatQuals&, const ncbi::CTempString&, ncbi::objects::CBioseqContext&, ncbi::objects::IFlatQVal::TFlags) const':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/qualifiers.cpp:1105:10: warning: unused variable 'bHtml' [-Wunused-variable]
1105 | bool bHtml = ctx.Config().DoHTML();
| ^~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gather_items.cpp:970:13: warning: 'bool ncbi::objects::s_NsAreGaps(const ncbi::objects::CBioseq_Handle&, ncbi::objects::CBioseqContext&)' defined but not used [-Wunused-function]
970 | static bool s_NsAreGaps(const CBioseq_Handle& seq, CBioseqContext& ctx)
| ^~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp: In member function 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_submit&, ncbi::objects::CScope&, ncbi::objects::CFlatItemOStream&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:536:32: warning: 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_entry_Handle&, ncbi::objects::CFlatItemOStream&)' is deprecated [-Wdeprecated-declarations]
536 | Generate(entry, item_os);
| ^
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:197:6: note: declared here
197 | void CFlatFileGenerator::Generate
| ^~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp: In member function 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CBioseq&, ncbi::objects::CScope&, ncbi::objects::CFlatItemOStream&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:548:28: warning: 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_entry_Handle&, ncbi::objects::CFlatItemOStream&)' is deprecated [-Wdeprecated-declarations]
548 | Generate(entry, item_os);
| ^
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:197:6: note: declared here
197 | void CFlatFileGenerator::Generate
| ^~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp: In member function 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_loc&, ncbi::objects::CScope&, ncbi::objects::CFlatItemOStream&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:574:28: warning: 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_entry_Handle&, ncbi::objects::CFlatItemOStream&)' is deprecated [-Wdeprecated-declarations]
574 | Generate(entry, item_os);
| ^
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:197:6: note: declared here
197 | void CFlatFileGenerator::Generate
| ^~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp: In member function 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CBioseq_Handle&, ncbi::objects::CFlatItemOStream&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:583:28: warning: 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_entry_Handle&, ncbi::objects::CFlatItemOStream&)' is deprecated [-Wdeprecated-declarations]
583 | Generate(entry, item_os);
| ^
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:197:6: note: declared here
197 | void CFlatFileGenerator::Generate
| ^~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp: In member function 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_id&, const TRange&, ncbi::objects::ENa_strand, ncbi::objects::CScope&, ncbi::objects::CFlatItemOStream&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:604:38: warning: 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_loc&, ncbi::objects::CScope&, ncbi::objects::CFlatItemOStream&)' is deprecated [-Wdeprecated-declarations]
604 | Generate(*loc, scope, item_os);
| ^
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:552:6: note: declared here
552 | void CFlatFileGenerator::Generate
| ^~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp: In member function 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_submit&, ncbi::objects::CScope&, ncbi::CNcbiOstream&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:1003:37: warning: 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_submit&, ncbi::objects::CScope&, ncbi::objects::CFlatItemOStream&)' is deprecated [-Wdeprecated-declarations]
1003 | Generate(submit, scope, *item_os);
| ^
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:509:6: note: declared here
509 | void CFlatFileGenerator::Generate
| ^~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp: In member function 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CBioseq&, ncbi::objects::CScope&, ncbi::CNcbiOstream&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:1017:29: warning: 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_entry_Handle&, ncbi::objects::CFlatItemOStream&)' is deprecated [-Wdeprecated-declarations]
1017 | Generate(entry, *item_os);
| ^
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:197:6: note: declared here
197 | void CFlatFileGenerator::Generate
| ^~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp: In member function 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_entry_Handle&, ncbi::CNcbiOstream&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:1028:29: warning: 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_entry_Handle&, ncbi::objects::CFlatItemOStream&)' is deprecated [-Wdeprecated-declarations]
1028 | Generate(entry, *item_os);
| ^
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:197:6: note: declared here
197 | void CFlatFileGenerator::Generate
| ^~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp: In member function 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CBioseq_Handle&, ncbi::CNcbiOstream&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:1040:29: warning: 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_entry_Handle&, ncbi::objects::CFlatItemOStream&)' is deprecated [-Wdeprecated-declarations]
1040 | Generate(entry, *item_os);
| ^
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:197:6: note: declared here
197 | void CFlatFileGenerator::Generate
| ^~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp: In member function 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_loc&, ncbi::objects::CScope&, ncbi::CNcbiOstream&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:1052:34: warning: 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_loc&, ncbi::objects::CScope&, ncbi::objects::CFlatItemOStream&)' is deprecated [-Wdeprecated-declarations]
1052 | Generate(loc, scope, *item_os);
| ^
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:552:6: note: declared here
552 | void CFlatFileGenerator::Generate
| ^~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp: In member function 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_id&, const TRange&, ncbi::objects::ENa_strand, ncbi::objects::CScope&, ncbi::CNcbiOstream&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:1066:48: warning: 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_id&, const TRange&, ncbi::objects::ENa_strand, ncbi::objects::CScope&, ncbi::objects::CFlatItemOStream&)' is deprecated [-Wdeprecated-declarations]
1066 | Generate(id, range, strand, scope, *item_os);
| ^
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:587:6: note: declared here
587 | void CFlatFileGenerator::Generate
| ^~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genbank_formatter.cpp: In member function 'virtual void ncbi::objects::CGenbankFormatter::FormatSequence(const ncbi::objects::CSequenceItem&, ncbi::objects::IFlatTextOStream&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genbank_formatter.cpp:1990:18: warning: catching polymorphic type 'class ncbi::objects::CSeqVectorException' by value [-Wcatch-value=]
1990 | } catch (CSeqVectorException) {
| ^~~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genbank_formatter.cpp:2031:26: warning: catching polymorphic type 'class ncbi::objects::CSeqVectorException' by value [-Wcatch-value=]
2031 | } catch (CSeqVectorException) {
| ^~~~~~~~~~~~~~~~~~~
ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gather_items.cpp -o gather_items.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/embl_gather.cpp -o embl_gather.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genbank_gather.cpp -o genbank_gather.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp -o flat_file_generator.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/item_formatter.cpp -o item_formatter.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/embl_formatter.cpp -o embl_formatter.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genbank_formatter.cpp -o genbank_formatter.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/format_item_ostream.cpp -o format_item_ostream.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/item_ostream.cpp -o item_ostream.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/ostream_text_ostream.cpp -o ostream_text_ostream.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/origin_item.cpp -o origin_item.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/in/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genbank_formatter.cpp: At global scope:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genbank_formatter.cpp:285:15: warning: 'std::string ncbi::objects::s_get_anchor_html(const string&, ncbi::TGi)' defined but not used [-Wunused-function]
285 | static string s_get_anchor_html(const string & sAnchorName, TGi iGi )
| ^~~~~~~~~~~~~~~~~
c -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/ftable_gather.cpp -o ftable_gather.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/ftable_formatter.cpp -o ftable_formatter.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gbseq_formatter.cpp -o gbseq_formatter.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_config.cpp -o flat_file_config.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/alignment_item.cpp -o alignment_item.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gap_item.cpp -o gap_item.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genome_project_item.cpp -o genome_project_item.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/sam_formatter.cpp -o sam_formatter.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/cigar_formatter.cpp -o cigar_formatter.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gather_iter.cpp -o gather_iter.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/html_anchor_item.cpp -o html_anchor_item.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/inst_info_map.cpp -o inst_info_map.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gene_finder.cpp -o gene_finder.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_qual_slots.cpp -o flat_qual_slots.o
/bin/rm -f libxformat.a .libxformat.a.stamp
ar cr libxformat.a accession_item.o basecount_item.o comment_item.o contig_item.o date_item.o dbsource_item.o defline_item.o feature_item.o genome_item.o ctrl_items.o keywords_item.o locus_item.o primary_item.o reference_item.o segment_item.o sequence_item.o source_item.o version_item.o wgs_item.o tsa_item.o flat_seqloc.o qualifiers.o context.o gather_items.o embl_gather.o genbank_gather.o flat_file_generator.o item_formatter.o embl_formatter.o genbank_formatter.o format_item_ostream.o item_ostream.o ostream_text_ostream.o origin_item.o ftable_gather.o ftable_formatter.o gbseq_formatter.o flat_file_config.o alignment_item.o gap_item.o genome_project_item.o sam_formatter.o cigar_formatter.o gather_iter.o html_anchor_item.o inst_info_map.o gene_finder.o flat_qual_slots.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxformat.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxformat.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxformat.a
/bin/ln -f .xformat.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xformat.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format'
/usr/pkg/bin/gmake -C validator -j3 --jobserver-auth=fifo:/tmp//GMfifo18755 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/validator'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/validator'
/usr/pkg/bin/gmake -C asniotest -j3 --jobserver-auth=fifo:/tmp//GMfifo18755 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/asniotest'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/asniotest'
/usr/pkg/bin/gmake -C align -j3 --jobserver-auth=fifo:/tmp//GMfifo18755 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align'
/usr/pkg/bin/gmake -C seqmasks_io -j3 --jobserver-auth=fifo:/tmp//GMfifo18755 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/unit_test/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/unit_test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/unit_test/Makefile.in
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io/unit_test/Makefile
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -j3 --jobserver-auth=fifo:/tmp//GMfifo27804 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -j3 --jobserver-auth=fifo:/tmp//GMfifo27804 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -j3 --jobserver-auth=fifo:/tmp//GMfifo27804 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_int.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp -o mask_cmdline_args.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp -o mask_bdb_reader.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp -o mask_fasta_reader.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer.cpp -o mask_writer.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp -o mask_writer_fasta.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_int.cpp -o mask_writer_int.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp -o mask_writer_tab.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp -o mask_writer_seqloc.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp -o mask_writer_blastdb_maskinfo.o
/bin/rm -f libseqmasks_io.a .libseqmasks_io.a.stamp
ar cr libseqmasks_io.a mask_cmdline_args.o mask_bdb_reader.o mask_fasta_reader.o mask_writer.o mask_writer_fasta.o mask_writer_int.o mask_writer_tab.o mask_writer_seqloc.o mask_writer_blastdb_maskinfo.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqmasks_io.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libseqmasks_io.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libseqmasks_io.a
/bin/ln -f .seqmasks_io.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.seqmasks_io.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io'
/usr/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/tmp//GMfifo27804 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io/unit_test'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io/unit_test'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io'
/usr/pkg/bin/gmake -C align_format -j3 --jobserver-auth=fifo:/tmp//GMfifo18755 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format TMPL=align_format -j3 --jobserver-auth=fifo:/tmp//GMfifo8261 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format TMPL=align_format -j3 --jobserver-auth=fifo:/tmp//GMfifo8261 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format TMPL=align_format -j3 --jobserver-auth=fifo:/tmp//GMfifo8261 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/showalign.cpp: In member function 'void ncbi::align_format::CDisplaySeqalign::DisplaySeqalign(ncbi::CNcbiOstream&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/showalign.cpp:2104:33: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=]
2104 | } catch (CException e){
| ^
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/vectorscreen.cpp: In member function 'void ncbi::align_format::CVecscreen::x_MergeSeqalign(ncbi::objects::CSeq_align_set&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/vectorscreen.cpp:448:35: warning: unused variable 'da' [-Wunused-variable]
448 | const CSeq_align& da = *x_OrigAlignsById[*di];
| ^~
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/format_flags.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/align_format_util.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/showdefline.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/showalign.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/tabular.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/vectorscreen.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/seqalignfilter.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/taxFormat.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/aln_printer.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/format_flags.cpp -o format_flags.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/align_format_util.cpp -o align_format_util.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/showdefline.cpp -o showdefline.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/showalign.cpp -o showalign.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/tabular.cpp -o tabular.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/vectorscreen.cpp -o vectorscreen.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/seqalignfilter.cpp -o seqalignfilter.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/taxFormat.cpp -o taxFormat.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/aln_printer.cpp -o aln_printer.o
/bin/rm -f libalign_format.a .libalign_format.a.stamp
ar cr libalign_format.a format_flags.o align_format_util.o showdefline.o showalign.o tabular.o vectorscreen.o seqalignfilter.o taxFormat.o aln_printer.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libalign_format.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libalign_format.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libalign_format.a
/bin/ln -f .align_format.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.align_format.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format'
/usr/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/tmp//GMfifo8261 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format/unit_test'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
NOTE: Skipping project unit_test due to unmet requirements:
Boost.Test.Included
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format/unit_test'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Nothing to be done for 'mark-as-disabled_r'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format/unit_test'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format/unit_test'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format'
/usr/pkg/bin/gmake -C snputil -j3 --jobserver-auth=fifo:/tmp//GMfifo18755 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/snputil'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/snputil'
/usr/pkg/bin/gmake -C uudutil -j3 --jobserver-auth=fifo:/tmp//GMfifo18755 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/uudutil'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/uudutil'
/usr/pkg/bin/gmake -C variation -j3 --jobserver-auth=fifo:/tmp//GMfifo18755 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/variation'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/variation'
/usr/pkg/bin/gmake -C writers -j3 --jobserver-auth=fifo:/tmp//GMfifo18755 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/writers'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/writers'
/usr/pkg/bin/gmake -C import -j3 --jobserver-auth=fifo:/tmp//GMfifo18755 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/import'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/import'
/usr/pkg/bin/gmake -C flatfile -j3 --jobserver-auth=fifo:/tmp//GMfifo18755 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/flatfile'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/flatfile'
gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools'
/usr/pkg/bin/gmake -C ctools -j3 --jobserver-auth=fifo:/tmp//GMfifo22236 all_r || exit 5
gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/ctools'
gmake[2]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/ctools'
/usr/pkg/bin/gmake -C sra -j3 --jobserver-auth=fifo:/tmp//GMfifo22236 all_r || exit 5
gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra'
gmake[2]: warning: -j3 forced in submake: resetting jobserver mode.
NOTE: Skipping project sra due to unmet requirements:
VDB
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
/usr/pkg/bin/gmake -C readers -j3 --jobserver-auth=fifo:/tmp//GMfifo22677 mark-as-disabled_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
/usr/pkg/bin/gmake -C sra -j3 --jobserver-auth=fifo:/tmp//GMfifo21442 mark-as-disabled_r || exit 5
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/sra/readers/sra TMPL=sraread -j3 --jobserver-auth=fifo:/tmp//GMfifo14130 mark-as-disabled
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra'
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/sra/readers/sra TMPL=srareadx -j3 --jobserver-auth=fifo:/tmp//GMfifo14130 mark-as-disabled
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra'
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra'
/bin/echo 'Warning: non-existent sub-project "test"'
Warning: non-existent sub-project "test"
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra'
/usr/pkg/bin/gmake -C bam -j3 --jobserver-auth=fifo:/tmp//GMfifo21442 mark-as-disabled_r || exit 5
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/bam'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/bam'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/bam'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/bam'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/bam'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/sra/readers/bam TMPL=bamread -j3 --jobserver-auth=fifo:/tmp//GMfifo570 mark-as-disabled
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/bam'
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/bam'
/bin/echo 'Warning: non-existent sub-project "test"'
Warning: non-existent sub-project "test"
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/bam'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers'
/usr/pkg/bin/gmake -C data_loaders -j3 --jobserver-auth=fifo:/tmp//GMfifo22677 mark-as-disabled_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
/usr/pkg/bin/gmake -C sra -j3 --jobserver-auth=fifo:/tmp//GMfifo9253 mark-as-disabled_r || exit 5
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/sra'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/sra'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/sra'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/sra'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: *** No rule to make target '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/sra'
NOTE: skipping project "ncbi_xloader_sra" due to unmet requirements
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/sra'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/sra'
/usr/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/tmp//GMfifo8685 mark-as-disabled_r || exit 5
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/sra/test'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Nothing to be done for 'mark-as-disabled_r'.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/sra/test'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/sra'
/usr/pkg/bin/gmake -C bam -j3 --jobserver-auth=fifo:/tmp//GMfifo9253 mark-as-disabled_r || exit 5
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/bam'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/bam'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/bam'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/bam'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: *** No rule to make target '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/bam'
NOTE: skipping project "ncbi_xloader_bam" due to unmet requirements
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/bam'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/bam'
/usr/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/tmp//GMfifo22514 mark-as-disabled_r || exit 5
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/bam/test'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Nothing to be done for 'mark-as-disabled_r'.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/bam/test'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/bam'
/usr/pkg/bin/gmake -C csra -j3 --jobserver-auth=fifo:/tmp//GMfifo9253 mark-as-disabled_r || exit 5
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/csra'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/csra'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/csra'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/csra'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: *** No rule to make target '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/csra'
NOTE: skipping project "ncbi_xloader_csra" due to unmet requirements
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/csra'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/csra'
/usr/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/tmp//GMfifo678 mark-as-disabled_r || exit 5
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/csra/test'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Nothing to be done for 'mark-as-disabled_r'.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/csra/test'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/csra'
/usr/pkg/bin/gmake -C wgs -j3 --jobserver-auth=fifo:/tmp//GMfifo9253 mark-as-disabled_r || exit 5
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/wgs'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/wgs'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/wgs'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/wgs'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: *** No rule to make target '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/wgs'
NOTE: skipping project "ncbi_xloader_wgs" due to unmet requirements
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/wgs'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/wgs'
/bin/echo 'Warning: non-existent sub-project "test"'
Warning: non-existent sub-project "test"
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/wgs'
/usr/pkg/bin/gmake -C vdbgraph -j3 --jobserver-auth=fifo:/tmp//GMfifo9253 mark-as-disabled_r || exit 5
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: *** No rule to make target '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph'
NOTE: skipping project "ncbi_xloader_vdbgraph" due to unmet requirements
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph'
/usr/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/tmp//GMfifo12503 mark-as-disabled_r || exit 5
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph/test'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Nothing to be done for 'mark-as-disabled_r'.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph/test'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph'
/usr/pkg/bin/gmake -C snp -j3 --jobserver-auth=fifo:/tmp//GMfifo9253 mark-as-disabled_r || exit 5
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/snp'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/snp'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/snp'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/snp'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: *** No rule to make target '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/snp'
NOTE: skipping project "ncbi_xloader_snp" due to unmet requirements
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/snp'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/snp'
/usr/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/tmp//GMfifo6334 mark-as-disabled_r || exit 5
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/snp/test'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Nothing to be done for 'mark-as-disabled_r'.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/snp/test'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/snp'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders'
/bin/echo 'Warning: non-existent sub-project "app"'
Warning: non-existent sub-project "app"
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra'
gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra'
/usr/pkg/bin/gmake -C algo -j3 --jobserver-auth=fifo:/tmp//GMfifo22236 all_r || exit 5
gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo'
gmake[2]: warning: -j3 forced in submake: resetting jobserver mode.
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/sequence/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/align/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/structure/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/sequence/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/sequence/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/structure/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/structure/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/gnomon/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/align/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/align/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/tree/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/phy_tree/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/tree/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/tree/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/gnomon/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/gnomon/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/seqqa/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/phy_tree/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/phy_tree/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/cobalt/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/seqqa/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/seqqa/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/text/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/volume_merge/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/cobalt/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/cobalt/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/text/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/text/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/primer/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/id_mapper/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/volume_merge/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/volume_merge/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/primer/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/primer/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/id_mapper/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/id_mapper/Makefile.in
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT sequence/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT align/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT structure/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/sequence/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/structure/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/align/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT gnomon/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT tree/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT phy_tree/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/phy_tree/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT seqqa/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/tree/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT cobalt/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/gnomon/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/seqqa/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/cobalt/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT text/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT volume_merge/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT primer/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/volume_merge/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT id_mapper/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/text/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/primer/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/id_mapper/Makefile
/usr/pkg/bin/gmake -C dustmask -j3 --jobserver-auth=fifo:/tmp//GMfifo2927 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/dustmask TMPL=xalgodustmask -j3 --jobserver-auth=fifo:/tmp//GMfifo26426 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/dustmask TMPL=xalgodustmask -j3 --jobserver-auth=fifo:/tmp//GMfifo26426 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/dustmask TMPL=xalgodustmask -j3 --jobserver-auth=fifo:/tmp//GMfifo26426 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/dustmask/symdust.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/dustmask/symdust.cpp -o symdust.o
/bin/rm -f libxalgodustmask.a .libxalgodustmask.a.stamp
ar cr libxalgodustmask.a symdust.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgodustmask.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxalgodustmask.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxalgodustmask.a
/bin/ln -f .xalgodustmask.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xalgodustmask.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask'
/usr/pkg/bin/gmake -C winmask -j3 --jobserver-auth=fifo:/tmp//GMfifo2927 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask TMPL=xalgowinmask -j3 --jobserver-auth=fifo:/tmp//GMfifo7806 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask TMPL=xalgowinmask -j3 --jobserver-auth=fifo:/tmp//GMfifo7806 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask TMPL=xalgowinmask -j3 --jobserver-auth=fifo:/tmp//GMfifo7806 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_score_mean.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_score_min.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_util.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_window.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_window_ambig.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_window_pattern.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_factory.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_ascii.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_uset_simple.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_factory.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_bin.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_uset_array.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_bin.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_uset_hash.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_obinary.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_cache_boost.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_counts_converter.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_dup_table.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_util.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_config.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker.cpp -o seq_masker.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_score_mean.cpp -o seq_masker_score_mean.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp -o seq_masker_score_mean_glob.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_score_min.cpp -o seq_masker_score_min.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_util.cpp -o seq_masker_util.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_window.cpp -o seq_masker_window.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_window_ambig.cpp -o seq_masker_window_ambig.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_window_pattern.cpp -o seq_masker_window_pattern.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp -o seq_masker_window_pattern_ambig.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_factory.cpp -o seq_masker_ostat_factory.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat.cpp -o seq_masker_ostat.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp -o seq_masker_ostat_ascii.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_ascii.cpp -o seq_masker_istat_ascii.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_uset_simple.cpp -o seq_masker_uset_simple.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_factory.cpp -o seq_masker_istat_factory.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_bin.cpp -o seq_masker_ostat_bin.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_uset_array.cpp -o seq_masker_uset_array.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_bin.cpp -o seq_masker_istat_bin.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt.cpp -o seq_masker_ostat_opt.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp -o seq_masker_ostat_opt_ascii.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_uset_hash.cpp -o seq_masker_uset_hash.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp -o seq_masker_istat_oascii.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp -o seq_masker_ostat_opt_bin.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_obinary.cpp -o seq_masker_istat_obinary.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_cache_boost.cpp -o seq_masker_cache_boost.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_counts_converter.cpp -o win_mask_counts_converter.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_util.cpp: In member function 'virtual bool ncbi::CWinMaskUtil::CIdSet_TextMatch::find(const ncbi::objects::CBioseq_Handle&) const':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_util.cpp:130:45: warning: 'std::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::TGetTitleFlags)' is deprecated [-Wdeprecated-declarations]
130 | string id_str = sequence::GetTitle( bsh );
| ^
In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_util.cpp:37:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/objmgr/util/sequence.hpp:290:8: note: declared here
290 | string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0);
| ^~~~~~~~
mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_dup_table.cpp -o win_mask_dup_table.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp -o win_mask_gen_counts.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_util.cpp -o win_mask_util.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_config.cpp -o win_mask_config.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat.cpp -o seq_masker_istat.o
/bin/rm -f libxalgowinmask.a .libxalgowinmask.a.stamp
ar cr libxalgowinmask.a seq_masker.o seq_masker_score_mean.o seq_masker_score_mean_glob.o seq_masker_score_min.o seq_masker_util.o seq_masker_window.o seq_masker_window_ambig.o seq_masker_window_pattern.o seq_masker_window_pattern_ambig.o seq_masker_ostat_factory.o seq_masker_ostat.o seq_masker_ostat_ascii.o seq_masker_istat_ascii.o seq_masker_uset_simple.o seq_masker_istat_factory.o seq_masker_ostat_bin.o seq_masker_uset_array.o seq_masker_istat_bin.o seq_masker_ostat_opt.o seq_masker_ostat_opt_ascii.o seq_masker_uset_hash.o seq_masker_istat_oascii.o seq_masker_ostat_opt_bin.o seq_masker_istat_obinary.o seq_masker_cache_boost.o win_mask_counts_converter.o win_mask_dup_table.o win_mask_gen_counts.o win_mask_util.o win_mask_config.o seq_masker_istat.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgowinmask.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxalgowinmask.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxalgowinmask.a
/bin/ln -f .xalgowinmask.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xalgowinmask.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask'
/usr/pkg/bin/gmake -C sequence -j3 --jobserver-auth=fifo:/tmp//GMfifo2927 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/sequence'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/sequence'
/usr/pkg/bin/gmake -C blast -j3 --jobserver-auth=fifo:/tmp//GMfifo2927 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex_search/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blast_sra_input/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/gumbel_params/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex_search/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex_search/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blast_sra_input/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blast_sra_input/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/gumbel_params/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/gumbel_params/Makefile.in
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT blast_sra_input/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT dbindex_search/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT gumbel_params/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blast_sra_input/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex_search/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/gumbel_params/Makefile
/usr/pkg/bin/gmake -C composition_adjustment -j3 --jobserver-auth=fifo:/tmp//GMfifo15933 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -j3 --jobserver-auth=fifo:/tmp//GMfifo19781 export-headers
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -j3 --jobserver-auth=fifo:/tmp//GMfifo19781 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -j3 --jobserver-auth=fifo:/tmp//GMfifo19781 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/compo_heap.c:137:1: warning: 's_CompoHeapIsValid' defined but not used [-Wunused-function]
137 | s_CompoHeapIsValid(BlastCompo_HeapRecord * heapArray, int i, int n)
| ^~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c:200:1: warning: 's_DistinctAlignmentsLength' defined but not used [-Wunused-function]
200 | s_DistinctAlignmentsLength(BlastCompo_Alignment * list)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c:185:1: warning: 's_AlignmentsAreSorted' defined but not used [-Wunused-function]
185 | s_AlignmentsAreSorted(BlastCompo_Alignment * alignments)
| ^~~~~~~~~~~~~~~~~~~~~
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/compo_heap.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/composition_adjustment.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/smith_waterman.c.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/unified_pvalues.c.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/compo_heap.c -o compo_heap.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c -o compo_mode_condition.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/composition_adjustment.c -o composition_adjustment.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c -o matrix_frequency_data.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c -o nlm_linear_algebra.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c -o optimize_target_freq.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c -o redo_alignment.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/smith_waterman.c -o smith_waterman.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/unified_pvalues.c -o unified_pvalues.o
/bin/rm -f libcomposition_adjustment.a .libcomposition_adjustment.a.stamp
ar cr libcomposition_adjustment.a compo_heap.o compo_mode_condition.o composition_adjustment.o matrix_frequency_data.o nlm_linear_algebra.o optimize_target_freq.o redo_alignment.o smith_waterman.o unified_pvalues.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcomposition_adjustment.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libcomposition_adjustment.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libcomposition_adjustment.a
/bin/ln -f .composition_adjustment.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.composition_adjustment.dep
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment'
/usr/pkg/bin/gmake -C core -j3 --jobserver-auth=fifo:/tmp//GMfifo15933 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core TMPL=blast -j3 --jobserver-auth=fifo:/tmp//GMfifo13777 export-headers
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core TMPL=blast -j3 --jobserver-auth=fifo:/tmp//GMfifo13777 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core TMPL=blast -j3 --jobserver-auth=fifo:/tmp//GMfifo13777 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/aa_ungapped.c.
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/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/aa_ungapped.c -o aa_ungapped.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_diagnostics.c -o blast_diagnostics.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_engine.c -o blast_engine.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_extend.c -o blast_extend.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_filter.c -o blast_filter.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_gapalign.c -o blast_gapalign.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_hits.c -o blast_hits.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_hspstream.c -o blast_hspstream.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_itree.c -o blast_itree.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_kappa.c -o blast_kappa.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_kappa.c: In function 'Blast_RedoAlignmentCore_MT':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_kappa.c:3431:11: warning: unused variable 'my_stderr' [-Wunused-variable]
3431 | FILE *my_stderr = stderr;
| ^~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_kappa.c:3004:27: warning: unused variable 'forbidden' [-Wunused-variable]
3004 | Blast_ForbiddenRanges forbidden = {0,};
| ^~~~~~~~~
REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_lookup.c -o blast_lookup.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_aalookup.c -o blast_aalookup.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_aascan.c -o blast_aascan.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_nalookup.c -o blast_nalookup.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_nascan.c -o blast_nascan.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_message.c -o blast_message.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_options.c -o blast_options.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_psi.c -o blast_psi.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/na_ungapped.c -o na_ungapped.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_psi_priv.c -o blast_psi_priv.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_seg.c -o blast_seg.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -IIn file included from /usr/include/ctype.h:100,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/algo/blast/core/ncbi_std.h:44,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/algo/blast/core/blast_stat.h:38,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_stat.c:51:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_stat.c: In function 'BlastScoreBlkNucleotideMatrixRead':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_stat.c:1194:31: warning: array subscript has type 'char' [-Wchar-subscripts]
1194 | while( (*cp) && isspace(*cp) ) cp++;
| ^
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_stat.c:1201:35: warning: array subscript has type 'char' [-Wchar-subscripts]
1201 | while( (*cp) && isspace(*cp) ) cp++;
| ^
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_stat.c:1236:20: warning: array subscript has type 'char' [-Wchar-subscripts]
1236 | if ( isalpha(*cp) && !alphabet[0] ) {
| ^
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_stat.c:1246:26: warning: array subscript has type 'char' [-Wchar-subscripts]
1246 | }else if ( isalpha(*cp) ) {
| ^
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_stat.c:1250:33: warning: array subscript has type 'char' [-Wchar-subscripts]
1250 | while( (*cp) && isspace(*cp) ) cp++;
| ^
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_stat.c:1254:20: warning: array subscript has type 'char' [-Wchar-subscripts]
1254 | if ( isdigit(*cp) || *cp == '-' ) {
| ^
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_util.c: In function 'BlastProgram2Number':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_util.c:306:10: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
306 | else if (strcasecmp("mapper", program) == 0)
| ^~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_util.c:309:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
309 | return 0;
| ^~~~~~
/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_seqsrc.c -o blast_seqsrc.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_setup.c -o blast_setup.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_stat.c -o blast_stat.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_traceback.c -o blast_traceback.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_util.c -o blast_util.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/gapinfo.c -o gapinfo.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/greedy_align.c -o greedy_align.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/hspfilter_collector.c -o hspfilter_collector.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/hspfilter_besthit.c -o hspfilter_besthit.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/hspfilter_culling.c -o hspfilter_culling.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/link_hsps.c -o link_hsps.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/iIn file included from /usr/include/ctype.h:100,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/algo/blast/core/ncbi_std.h:44,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/algo/blast/core/phi_lookup.h:38,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/phi_lookup.c:35:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/phi_lookup.c: In function 's_MakePatternUpperCase':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/phi_lookup.c:379:53: warning: array subscript has type 'char' [-Wchar-subscripts]
379 | pattern_out[index] = toupper(pattern_in[index]);
| ^
nclude/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/lookup_util.c -o lookup_util.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/lookup_wrap.c -o lookup_wrap.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/matrix_freq_ratios.c -o matrix_freq_ratios.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/ncbi_std.c -o ncbi_std.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/ncbi_math.c -o ncbi_math.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_encoding.c -o blast_encoding.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/pattern.c -o pattern.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/phi_extend.c -o phi_extend.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/phi_gapalign.c -o phi_gapalign.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/phi_lookup.c -o phi_lookup.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_parameters.c -o blast_parameters.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_posit.c -o blast_posit.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_program.c -o blast_program.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_query_info.c -o blast_query_info.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_tune.c -o blast_tune.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_sw.c -o blast_sw.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_dynarray.c -o blast_dynarray.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/split_query.c -o split_query.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/gencode_singleton.c -o gencode_singleton.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/index_ungapped.c -o index_ungapped.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_traceback_mt_priv.c -o blast_traceback_mt_priv.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_hspstream_mt_utils.c -o blast_hspstream_mt_utils.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/boost_erf.c -o boost_erf.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/jumper.c -o jumper.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/hspfilter_mapper.c -o hspfilter_mapper.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/spliced_hits.c -o spliced_hits.o
/bin/rm -f libblast.a .libblast.a.stamp
ar cr libblast.a aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o blast_filter.o blast_gapalign.o blast_hits.o blast_hspstream.o blast_itree.o blast_kappa.o blast_lookup.o blast_aalookup.o blast_aascan.o blast_nalookup.o blast_nascan.o blast_message.o blast_options.o blast_psi.o na_ungapped.o blast_psi_priv.o blast_seg.o blast_seqsrc.o blast_setup.o blast_stat.o blast_traceback.o blast_util.o gapinfo.o greedy_align.o hspfilter_collector.o hspfilter_besthit.o hspfilter_culling.o link_hsps.o lookup_util.o lookup_wrap.o matrix_freq_ratios.o ncbi_std.o ncbi_math.o blast_encoding.o pattern.o phi_extend.o phi_gapalign.o phi_lookup.o blast_parameters.o blast_posit.o blast_program.o blast_query_info.o blast_tune.o blast_sw.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o blast_traceback_mt_priv.o blast_hspstream_mt_utils.o boost_erf.o jumper.o hspfilter_mapper.o spliced_hits.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libblast.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libblast.a
/bin/ln -f .blast.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.blast.dep
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core'
/usr/pkg/bin/gmake -C dbindex -j3 --jobserver-auth=fifo:/tmp//GMfifo15933 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -j3 --jobserver-auth=fifo:/tmp//GMfifo2367 export-headers
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -j3 --jobserver-auth=fifo:/tmp//GMfifo2367 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -j3 --jobserver-auth=fifo:/tmp//GMfifo2367 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex.cpp: In function 'const ncbi::blastdbindex::SIndexHeader ncbi::blastdbindex::ReadIndexHeader(void*) [with bool LEGACY = true]':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex.cpp:306:19: warning: variable 'tmp' set but not used [-Wunused-but-set-variable]
306 | unsigned long tmp;
| ^~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:52:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations]
52 | objects::CFastaReader::fAllSeqIds;
| ^~~~~~~~~~
In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:35:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here
92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note)
| ^~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:52:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations]
52 | objects::CFastaReader::fAllSeqIds;
| ^~~~~~~~~~
In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:35:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here
92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note)
| ^~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp: In member function 'std::string ncbi::blastdbindex::CSubjectMap_Factory_Base::extractSeqVector(ncbi::blastdbindex::CSubjectMap_Factory_Base::TSeqData&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:658:53: warning: 'std::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::TGetTitleFlags)' is deprecated [-Wdeprecated-declarations]
658 | string idstr = objects::sequence::GetTitle( bsh );
| ^
In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:42:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/objmgr/util/sequence.hpp:290:8: note: declared here
290 | string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0);
| ^~~~~~~~
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex_search.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp -o sequence_istream_fasta.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp -o sequence_istream_bdb.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex.cpp -o dbindex.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp -o dbindex_factory.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex_search.cpp -o dbindex_search.o
/bin/rm -f libxalgoblastdbindex.a .libxalgoblastdbindex.a.stamp
ar cr libxalgoblastdbindex.a sequence_istream_fasta.o sequence_istream_bdb.o dbindex.o dbindex_factory.o dbindex_search.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgoblastdbindex.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxalgoblastdbindex.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxalgoblastdbindex.a
/bin/ln -f .xalgoblastdbindex.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xalgoblastdbindex.dep
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex'
/usr/pkg/bin/gmake -C makeindex -j3 --jobserver-auth=fifo:/tmp//GMfifo2367 all_r || exit 5
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/makeindex TMPL=makeindex -j3 --jobserver-auth=fifo:/tmp//GMfifo6489 flag-stamps
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex'
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/makeindex TMPL=makeindex -j3 --jobserver-auth=fifo:/tmp//GMfifo6489 all
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/makeindex/main.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=makembindex -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/makeindex/main.cpp -o main.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=makembindex -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp -o mkindex_app.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 main.o mkindex_app.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lxalgoblastdbindex-static -lblast-static -lcomposition_adjustment-static -lseqdb-static -lblastdb-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxobjutil-static -ltables-static -lconnect-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -lpthread -o makembindex
strip makembindex
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f makembindex /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin
/bin/ln -f makembindex /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/makembindex
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex'
/usr/pkg/bin/gmake -C dbindex_search -j3 --jobserver-auth=fifo:/tmp//GMfifo15933 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex_search'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex_search'
/usr/pkg/bin/gmake -C api -j3 --jobserver-auth=fifo:/tmp//GMfifo15933 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api TMPL=xblast -j3 --jobserver-auth=fifo:/tmp//GMfifo20435 export-headers
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api TMPL=xblast -j3 --jobserver-auth=fifo:/tmp//GMfifo20435 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api TMPL=xblast -j3 --jobserver-auth=fifo:/tmp//GMfifo20435 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api'
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/aa_ungapped.c"' > .core_aa_ungapped.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_diagnostics.c"' > .core_blast_diagnostics.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_engine.c"' > .core_blast_engine.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_extend.c"' > .core_blast_extend.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_filter.c"' > .core_blast_filter.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_gapalign.c"' > .core_blast_gapalign.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_hits.c"' > .core_blast_hits.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_hspstream.c"' > .core_blast_hspstream.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_itree.c"' > .core_blast_itree.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_kappa.c"' > .core_blast_kappa.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_lookup.c"' > .core_blast_lookup.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_aalookup.c"' > .core_blast_aalookup.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_aascan.c"' > .core_blast_aascan.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_nalookup.c"' > .core_blast_nalookup.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_nascan.c"' > .core_blast_nascan.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_message.c"' > .core_blast_message.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_options.c"' > .core_blast_options.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_psi.c"' > .core_blast_psi.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/na_ungapped.c"' > .core_na_ungapped.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_psi_priv.c"' > .core_blast_psi_priv.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_seg.c"' > .core_blast_seg.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_seqsrc.c"' > .core_blast_seqsrc.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_setup.c"' > .core_blast_setup.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_stat.c"' > .core_blast_stat.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_traceback.c"' > .core_blast_traceback.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_util.c"' > .core_blast_util.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/gapinfo.c"' > .core_gapinfo.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/greedy_align.c"' > .core_greedy_align.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/hspfilter_collector.c"' > .core_hspfilter_collector.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/hspfilter_besthit.c"' > .core_hspfilter_besthit.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/hspfilter_culling.c"' > .core_hspfilter_culling.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/link_hsps.c"' > .core_link_hsps.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/lookup_util.c"' > .core_lookup_util.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/lookup_wrap.c"' > .core_lookup_wrap.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/matrix_freq_ratios.c"' > .core_matrix_freq_ratios.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/ncbi_std.c"' > .core_ncbi_std.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/ncbi_math.c"' > .core_ncbi_math.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_encoding.c"' > .core_blast_encoding.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/pattern.c"' > .core_pattern.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/phi_extend.c"' > .core_phi_extend.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/phi_gapalign.c"' > .core_phi_gapalign.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/phi_lookup.c"' > .core_phi_lookup.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_parameters.c"' > .core_blast_parameters.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_posit.c"' > .core_blast_posit.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_program.c"' > .core_blast_program.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_query_info.c"' > .core_blast_query_info.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_tune.c"' > .core_blast_tune.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_sw.c"' > .core_blast_sw.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_dynarray.c"' > .core_blast_dynarray.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/split_query.c"' > .core_split_query.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/gencode_singleton.c"' > .core_gencode_singleton.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/index_ungapped.c"' > .core_index_ungapped.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_traceback_mt_priv.c"' > .core_blast_traceback_mt_priv.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_hspstream_mt_utils.c"' > .core_blast_hspstream_mt_utils.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/boost_erf.c"' > .core_boost_erf.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/jumper.c"' > .core_jumper.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/hspfilter_mapper.c"' > .core_hspfilter_mapper.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/spliced_hits.c"' > .core_spliced_hits.c
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_cxx.cpp.
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rm .core_blast_dynarray.c .core_blast_util.c .core_boost_erf.c .core_blast_posit.c .core_hspfilter_mapper.c .core_blast_itree.c .core_hspfilter_culling.c .core_blast_program.c .core_ncbi_std.c .core_ncbi_math.c .core_blast_traceback.c .core_blast_stat.c .core_blast_seqsrc.c .core_blast_setup.c .core_index_ungapped.c .core_link_hsps.c .core_blast_engine.c .core_pattern.c .core_blast_filter.c .core_greedy_align.c .core_lookup_wrap.c .core_lookup_util.c .core_hspfilter_besthit.c .core_gencode_singleton.c .core_gapinfo.c .core_spliced_hits.c .core_blast_psi.c .core_blast_hits.c .core_blast_kappa.c .core_blast_message.c .core_blast_parameters.c .core_matrix_freq_ratios.c .core_hspfilter_collector.c .core_aa_ungapped.c .core_blast_traceback_mt_priv.c .core_blast_hspstream_mt_utils.c .core_blast_aascan.c .core_blast_lookup.c .core_blast_diagnostics.c .core_phi_lookup.c .core_blast_nascan.c .core_blast_hspstream.c .core_blast_query_info.c .core_blast_gapalign.c .core_na_ungapped.c .core_blast_seg.c .core_phi_extend.c .core_blast_nalookup.c .core_split_query.c .core_blast_sw.c .core_blast_encoding.c .core_blast_tune.c .core_blast_psi_priv.c .core_jumper.c .core_blast_options.c .core_blast_aalookup.c .core_blast_extend.c .core_phi_gapalign.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/aa_ungapped.c"' > .core_aa_ungapped.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_diagnostics.c"' > .core_blast_diagnostics.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_engine.c"' > .core_blast_engine.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_extend.c"' > .core_blast_extend.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_filter.c"' > .core_blast_filter.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_gapalign.c"' > .core_blast_gapalign.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_hits.c"' > .core_blast_hits.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_hspstream.c"' > .core_blast_hspstream.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_itree.c"' > .core_blast_itree.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_kappa.c"' > .core_blast_kappa.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_lookup.c"' > .core_blast_lookup.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_aalookup.c"' > .core_blast_aalookup.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_aascan.c"' > .core_blast_aascan.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_nalookup.c"' > .core_blast_nalookup.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_nascan.c"' > .core_blast_nascan.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_message.c"' > .core_blast_message.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_options.c"' > .core_blast_options.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_psi.c"' > .core_blast_psi.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/na_ungapped.c"' > .core_na_ungapped.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_psi_priv.c"' > .core_blast_psi_priv.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_seg.c"' > .core_blast_seg.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_seqsrc.c"' > .core_blast_seqsrc.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_setup.c"' > .core_blast_setup.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_stat.c"' > .core_blast_stat.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_traceback.c"' > .core_blast_traceback.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_util.c"' > .core_blast_util.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/gapinfo.c"' > .core_gapinfo.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/greedy_align.c"' > .core_greedy_align.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/hspfilter_collector.c"' > .core_hspfilter_collector.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/hspfilter_besthit.c"' > .core_hspfilter_besthit.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/hspfilter_culling.c"' > .core_hspfilter_culling.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/link_hsps.c"' > .core_link_hsps.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/lookup_util.c"' > .core_lookup_util.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/lookup_wrap.c"' > .core_lookup_wrap.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/matrix_freq_ratios.c"' > .core_matrix_freq_ratios.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/ncbi_std.c"' > .core_ncbi_std.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/ncbi_math.c"' > .core_ncbi_math.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_encoding.c"' > .core_blast_encoding.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/pattern.c"' > .core_pattern.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/phi_extend.c"' > .core_phi_extend.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/phi_gapalign.c"' > .core_phi_gapalign.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/phi_lookup.c"' > .core_phi_lookup.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_parameters.c"' > .core_blast_parameters.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_posit.c"' > .core_blast_posit.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_program.c"' > .core_blast_program.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_query_info.c"' > .core_blast_query_info.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_tune.c"' > .core_blast_tune.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_sw.c"' > .core_blast_sw.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_dynarray.c"' > .core_blast_dynarray.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/split_query.c"' > .core_split_query.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/gencode_singleton.c"' > .core_gencode_singleton.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp: In member function 'char* ncbi::blast::CBlastOptionsHandle::GetFilterString() const':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp:100:36: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations]
100 | return m_Opts->GetFilterString(); /* NCBI_FAKE_WARNING */
| ^
In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp:36:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here
178 | NCBI_DEPRECATED char* GetFilterString() const;
| ^~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp: In member function 'void ncbi::blast::CBlastOptionsHandle::SetFilterString(const char*, bool)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp:106:37: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations]
106 | m_Opts->SetFilterString(f, clear); /* NCBI_FAKE_WARNING */
| ^
In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp:36:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here
180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true);
| ^~~~~~~~~~~~~~~
.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/index_ungapped.c"' > .core_index_ungapped.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_traceback_mt_priv.c"' > .core_blast_traceback_mt_priv.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_hspstream_mt_utils.c"' > .core_blast_hspstream_mt_utils.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/boost_erf.c"' > .core_boost_erf.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/jumper.c"' > .core_jumper.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/hspfilter_mapper.c"' > .core_hspfilter_mapper.c
echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/spliced_hits.c"' > .core_spliced_hits.c
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_aux.cpp -o blast_aux.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_cxx.cpp -o blast_options_cxx.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp -o blast_options_local_priv.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_builder.cpp -o blast_options_builder.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_setup_cxx.cpp -o blast_setup_cxx.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_seqalign.cpp -o blast_seqalign.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp -o blast_options_handle.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_nucl_options.cpp -o blast_nucl_options.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/disc_nucl_options.cpp -o disc_nucl_options.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_prot_options.cpp -o blast_prot_options.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psiblast_options.cpp -o psiblast_options.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_rps_options.cpp -o blast_rps_options.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blastx_options.cpp -o blastx_options.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/tblastx_options.cpp -o tblastx_options.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/tblastn_options.cpp -o tblastn_options.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/rpstblastn_options.cpp -o rpstblastn_options.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/phiblast_nucl_options.cpp -o phiblast_nucl_options.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/phiblast_prot_options.cpp -o phiblast_prot_options.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/pssm_engine.cpp -o pssm_engine.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/loc/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/remote_blast.cpp: In member function 'bool ncbi::blast::CRemoteBlast::LoadFromArchive()':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/remote_blast.cpp:1660:19: warning: ignoring return value of 'bool std::vector<_Tp, _Alloc>::empty() const [with _Tp = std::__cxx11::basic_string<char>; _Alloc = std::allocator<std::__cxx11::basic_string<char> >]', declared with attribute 'nodiscard' [-Wunused-result]
1660 | m_Errs.empty();
| ~~~~~~~~~~~~^~
In file included from /usr/include/g++/vector:67,
from /usr/include/g++/functional:62,
from /usr/include/g++/pstl/glue_algorithm_defs.h:13,
from /usr/include/g++/algorithm:74,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbistl.hpp:180,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbi_limits.hpp:61,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbistr.hpp:38,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbistd.hpp:37,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbitime.hpp:65,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbi_system.hpp:36,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/remote_blast.cpp:35:
/usr/include/g++/bits/stl_vector.h:1007:7: note: declared here
1007 | empty() const _GLIBCXX_NOEXCEPT
| ^~~~~
al_blast.cpp -o local_blast.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/remote_blast.cpp -o remote_blast.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp -o seqinfosrc_seqvec.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp -o seqinfosrc_seqdb.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp -o seqinfosrc_bioseq.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqsrc_multiseq.cpp -o seqsrc_multiseq.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqsrc_seqdb.cpp -o seqsrc_seqdb.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqsrc_query_factory.cpp -o seqsrc_query_factory.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/bl2seq.cpp -o bl2seq.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_objmgr_tools.cpp -o blast_objmgr_tools.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/repeats_filter_cxx.cpp -o repeats_filter_cxx.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-bla/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/msa_pssm_input.cpp: In member function 'void ncbi::blast::CPsiBlastInputClustalW::x_ReadAsciiMsa(ncbi::CNcbiIstream&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/msa_pssm_input.cpp:125:32: warning: 'void ncbi::CAlnReader::Read(bool, bool, ncbi::objects::ILineErrorListener*)' is deprecated [-Wdeprecated-declarations]
125 | reader.Read(false, true);
| ^
In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/msa_pssm_input.cpp:42:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/aln_reader.hpp:215:10: note: declared here
215 | void Read(
| ^~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/msa_pssm_input.cpp: In member function 'void ncbi::blast::CPsiBlastInputClustalW::x_ExtractAlignmentData()':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/msa_pssm_input.cpp:376:22: warning: comparison of integer expressions of different signedness: 'int' and 'Uint4' {aka 'unsigned int'} [-Wsign-compare]
376 | while (k < m_Msa->dimensions->query_length &&
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
st+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_mtlock.cpp -o blast_mtlock.o
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/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/remote_search.cpp -o remote_search.o
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/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/objmgr_query_data.cpp -o objmgr_query_data.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/objmgrfree_query_data.cpp -o objmgrfree_query_data.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp -o bioseq_extract_data_priv.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/effsearchspace_calc.cpp -o effsearchspace_calc.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp -o blast_seqinfosrc_aux.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_dbindex.cpp -o blast_dbindex.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/split_query_cxx.cpp -o split_query_cxx.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/split_query_aux_priv.cpp -o split_query_aux_priv.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/split_query_blk.cpp -o split_query_blk.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/winmask_filter.cpp -o winmask_filter.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/subj_ranges_set.cpp -o subj_ranges_set.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/rpsblast_local.cpp -o rpsblast_local.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seedtop.cpp -o seedtop.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/cdd_pssm_input.cpp -o cdd_pssm_input.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/deltablast_options.cpp -o deltablast_options.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/deltablast.cpp -o deltablast.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/magicblast_options.cpp -o magicblast_options.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/magicblast.cpp -o magicblast.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_node.cpp -o blast_node.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/In file included from .core_blast_kappa.c:1:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_kappa.c: In function 'Blast_RedoAlignmentCore_MT':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_kappa.c:3431:11: warning: unused variable 'my_stderr' [-Wunused-variable]
3431 | FILE *my_stderr = stderr;
| ^~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_kappa.c:3004:27: warning: unused variable 'forbidden' [-Wunused-variable]
3004 | Blast_ForbiddenRanges forbidden = {0,};
| ^~~~~~~~~
biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_usage_report.cpp -o blast_usage_report.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 .core_aa_ungapped.c -o .core_aa_ungapped.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 .core_blast_diagnostics.c -o .core_blast_diagnostics.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 .core_blast_engine.c -o .core_blast_engine.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 .core_blast_extend.c -o .core_blast_extend.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 .core_blast_filter.c -o .core_blast_filter.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 .core_blast_gapalign.c -o .core_blast_gapalign.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 .core_blast_hits.c -o .core_blast_hits.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 .core_blast_hspstream.c -o .core_blast_hspstream.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 .core_blast_itree.c -o .core_blast_itree.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 .core_blast_kappa.c -o .core_blast_kappa.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 .core_blast_lookup.c -o .core_blast_lookup.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 .core_blast_aalookup.c -o .core_blast_aalookup.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 .core_blast_aascan.c -o .core_blast_aascan.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 .core_blast_nalookup.c -o .core_blast_nalookup.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 .core_blast_nascan.c -o .core_blast_nascan.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 .core_blast_message.c -o .core_blast_message.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 .core_blast_options.c -o .core_blast_options.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 .core_blast_psi.c -o .core_blast_psi.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 .core_na_ungapped.c -o .core_na_ungapped.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 .core_blast_psi_priv.c -o .core_blast_psi_priv.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 .core_blast_seg.c -o .core_blast_seg.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 .core_blast_seqsrc.c -o .core_blast_seqsrc.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 .core_blast_setup.c -o .core_blast_setup.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/In file included from /usr/include/ctype.h:100,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/algo/blast/core/ncbi_std.h:44,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/algo/blast/core/blast_stat.h:38,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_stat.c:51,
from .core_blast_stat.c:1:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_stat.c: In function 'BlastScoreBlkNucleotideMatrixRead':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_stat.c:1194:31: warning: array subscript has type 'char' [-Wchar-subscripts]
1194 | while( (*cp) && isspace(*cp) ) cp++;
| ^
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_stat.c:1201:35: warning: array subscript has type 'char' [-Wchar-subscripts]
1201 | while( (*cp) && isspace(*cp) ) cp++;
| ^
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_stat.c:1236:20: warning: array subscript has type 'char' [-Wchar-subscripts]
1236 | if ( isalpha(*cp) && !alphabet[0] ) {
| ^
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_stat.c:1246:26: warning: array subscript has type 'char' [-Wchar-subscripts]
1246 | }else if ( isalpha(*cp) ) {
| ^
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_stat.c:1250:33: warning: array subscript has type 'char' [-Wchar-subscripts]
1250 | while( (*cp) && isspace(*cp) ) cp++;
| ^
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_stat.c:1254:20: warning: array subscript has type 'char' [-Wchar-subscripts]
1254 | if ( isdigit(*cp) || *cp == '-' ) {
| ^
In file included from .core_blast_util.c:1:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_util.c: In function 'BlastProgram2Number':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_util.c:306:10: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
306 | else if (strcasecmp("mapper", program) == 0)
| ^~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_util.c:309:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
309 | return 0;
| ^~~~~~
include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 .core_blast_stat.c -o .core_blast_stat.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 .core_blast_traceback.c -o .core_blast_traceback.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 .core_blast_util.c -o .core_blast_util.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 .core_gapinfo.c -o .core_gapinfo.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 .core_greedy_align.c -o .core_greedy_align.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 .core_hspfilter_collector.c -o .core_hspfilter_collector.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 .core_hspfilter_besthit.c -o .core_hspfilter_besthit.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 .core_hspfilter_culling.c -o .core_hspfilter_culling.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 .core_link_hsps.c -o .core_link_hsps.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 .core_lookup_util.c -o .core_lookup_util.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 .core_lookup_wrap.c -o .core_lookup_wrap.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 .core_matrix_freq_ratios.c -o .core_matrix_freq_ratios.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/In file included from /usr/include/ctype.h:100,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/algo/blast/core/ncbi_std.h:44,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/algo/blast/core/phi_lookup.h:38,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/phi_lookup.c:35,
from .core_phi_lookup.c:1:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/phi_lookup.c: In function 's_MakePatternUpperCase':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/phi_lookup.c:379:53: warning: array subscript has type 'char' [-Wchar-subscripts]
379 | pattern_out[index] = toupper(pattern_in[index]);
| ^
bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 .core_ncbi_std.c -o .core_ncbi_std.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 .core_ncbi_math.c -o .core_ncbi_math.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 .core_blast_encoding.c -o .core_blast_encoding.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 .core_pattern.c -o .core_pattern.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 .core_phi_extend.c -o .core_phi_extend.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 .core_phi_gapalign.c -o .core_phi_gapalign.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 .core_phi_lookup.c -o .core_phi_lookup.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 .core_blast_parameters.c -o .core_blast_parameters.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 .core_blast_posit.c -o .core_blast_posit.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 .core_blast_program.c -o .core_blast_program.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 .core_blast_query_info.c -o .core_blast_query_info.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 .core_blast_tune.c -o .core_blast_tune.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 .core_blast_sw.c -o .core_blast_sw.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 .core_blast_dynarray.c -o .core_blast_dynarray.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 .core_split_query.c -o .core_split_query.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 .core_gencode_singleton.c -o .core_gencode_singleton.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 .core_index_ungapped.c -o .core_index_ungapped.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 .core_blast_traceback_mt_priv.c -o .core_blast_traceback_mt_priv.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 .core_blast_hspstream_mt_utils.c -o .core_blast_hspstream_mt_utils.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 .core_boost_erf.c -o .core_boost_erf.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 .core_jumper.c -o .core_jumper.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 .core_hspfilter_mapper.c -o .core_hspfilter_mapper.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 .core_spliced_hits.c -o .core_spliced_hits.o
/bin/rm -f libxblast.a .libxblast.a.stamp
ar cr libxblast.a .core_aa_ungapped.o .core_blast_diagnostics.o .core_blast_engine.o .core_blast_extend.o .core_blast_filter.o .core_blast_gapalign.o .core_blast_hits.o .core_blast_hspstream.o .core_blast_itree.o .core_blast_kappa.o .core_blast_lookup.o .core_blast_aalookup.o .core_blast_aascan.o .core_blast_nalookup.o .core_blast_nascan.o .core_blast_message.o .core_blast_options.o .core_blast_psi.o .core_na_ungapped.o .core_blast_psi_priv.o .core_blast_seg.o .core_blast_seqsrc.o .core_blast_setup.o .core_blast_stat.o .core_blast_traceback.o .core_blast_util.o .core_gapinfo.o .core_greedy_align.o .core_hspfilter_collector.o .core_hspfilter_besthit.o .core_hspfilter_culling.o .core_link_hsps.o .core_lookup_util.o .core_lookup_wrap.o .core_matrix_freq_ratios.o .core_ncbi_std.o .core_ncbi_math.o .core_blast_encoding.o .core_pattern.o .core_phi_extend.o .core_phi_gapalign.o .core_phi_lookup.o .core_blast_parameters.o .core_blast_posit.o .core_blast_program.o .core_blast_query_info.o .core_blast_tune.o .core_blast_sw.o .core_blast_dynarray.o .core_split_query.o .core_gencode_singleton.o .core_index_ungapped.o .core_blast_traceback_mt_priv.o .core_blast_hspstream_mt_utils.o .core_boost_erf.o .core_jumper.o .core_hspfilter_mapper.o .core_spliced_hits.o blast_aux.o blast_options_cxx.o blast_options_local_priv.o blast_options_builder.o blast_setup_cxx.o blast_seqalign.o blast_options_handle.o blast_nucl_options.o disc_nucl_options.o blast_prot_options.o psiblast_options.o blast_rps_options.o blastx_options.o tblastx_options.o tblastn_options.o rpstblastn_options.o phiblast_nucl_options.o phiblast_prot_options.o pssm_engine.o local_blast.o remote_blast.o seqinfosrc_seqvec.o seqinfosrc_seqdb.o seqinfosrc_bioseq.o seqsrc_multiseq.o seqsrc_seqdb.o seqsrc_query_factory.o bl2seq.o blast_objmgr_tools.o repeats_filter_cxx.o blast_mtlock.o psibl2seq.o local_db_adapter.o psiblast.o psiblast_impl.o psiblast_iteration.o psi_pssm_input.o msa_pssm_input.o psiblast_aux_priv.o blast_aux_priv.o blast_advprot_options.o blastp_kmer_options.o version.o dust_filter.o rps_aux.o search_strategy.o setup_factory.o prelim_stage.o traceback_stage.o uniform_search.o local_search.o blast_results.o remote_search.o query_data.o objmgr_query_data.o objmgrfree_query_data.o bioseq_extract_data_priv.o effsearchspace_calc.o blast_seqinfosrc_aux.o blast_dbindex.o split_query_cxx.o split_query_aux_priv.o split_query_blk.o winmask_filter.o subj_ranges_set.o rpsblast_local.o seedtop.o cdd_pssm_input.o deltablast_options.o deltablast.o magicblast_options.o magicblast.o blast_node.o blast_usage_report.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblast.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxblast.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxblast.a
/bin/ln -f .xblast.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xblast.dep
rm .core_blast_dynarray.c .core_blast_itree.c .core_boost_erf.c .core_blast_seqsrc.c .core_ncbi_math.c .core_index_ungapped.c .core_blast_engine.c .core_blast_filter.c .core_lookup_wrap.c .core_hspfilter_besthit.c .core_gencode_singleton.c .core_gapinfo.c .core_spliced_hits.c .core_blast_psi.c .core_blast_hspstream_mt_utils.c .core_blast_diagnostics.c .core_blast_hspstream.c .core_blast_lookup.c .core_blast_nascan.c .core_na_ungapped.c .core_phi_extend.c .core_blast_nalookup.c .core_blast_encoding.c .core_blast_psi_priv.c .core_jumper.c .core_blast_aalookup.c .core_blast_util.c .core_blast_posit.c .core_hspfilter_mapper.c .core_hspfilter_culling.c .core_blast_program.c .core_ncbi_std.c .core_blast_traceback.c .core_blast_stat.c .core_blast_setup.c .core_link_hsps.c .core_pattern.c .core_greedy_align.c .core_lookup_util.c .core_blast_hits.c .core_blast_kappa.c .core_blast_message.c .core_blast_parameters.c .core_matrix_freq_ratios.c .core_hspfilter_collector.c .core_aa_ungapped.c .core_blast_traceback_mt_priv.c .core_blast_aascan.c .core_phi_lookup.c .core_blast_query_info.c .core_blast_gapalign.c .core_blast_seg.c .core_split_query.c .core_blast_sw.c .core_blast_tune.c .core_blast_options.c .core_blast_extend.c .core_phi_gapalign.c
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api'
/usr/pkg/bin/gmake -C proteinkmer -j3 --jobserver-auth=fifo:/tmp//GMfifo15933 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer TMPL=proteinkmer -j3 --jobserver-auth=fifo:/tmp//GMfifo18596 export-headers
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer TMPL=proteinkmer -j3 --jobserver-auth=fifo:/tmp//GMfifo18596 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer TMPL=proteinkmer -j3 --jobserver-auth=fifo:/tmp//GMfifo18596 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp: In function 'void ncbi::neighbor_query(const std::vector<std::vector<unsigned int> >&, const uint64_t*, std::vector<std::set<unsigned int> >&, ncbi::blast::CMinHashFile&, int, int, double, ncbi::TBlastKmerPrelimScoreVector&, ncbi::BlastKmerStats&, int)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:806:17: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
806 | if (last_oid == *i)
| ~~~~~~~~~^~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp: In member function 'void ncbi::blast::CMinHashFile::GetMinHits(int, int&, std::vector<unsigned int>&) const':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp:77:18: warning: comparison of integer expressions of different signedness: 'std::vector<unsigned int>::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
77 | if (hits.size() < numHashes)
| ~~~~~~~~~~~~^~~~~~~~~~~
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmer.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmeroptions.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/pearson.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/kblastapi.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmer.cpp -o blastkmer.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp -o blastkmerindex.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmeroptions.cpp -o blastkmeroptions.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp -o blastkmerresults.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp -o blastkmerutils.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp -o mhfile.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/pearson.cpp -o pearson.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/kblastapi.cpp -o kblastapi.o
/bin/rm -f libproteinkmer.a .libproteinkmer.a.stamp
ar cr libproteinkmer.a blastkmer.o blastkmerindex.o blastkmeroptions.o blastkmerresults.o blastkmerutils.o mhfile.o pearson.o kblastapi.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libproteinkmer.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libproteinkmer.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libproteinkmer.a
/bin/ln -f .proteinkmer.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.proteinkmer.dep
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer'
/usr/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/tmp//GMfifo18596 all_r || exit 5
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: *** No rule to make target '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test'
NOTE: skipping project "proteinkmer_unit_test" due to unmet requirements
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: *** No rule to make target '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test'
NOTE: skipping project "proteinkmer_unit_test" due to unmet requirements
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer'
/usr/pkg/bin/gmake -C format -j3 --jobserver-auth=fifo:/tmp//GMfifo15933 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format TMPL=xblastformat -j3 --jobserver-auth=fifo:/tmp//GMfifo21772 export-headers
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format TMPL=xblastformat -j3 --jobserver-auth=fifo:/tmp//GMfifo21772 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format TMPL=xblastformat -j3 --jobserver-auth=fifo:/tmp//GMfifo21772 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastxml_format.cpp: In function 'void ncbi::s_SeqAlignSetToXMLHits(std::__cxx11::list<ncbi::CRef<ncbi::objects::CHit> >&, const ncbi::objects::CSeq_align_set&, ncbi::objects::CScope*, const ncbi::CBlastFormattingMatrix*, const ncbi::TMaskedQueryRegions*, bool, int, int, ncbi::CNcbiOstream*)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastxml_format.cpp:501:88: warning: 'ncbi::CObjectOStreamXml::CObjectOStreamXml(ncbi::CNcbiOstream&, bool)' is deprecated [-Wdeprecated-declarations]
501 | unique_ptr<CObjectOStreamXml> xml_one_hit_os (new CObjectOStreamXml (one_hit_os,false));
| ^
In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiexpt.hpp:42,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/corelib/tempstr.hpp:38,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbistr.hpp:39,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbistd.hpp:37,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbicntr.hpp:40,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiobj.hpp:39,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/objmgr/object_manager.hpp:45,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastxml_format.cpp:34:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/serial/objostrxml.hpp:66:26: note: declared here
66 | NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut));
| ^~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbimisc.hpp:1209:38: note: in definition of macro 'NCBI_DEPRECATED_CTOR'
1209 | # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED
| ^~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastxml_format.cpp: In function 'bool ncbi::s_SerializeAndSplitBy(const ncbi::CSerialObject&, const char*, std::string&, std::string&, bool, bool)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastxml_format.cpp:785:91: warning: 'ncbi::CObjectOStreamXml::CObjectOStreamXml(ncbi::CNcbiOstream&, bool)' is deprecated [-Wdeprecated-declarations]
785 | unique_ptr<CObjectOStreamXml> xml_one_iter_os(new CObjectOStreamXml (one_iter_ss_os,false));
| ^
In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiexpt.hpp:42,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/corelib/tempstr.hpp:38,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbistr.hpp:39,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbistd.hpp:37,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbicntr.hpp:40,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiobj.hpp:39,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/objmgr/object_manager.hpp:45,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastxml_format.cpp:34:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/serial/objostrxml.hpp:66:26: note: declared here
66 | NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut));
| ^~~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbimisc.hpp:1209:38: note: in definition of macro 'NCBI_DEPRECATED_CTOR'
1209 | # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED
| ^~~~
In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/data4xmlformat.cpp:37:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/data4xmlformat.hpp: In member function 'virtual std::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/data4xmlformat.hpp:155:39: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations]
155 | m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */
| ^
In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/uniform_search.hpp:42,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/data4xmlformat.hpp:42,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/data4xmlformat.cpp:37:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here
178 | NCBI_DEPRECATED char* GetFilterString() const;
| ^~~~~~~~~~~~~~~
In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/data4xml2format.cpp:36:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/data4xml2format.hpp: In member function 'virtual std::string ncbi::CCmdLineBlastXML2ReportData::GetFilterString() const':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/data4xml2format.hpp:140:40: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations]
140 | m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */
| ^
In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/uniform_search.hpp:42,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/data4xml2format.hpp:42,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/data4xml2format.cpp:36:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here
178 | NCBI_DEPRECATED char* GetFilterString() const;
| ^~~~~~~~~~~~~~~
In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blast_format.cpp:49:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/data4xmlformat.hpp: In member function 'virtual std::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/data4xmlformat.hpp:155:39: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations]
155 | m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */
| ^
In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/uniform_search.hpp:42,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:42,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blast_format.cpp:37:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here
178 | NCBI_DEPRECATED char* GetFilterString() const;
| ^~~~~~~~~~~~~~~
In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blast_format.cpp:51:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/data4xml2format.hpp: In member function 'virtual std::string ncbi::CCmdLineBlastXML2ReportData::GetFilterString() const':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/data4xml2format.hpp:140:40: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations]
140 | m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */
| ^
In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/uniform_search.hpp:42,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:42,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blast_format.cpp:37:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here
178 | NCBI_DEPRECATED char* GetFilterString() const;
| ^~~~~~~~~~~~~~~
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastfmtutil.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastxml2_format.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastxml_format.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blast_format.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/data4xmlformat.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/data4xml2format.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/build_archive.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/vecscreen_run.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/sam.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blast_async_format.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastfmtutil.cpp -o blastfmtutil.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastxml_format.cpp -o blastxml_format.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastxml2_format.cpp -o blastxml2_format.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blast_format.cpp -o blast_format.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/data4xmlformat.cpp -o data4xmlformat.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/data4xml2format.cpp -o data4xml2format.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/build_archive.cpp -o build_archive.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/vecscreen_run.cpp -o vecscreen_run.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/t/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blast_async_format.cpp: In member function 'virtual void* CBlastAsyncFormatThread::Main()':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blast_async_format.cpp:122:28: warning: comparison of integer expressions of different signedness: 'std::map<int, std::vector<SFormatResultValues> >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
122 | if (m_ResultsMap.size() != currNum)
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
mp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/sam.cpp -o sam.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blast_async_format.cpp -o blast_async_format.o
/bin/rm -f libxblastformat.a .libxblastformat.a.stamp
ar cr libxblastformat.a blastfmtutil.o blastxml_format.o blastxml2_format.o blast_format.o data4xmlformat.o data4xml2format.o build_archive.o vecscreen_run.o sam.o blast_async_format.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblastformat.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxblastformat.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxblastformat.a
/bin/ln -f .xblastformat.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xblastformat.dep
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format'
/usr/pkg/bin/gmake -C blastinput -j3 --jobserver-auth=fifo:/tmp//GMfifo15933 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/demo/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/demo/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/demo/Makefile.in
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT demo/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/demo/Makefile
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput TMPL=blastinput -j3 --jobserver-auth=fifo:/tmp//GMfifo17789 export-headers
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput TMPL=blastinput -j3 --jobserver-auth=fifo:/tmp//GMfifo17789 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput TMPL=blastinput -j3 --jobserver-auth=fifo:/tmp//GMfifo17789 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_input.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_args.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/cmdline_flags.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blastp_args.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blastn_args.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blastx_args.cpp.
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/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_input.cpp -o blast_input.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp -o blast_fasta_input.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp -o blast_scope_src.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_args.cpp -o blast_args.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/cmdline_flags.cpp -o cmdline_flags.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp -o blast_input_aux.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blastp_args.cpp -o blastp_args.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blastn_args.cpp -o blastn_args.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp -o rmblastn_args.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blastx_args.cpp -o blastx_args.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp -o tblastn_args.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp -o tblastx_args.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp -o psiblast_args.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp -o rpsblast_args.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp -o rpstblastn_args.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/igblastn_args.cpp -o igblastn_args.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp -o igblastp_args.o
/tmp/pkgbui/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp: In constructor 'ncbi::blast::CIgBlastpAppArgs::CIgBlastpAppArgs()':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp:67:16: warning: unused variable 'kFilterByDefault' [-Wunused-variable]
67 | const bool kFilterByDefault = false;
| ^~~~~~~~~~~~~~~~
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp: In member function 'virtual void ncbi::blast::CMapperMTArgs::ExtractAlgorithmOptions(const ncbi::CArgs&, ncbi::blast::CBlastOptions&)':
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp:205:60: warning: 'unsigned int ncbi::GetCpuCount()' is deprecated [-Wdeprecated-declarations]
205 | const int kMaxValue = static_cast<int>(GetCpuCount());
| ^
In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbifile.hpp:53,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_aux.hpp:39,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_results.hpp:39,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/uniform_search.hpp:40,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/algo/blast/blastinput/magicblast_args.hpp:37,
from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp:35:
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbi_system.hpp:479:14: note: declared here
479 | unsigned int GetCpuCount(void)
| ^~~~~~~~~~~
ld/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp -o deltablast_args.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp -o magicblast_args.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/kblastp_args.cpp -o kblastp_args.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp -o blast_asn1_input.o
/bin/rm -f libblastinput.a .libblastinput.a.stamp
ar cr libblastinput.a blast_input.o blast_fasta_input.o blast_scope_src.o blast_args.o cmdline_flags.o blast_input_aux.o blastp_args.o blastn_args.o rmblastn_args.o blastx_args.o tblastn_args.o tblastx_args.o psiblast_args.o rpsblast_args.o rpstblastn_args.o igblastn_args.o igblastp_args.o deltablast_args.o magicblast_args.o kblastp_args.o blast_asn1_input.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastinput.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libblastinput.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libblastinput.a
/bin/ln -f .blastinput.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.blastinput.dep
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput'
/usr/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/tmp//GMfifo17789 all_r || exit 5
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
NOTE: Skipping project unit_test due to unmet requirements:
Boost.Test.Included
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Nothing to be done for 'mark-as-disabled_r'.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test'
/usr/pkg/bin/gmake -C demo -j3 --jobserver-auth=fifo:/tmp//GMfifo17789 all_r || exit 5
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/demo'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/demo'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput'
/usr/pkg/bin/gmake -C blast_sra_input -j3 --jobserver-auth=fifo:/tmp//GMfifo15933 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blast_sra_input'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blast_sra_input'
/usr/pkg/bin/gmake -C igblast -j3 --jobserver-auth=fifo:/tmp//GMfifo15933 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/igblast TMPL=igblast -j3 --jobserver-auth=fifo:/tmp//GMfifo21546 export-headers
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/igblast TMPL=igblast -j3 --jobserver-auth=fifo:/tmp//GMfifo21546 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/igblast TMPL=igblast -j3 --jobserver-auth=fifo:/tmp//GMfifo21546 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/igblast/igblast.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/igblast/igblast.cpp -o igblast.o
/bin/rm -f libigblast.a .libigblast.a.stamp
ar cr libigblast.a igblast.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libigblast.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libigblast.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libigblast.a
/bin/ln -f .igblast.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.igblast.dep
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast'
/usr/pkg/bin/gmake -C gumbel_params -j3 --jobserver-auth=fifo:/tmp//GMfifo15933 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/gumbel_params'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/gumbel_params'
/usr/pkg/bin/gmake -C vdb -j3 --jobserver-auth=fifo:/tmp//GMfifo15933 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/vdb'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
NOTE: Skipping project vdb due to unmet requirements:
VDB
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/vdb'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/vdb'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/vdb'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/vdb'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/vdb'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/vdb TMPL=vdb2blast -j3 --jobserver-auth=fifo:/tmp//GMfifo7874 mark-as-disabled
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/vdb'
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/vdb'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/vdb'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/vdb'
/usr/pkg/bin/gmake -C unit_tests -j3 --jobserver-auth=fifo:/tmp//GMfifo15933 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
/usr/pkg/bin/gmake -C blast_format -j3 --jobserver-auth=fifo:/tmp//GMfifo10729 all_r || exit 5
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
NOTE: Skipping project blast_format due to unmet requirements:
Boost.Test.Included
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Nothing to be done for 'mark-as-disabled_r'.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format'
/usr/pkg/bin/gmake -C blastdb -j3 --jobserver-auth=fifo:/tmp//GMfifo10729 all_r || exit 5
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
NOTE: Skipping project blastdb due to unmet requirements:
Boost.Test.Included
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Nothing to be done for 'mark-as-disabled_r'.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb'
/usr/pkg/bin/gmake -C seqdb_reader -j3 --jobserver-auth=fifo:/tmp//GMfifo10729 all_r || exit 5
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
NOTE: Skipping project seqdb_reader due to unmet requirements:
Boost.Test.Included
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Nothing to be done for 'mark-as-disabled_r'.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader'
/usr/pkg/bin/gmake -C api -j3 --jobserver-auth=fifo:/tmp//GMfifo10729 all_r || exit 5
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
NOTE: Skipping project api due to unmet requirements:
Boost.Test.Included
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[7]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api'
gmake[7]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[7]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api'
gmake[7]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api'
gmake[7]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[7]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/unit_tests/api TMPL=blast_unit_test_util -j3 --jobserver-auth=fifo:/tmp//GMfifo28290 mark-as-disabled
gmake[7]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[7]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api'
gmake[7]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api'
gmake[7]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api'
gmake[7]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[7]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api'
gmake[7]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api'
gmake[7]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[7]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/blast/unit_tests/api TMPL=seqalign_util -j3 --jobserver-auth=fifo:/tmp//GMfifo28290 mark-as-disabled
gmake[7]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[7]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api'
gmake[7]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api'
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast'
/usr/pkg/bin/gmake -C segmask -j3 --jobserver-auth=fifo:/tmp//GMfifo2927 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/segmask TMPL=xalgosegmask -j3 --jobserver-auth=fifo:/tmp//GMfifo19751 export-headers
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/segmask TMPL=xalgosegmask -j3 --jobserver-auth=fifo:/tmp//GMfifo19751 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/segmask TMPL=xalgosegmask -j3 --jobserver-auth=fifo:/tmp//GMfifo19751 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/segmask/segmask.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/algo/segmask/segmask.cpp -o segmask.o
/bin/rm -f libxalgosegmask.a .libxalgosegmask.a.stamp
ar cr libxalgosegmask.a segmask.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgosegmask.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libxalgosegmask.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxalgosegmask.a
/bin/ln -f .xalgosegmask.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xalgosegmask.dep
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask'
/usr/pkg/bin/gmake -C align -j3 --jobserver-auth=fifo:/tmp//GMfifo2927 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/align'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/align'
/usr/pkg/bin/gmake -C structure -j3 --jobserver-auth=fifo:/tmp//GMfifo2927 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/structure'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/structure'
/usr/pkg/bin/gmake -C gnomon -j3 --jobserver-auth=fifo:/tmp//GMfifo2927 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/gnomon'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/gnomon'
/usr/pkg/bin/gmake -C tree -j3 --jobserver-auth=fifo:/tmp//GMfifo2927 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/tree'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/tree'
/usr/pkg/bin/gmake -C phy_tree -j3 --jobserver-auth=fifo:/tmp//GMfifo2927 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/phy_tree'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/phy_tree'
/usr/pkg/bin/gmake -C seqqa -j3 --jobserver-auth=fifo:/tmp//GMfifo2927 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/seqqa'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/seqqa'
/usr/pkg/bin/gmake -C cobalt -j3 --jobserver-auth=fifo:/tmp//GMfifo2927 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/cobalt'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/cobalt'
/usr/pkg/bin/gmake -C text -j3 --jobserver-auth=fifo:/tmp//GMfifo2927 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/text'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/text'
/usr/pkg/bin/gmake -C volume_merge -j3 --jobserver-auth=fifo:/tmp//GMfifo2927 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/volume_merge'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/volume_merge'
/usr/pkg/bin/gmake -C primer -j3 --jobserver-auth=fifo:/tmp//GMfifo2927 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/primer'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/primer'
/usr/pkg/bin/gmake -C id_mapper -j3 --jobserver-auth=fifo:/tmp//GMfifo2927 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/id_mapper'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/id_mapper'
gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo'
/usr/pkg/bin/gmake -C misc -j3 --jobserver-auth=fifo:/tmp//GMfifo22236 all_r || exit 5
gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc'
gmake[2]: warning: -j3 forced in submake: resetting jobserver mode.
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/misc/clog/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/misc/grid_cgi/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/misc/xmlwrapp/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/misc/grid_cgi/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/misc/grid_cgi/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/misc/eutils_client/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/misc/xmlwrapp/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/misc/xmlwrapp/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/misc/clog/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/misc/clog/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/misc/hydra_client/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/misc/discrepancy/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/misc/discrepancy/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/misc/discrepancy/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/misc/xmlreaders/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/misc/hydra_client/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/misc/hydra_client/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/misc/eutils_client/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/misc/eutils_client/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/misc/hgvs/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/misc/netstorage/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/misc/netstorage/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/misc/netstorage/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/misc/xmlreaders/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/misc/xmlreaders/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/misc/hgvs/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/misc/hgvs/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/misc/biosample_util/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/misc/data_loaders_util/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/misc/biosample_util/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/misc/biosample_util/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/misc/lapackwrapp/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/misc/data_loaders_util/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/misc/data_loaders_util/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/misc/lapackwrapp/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/misc/lapackwrapp/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/misc/pmcidconv_client/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/misc/cgi_redirect/Makefile.in`
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT clog/Makefile
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/misc/pmcidconv_client/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/misc/pmcidconv_client/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/misc/cgi_redirect/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/misc/cgi_redirect/Makefile.in
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT grid_cgi/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT xmlwrapp/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/clog/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT eutils_client/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/grid_cgi/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/xmlwrapp/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT hydra_client/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/eutils_client/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT discrepancy/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT xmlreaders/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/hydra_client/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/xmlreaders/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT hgvs/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT netstorage/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/discrepancy/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/hgvs/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT biosample_util/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/netstorage/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT data_loaders_util/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT lapackwrapp/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/data_loaders_util/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/biosample_util/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT pmcidconv_client/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT cgi_redirect/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/lapackwrapp/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/pmcidconv_client/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/cgi_redirect/Makefile
/usr/pkg/bin/gmake -C third_party -j3 --jobserver-auth=fifo:/tmp//GMfifo20767 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/third_party'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/third_party'
/usr/pkg/bin/gmake -C third_party_static -j3 --jobserver-auth=fifo:/tmp//GMfifo20767 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/third_party_static'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
NOTE: Skipping project third_party_static due to unmet requirements:
-DLL
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/third_party_static'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Nothing to be done for 'mark-as-disabled_r'.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/third_party_static'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/third_party_static'
/usr/pkg/bin/gmake -C clog -j3 --jobserver-auth=fifo:/tmp//GMfifo20767 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/clog'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/clog'
/usr/pkg/bin/gmake -C grid_cgi -j3 --jobserver-auth=fifo:/tmp//GMfifo20767 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/grid_cgi'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/grid_cgi'
/usr/pkg/bin/gmake -C xmlwrapp -j3 --jobserver-auth=fifo:/tmp//GMfifo20767 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/xmlwrapp'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/xmlwrapp'
/usr/pkg/bin/gmake -C eutils_client -j3 --jobserver-auth=fifo:/tmp//GMfifo20767 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/eutils_client'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/eutils_client'
/usr/pkg/bin/gmake -C hydra_client -j3 --jobserver-auth=fifo:/tmp//GMfifo20767 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/hydra_client'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/hydra_client'
/usr/pkg/bin/gmake -C discrepancy -j3 --jobserver-auth=fifo:/tmp//GMfifo20767 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/discrepancy'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/discrepancy'
/usr/pkg/bin/gmake -C xmlreaders -j3 --jobserver-auth=fifo:/tmp//GMfifo20767 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/xmlreaders'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/xmlreaders'
/usr/pkg/bin/gmake -C hgvs -j3 --jobserver-auth=fifo:/tmp//GMfifo20767 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/hgvs'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/hgvs'
/usr/pkg/bin/gmake -C netstorage -j3 --jobserver-auth=fifo:/tmp//GMfifo20767 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/netstorage'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/netstorage'
/usr/pkg/bin/gmake -C jsonwrapp -j3 --jobserver-auth=fifo:/tmp//GMfifo20767 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/jsonwrapp'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
/usr/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/tmp//GMfifo23881 all_r || exit 5
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/jsonwrapp/test'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/jsonwrapp/test'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/jsonwrapp/test'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/jsonwrapp/test'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: *** No rule to make target '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/jsonwrapp/test'
NOTE: skipping project "test_jsonwrapp" due to unmet requirements
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/jsonwrapp/test'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/jsonwrapp/test'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/jsonwrapp/test'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: *** No rule to make target '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/jsonwrapp/test'
NOTE: skipping project "test_jsonwrapp" due to unmet requirements
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/jsonwrapp/test'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/jsonwrapp'
/usr/pkg/bin/gmake -C biosample_util -j3 --jobserver-auth=fifo:/tmp//GMfifo20767 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/biosample_util'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/biosample_util'
/usr/pkg/bin/gmake -C data_loaders_util -j3 --jobserver-auth=fifo:/tmp//GMfifo20767 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/data_loaders_util'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/data_loaders_util'
/usr/pkg/bin/gmake -C lapackwrapp -j3 --jobserver-auth=fifo:/tmp//GMfifo20767 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/lapackwrapp'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/lapackwrapp'
/usr/pkg/bin/gmake -C pmcidconv_client -j3 --jobserver-auth=fifo:/tmp//GMfifo20767 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/pmcidconv_client'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/pmcidconv_client'
NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/pkg/bin/gmake -C cgi_redirect -j3 --jobserver-auth=fifo:/tmp//GMfifo20767 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/cgi_redirect'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/cgi_redirect'
gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc'
/usr/pkg/bin/gmake -C gui -j3 --jobserver-auth=fifo:/tmp//GMfifo22236 all_r || exit 5
gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/gui'
gmake[2]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/gui'
/usr/pkg/bin/gmake -C app -j3 --jobserver-auth=fifo:/tmp//GMfifo22236 all_r || exit 5
gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app'
gmake[2]: warning: -j3 forced in submake: resetting jobserver mode.
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/asn2asn/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/asn2fasta/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/asn2flat/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/asn2asn/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/asn2asn/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/asn2fasta/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/asn2fasta/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/flat2asn/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/asn2flat/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/asn2flat/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/asnval/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/flat2asn/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/flat2asn/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/asnval/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/asnval/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/asn_cleanup/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/id1_fetch/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/convert_seq/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/asn_cleanup/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/asn_cleanup/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/convert_seq/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/convert_seq/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/id1_fetch/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/id1_fetch/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/nmer_repeats/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/objmgr/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/gi2taxid/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/nmer_repeats/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/nmer_repeats/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/objmgr/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/objmgr/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/netschedule/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/grid/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/gi2taxid/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/gi2taxid/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/netschedule/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/netschedule/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/grid/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/grid/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/netstorage/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/igblast/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/vecscreen/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/netstorage/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/netstorage/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/agpconvert/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/igblast/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/igblast/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/vecscreen/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/vecscreen/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/id2_fetch/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/agpconvert/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/agpconvert/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/agp_validate/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/objextract/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/id2_fetch/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/id2_fetch/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/agp_validate/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/agp_validate/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/bdb_env_keeper/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/objextract/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/objextract/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/nw_aligner/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/speedtest/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/bdb_env_keeper/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/bdb_env_keeper/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/idmapper/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/speedtest/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/speedtest/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/idmapper/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/idmapper/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/formatguess/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/multireader/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/formatguess/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/formatguess/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/read_blast_result/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/read_blast_result/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/read_blast_result/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/splign/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/nw_aligner/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/nw_aligner/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/multireader/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/multireader/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/splign/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/splign/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/hfilter/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/annotwriter/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/hfilter/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/hfilter/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/annotwriter/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/annotwriter/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/compart/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/streamtest/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/lds2_indexer/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/compart/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/compart/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/streamtest/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/streamtest/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/lds2_indexer/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/lds2_indexer/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/discrepancy_report/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/biosample_chk/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/discrepancy_report/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/discrepancy_report/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/bsdiff/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/gap_stats/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/biosample_chk/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/biosample_chk/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/bsdiff/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/bsdiff/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/table2asn/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/srcchk/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/table2asn/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/table2asn/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/srcchk/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/srcchk/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/tableval/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/ncbi_encrypt/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/gap_stats/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/gap_stats/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/ssub_fork/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/tableval/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/tableval/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/ncbi_encrypt/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/ncbi_encrypt/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/ssub_fork/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/ssub_fork/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/asn_cache/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/magicblast/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/multipattern/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/asn_cache/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/asn_cache/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/magicblast/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/magicblast/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/multipattern/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/multipattern/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/prt2fsm/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/pub_report/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/pub_report/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/pub_report/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/prt2fsm/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/prt2fsm/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/gff_deconcat/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/gff_deconcat/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/gff_deconcat/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/sub_fuse/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/feat_import/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/split_cache/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/sub_fuse/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/sub_fuse/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/wig2table/Makefile.in`
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/split_cache/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/split_cache/Makefile.in
test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/feat_import/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/feat_import/Makefile.in
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test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/wig2table/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/wig2table/Makefile.in
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test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/rmblastn/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/rmblastn/Makefile.in
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test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/idfetch/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/idfetch/Makefile.in
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/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT gff_deconcat/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT sub_fuse/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/gff_deconcat/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT feat_import/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/pub_report/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/sub_fuse/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT split_cache/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT wig2table/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/feat_import/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT netcache/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/split_cache/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT rmblastn/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/wig2table/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/netcache/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/rmblastn/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT dblb/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT tls/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT idfetch/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/dblb/Makefile
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT pubseq_gateway/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/idfetch/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/tls/Makefile
config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/pubseq_gateway/Makefile
/usr/pkg/bin/gmake -C asn2asn -j3 --jobserver-auth=fifo:/tmp//GMfifo12902 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/asn2asn'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/asn2asn'
/usr/pkg/bin/gmake -C asn2fasta -j3 --jobserver-auth=fifo:/tmp//GMfifo12902 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/asn2fasta'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/asn2fasta'
/usr/pkg/bin/gmake -C asn2flat -j3 --jobserver-auth=fifo:/tmp//GMfifo12902 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/asn2flat'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/asn2flat'
/usr/pkg/bin/gmake -C flat2asn -j3 --jobserver-auth=fifo:/tmp//GMfifo12902 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/flat2asn'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/flat2asn'
/usr/pkg/bin/gmake -C asnval -j3 --jobserver-auth=fifo:/tmp//GMfifo12902 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/asnval'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/asnval'
/usr/pkg/bin/gmake -C asn_cleanup -j3 --jobserver-auth=fifo:/tmp//GMfifo12902 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/asn_cleanup'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/asn_cleanup'
/usr/pkg/bin/gmake -C id1_fetch -j3 --jobserver-auth=fifo:/tmp//GMfifo12902 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/id1_fetch'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/id1_fetch'
/usr/pkg/bin/gmake -C blast -j3 --jobserver-auth=fifo:/tmp//GMfifo12902 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast/Makefile.legacy_blast builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast -j3 --jobserver-auth=fifo:/tmp//GMfifo7106 all
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast/legacy_blast.pl /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin
/bin/ln -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast/legacy_blast.pl /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/legacy_blast.pl
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast/Makefile.update_blastdb builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast -j3 --jobserver-auth=fifo:/tmp//GMfifo7106 all
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast/update_blastdb.pl /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin
/bin/ln -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast/update_blastdb.pl /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/update_blastdb.pl
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast/Makefile.get_species_taxids builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast -j3 --jobserver-auth=fifo:/tmp//GMfifo7106 all
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast/get_species_taxids.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin
/bin/ln -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast/get_species_taxids.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/get_species_taxids.sh
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast/Makefile.cleanup-blastdb-volumes builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast -j3 --jobserver-auth=fifo:/tmp//GMfifo7106 all
gmake[6]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast/cleanup-blastdb-volumes.py /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin
/bin/ln -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast/cleanup-blastdb-volumes.py /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/cleanup-blastdb-volumes.py
gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blast_app_util -j3 --jobserver-auth=fifo:/tmp//GMfifo10716 export-headers
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blast_app_util -j3 --jobserver-auth=fifo:/tmp//GMfifo10716 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blastp -j3 --jobserver-auth=fifo:/tmp//GMfifo10716 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blastn -j3 --jobserver-auth=fifo:/tmp//GMfifo10716 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blastx -j3 --jobserver-auth=fifo:/tmp//GMfifo10716 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=tblastn -j3 --jobserver-auth=fifo:/tmp//GMfifo10716 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=tblastx -j3 --jobserver-auth=fifo:/tmp//GMfifo10716 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=psiblast -j3 --jobserver-auth=fifo:/tmp//GMfifo10716 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=rpsblast -j3 --jobserver-auth=fifo:/tmp//GMfifo10716 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=rpstblastn -j3 --jobserver-auth=fifo:/tmp//GMfifo10716 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blast_formatter -j3 --jobserver-auth=fifo:/tmp//GMfifo10716 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blast_report -j3 --jobserver-auth=fifo:/tmp//GMfifo10716 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=deltablast -j3 --jobserver-auth=fifo:/tmp//GMfifo10716 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=seedtop -j3 --jobserver-auth=fifo:/tmp//GMfifo10716 flag-stamps
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blast_app_util -j3 --jobserver-auth=fifo:/tmp//GMfifo10716 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast/blast_app_util.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast/blast_app_util.cpp -o blast_app_util.o
/bin/rm -f libblast_app_util.a .libblast_app_util.a.stamp
ar cr libblast_app_util.a blast_app_util.o
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_app_util.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib
/bin/ln -f libblast_app_util.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libblast_app_util.a
/bin/ln -f .blast_app_util.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.blast_app_util.dep
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blastp -j3 --jobserver-auth=fifo:/tmp//GMfifo10716 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastp_node.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastp_app.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blastp -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastp_node.cpp -o blastp_node.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blastp -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastp_app.cpp -o blastp_app.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 blastp_node.o blastp_app.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -lpthread -o blastp
strip blastp
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastp /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin
/bin/ln -f blastp /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/blastp
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blastn -j3 --jobserver-auth=fifo:/tmp//GMfifo10716 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastn_app.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastn_node.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blastn -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastn_node.cpp -o blastn_node.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blastn -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastn_app.cpp -o blastn_app.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 blastn_node.o blastn_app.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lxformat-static -lxcleanup-static -lvalid-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lsubmit-static -lxregexp-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -lpthread -o blastn
strip blastn
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin
/bin/ln -f blastn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/blastn
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blastx -j3 --jobserver-auth=fifo:/tmp//GMfifo10716 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastx_app.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastx_node.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blastx -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastx_node.cpp -o blastx_node.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blastx -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastx_app.cpp -o blastx_app.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 blastx_node.o blastx_app.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -lpthread -o blastx
strip blastx
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastx /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin
/bin/ln -f blastx /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/blastx
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=tblastn -j3 --jobserver-auth=fifo:/tmp//GMfifo10716 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast/tblastn_node.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast/tblastn_app.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=tblastn -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast/tblastn_node.cpp -o tblastn_node.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=tblastn -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast/tblastn_app.cpp -o tblastn_app.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 tblastn_node.o tblastn_app.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -lpthread -o tblastn
strip tblastn
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin
/bin/ln -f tblastn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/tblastn
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=tblastx -j3 --jobserver-auth=fifo:/tmp//GMfifo10716 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast/tblastx_app.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=tblastx -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast/tblastx_app.cpp -o tblastx_app.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 tblastx_app.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -lpthread -o tblastx
strip tblastx
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastx /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin
/bin/ln -f tblastx /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/tblastx
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=psiblast -j3 --jobserver-auth=fifo:/tmp//GMfifo10716 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast/psiblast_app.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=psiblast -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast/psiblast_app.cpp -o psiblast_app.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 psiblast_app.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -lpthread -o psiblast
strip psiblast
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin
/bin/ln -f psiblast /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/psiblast
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=rpsblast -j3 --jobserver-auth=fifo:/tmp//GMfifo10716 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast/rpsblast_node.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast/rpsblast_app.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=rpsblast -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast/rpsblast_node.cpp -o rpsblast_node.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=rpsblast -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast/rpsblast_app.cpp -o rpsblast_app.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 rpsblast_node.o rpsblast_app.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -lpthread -o rpsblast
strip rpsblast
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpsblast /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin
/bin/ln -f rpsblast /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/rpsblast
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=rpstblastn -j3 --jobserver-auth=fifo:/tmp//GMfifo10716 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast/rpstblastn_node.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast/rpstblastn_app.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=rpstblastn -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast/rpstblastn_node.cpp -o rpstblastn_node.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=rpstblastn -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast/rpstblastn_app.cpp -o rpstblastn_app.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 rpstblastn_node.o rpstblastn_app.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -lpthread -o rpstblastn
strip rpstblastn
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpstblastn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin
/bin/ln -f rpstblastn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/rpstblastn
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blast_formatter -j3 --jobserver-auth=fifo:/tmp//GMfifo10716 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast/blast_formatter.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blast_formatter -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast/blast_formatter.cpp -o blast_formatter.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 blast_formatter.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -lpthread -o blast_formatter
strip blast_formatter
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_formatter /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin
/bin/ln -f blast_formatter /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/blast_formatter
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blast_report -j3 --jobserver-auth=fifo:/tmp//GMfifo10716 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast/blast_report.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blast_report -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast/blast_report.cpp -o blast_report.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 blast_report.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -lpthread -o blast_report
strip blast_report
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_report /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin
/bin/ln -f blast_report /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/blast_report
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=deltablast -j3 --jobserver-auth=fifo:/tmp//GMfifo10716 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast/deltablast_app.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=deltablast -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast/deltablast_app.cpp -o deltablast_app.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 deltablast_app.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -lpthread -o deltablast
strip deltablast
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f deltablast /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin
/bin/ln -f deltablast /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/deltablast
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=seedtop -j3 --jobserver-auth=fifo:/tmp//GMfifo10716 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast/seedtop_app.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=seedtop -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/blast/seedtop_app.cpp -o seedtop_app.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 seedtop_app.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -lpthread -o seedtop
strip seedtop
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seedtop /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin
/bin/ln -f seedtop /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/seedtop
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast'
/usr/pkg/bin/gmake -C convert_seq -j3 --jobserver-auth=fifo:/tmp//GMfifo12902 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/convert_seq'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/convert_seq'
/usr/pkg/bin/gmake -C nmer_repeats -j3 --jobserver-auth=fifo:/tmp//GMfifo12902 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/nmer_repeats'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/nmer_repeats'
/usr/pkg/bin/gmake -C objmgr -j3 --jobserver-auth=fifo:/tmp//GMfifo12902 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/objmgr'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/objmgr'
/usr/pkg/bin/gmake -C gi2taxid -j3 --jobserver-auth=fifo:/tmp//GMfifo12902 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/gi2taxid'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/gi2taxid'
/usr/pkg/bin/gmake -C netschedule -j3 --jobserver-auth=fifo:/tmp//GMfifo12902 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/netschedule'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/netschedule'
/usr/pkg/bin/gmake -C grid -j3 --jobserver-auth=fifo:/tmp//GMfifo12902 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/grid'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/grid'
/usr/pkg/bin/gmake -C netstorage -j3 --jobserver-auth=fifo:/tmp//GMfifo12902 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/netstorage'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/netstorage'
/usr/pkg/bin/gmake -C igblast -j3 --jobserver-auth=fifo:/tmp//GMfifo12902 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/igblast'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/igblast'
/usr/pkg/bin/gmake -C winmasker -j3 --jobserver-auth=fifo:/tmp//GMfifo12902 all_r || exit 5
gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker'
gmake[3]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker'
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker'
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/winmasker/Makefile.windowmasker_2.2.22_adapter builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/winmasker -j3 --jobserver-auth=fifo:/tmp//GMfifo20662 all
gmake[5]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker'
/bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin
/bin/ln -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/windowmasker_2.2.22_adapter.py
gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/winmasker TMPL=winmasker -j3 --jobserver-auth=fifo:/tmp//GMfifo2356 flag-stamps
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker'
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker'
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker'
/usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/winmasker TMPL=winmasker -j3 --jobserver-auth=fifo:/tmp//GMfifo2356 all
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxser-static.a(typeinfo.o): in function `ncbi::CTypeInfo::GetModuleName[abi:cxx11]() const':
(.text+0x264): relocation truncated to fit: GPREL16 against symbol `ncbi::CNcbiEmptyString::m_Str[abi:cxx11]' defined in .sbss section in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxncbi-static.a(ncbistr.o)
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxser-static.a(typeinfo.o): in function `ncbi::CTypeInfo::GetName[abi:cxx11]() const':
(.text+0x1334): relocation truncated to fit: GPREL16 against symbol `ncbi::CNcbiEmptyString::m_Str[abi:cxx11]' defined in .sbss section in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxncbi-static.a(ncbistr.o)
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxser-static.a(typeinfo.o): in function `ncbi::CTypeInfo::GetInternalName[abi:cxx11]() const':
(.text+0x1394): relocation truncated to fit: GPREL16 against symbol `ncbi::CNcbiEmptyString::m_Str[abi:cxx11]' defined in .sbss section in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxncbi-static.a(ncbistr.o)
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxser-static.a(typeinfo.o): in function `ncbi::CTypeInfo::GetInternalModuleName[abi:cxx11]() const':
(.text+0x13f4): relocation truncated to fit: GPREL16 against symbol `ncbi::CNcbiEmptyString::m_Str[abi:cxx11]' defined in .sbss section in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxncbi-static.a(ncbistr.o)
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxser-static.a(typeinfo.o): in function `ncbi::CTypeInfo::GetNamespaceName[abi:cxx11]() const':
(.text+0x1a30): relocation truncated to fit: GPREL16 against symbol `ncbi::CNcbiEmptyString::m_Str[abi:cxx11]' defined in .sbss section in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxncbi-static.a(ncbistr.o)
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxser-static.a(typeinfo.o): in function `ncbi::CTypeInfo::GetNamespacePrefix[abi:cxx11]() const':
(.text+0x1b80): relocation truncated to fit: GPREL16 against symbol `ncbi::CNcbiEmptyString::m_Str[abi:cxx11]' defined in .sbss section in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxncbi-static.a(ncbistr.o)
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxser-static.a(typeinfo.o): in function `_GLOBAL__sub_I_typeinfo.cpp':
(.text.startup+0x94): relocation truncated to fit: GPREL16 against symbol `guard variable for bm::all_set<true>::_block' defined in .sbss._ZGVN2bm7all_setILb1EE6_blockE[_ZGVN2bm7all_setILb1EE6_blockE] section in win_mask_app.o
(.text.startup+0xb4): relocation truncated to fit: GPREL16 against symbol `bm::all_set<true>::_block' defined in .bss._ZN2bm7all_setILb1EE6_blockE[_ZN2bm7all_setILb1EE6_blockE] section in win_mask_app.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxser-static.a(objectinfo.o): in function `std::_Function_handler<bool (char), std::__detail::_AnyMatcher<std::__cxx11::regex_traits<char>, false, false, true> >::_M_invoke(std::_Any_data const&, char&&)':
(.text._ZNSt17_Function_handlerIFbcENSt8__detail11_AnyMatcherINSt7__cxx1112regex_traitsIcEELb0ELb0ELb1EEEE9_M_invokeERKSt9_Any_dataOc[_ZNSt17_Function_handlerIFbcENSt8__detail11_AnyMatcherINSt7__cxx1112regex_traitsIcEELb0ELb0ELb1EEEE9_M_invokeERKSt9_Any_dataOc]+0x1c): relocation truncated to fit: GPREL16 against symbol `guard variable for std::__detail::_AnyMatcher<std::__cxx11::regex_traits<char>, false, false, true>::operator()(char) const::__nul' defined in .sbss._ZGVZNKSt8__detail11_AnyMatcherINSt7__cxx1112regex_traitsIcEELb0ELb0ELb1EEclEcE5__nul[_ZGVZNKSt8__detail11_AnyMatcherINSt7__cxx1112regex_traitsIcEELb0ELb0ELb1EEclEcE5__nul] section in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxser-static.a(objectinfo.o)
(.text._ZNSt17_Function_handlerIFbcENSt8__detail11_AnyMatcherINSt7__cxx1112regex_traitsIcEELb0ELb0ELb1EEEE9_M_invokeERKSt9_Any_dataOc[_ZNSt17_Function_handlerIFbcENSt8__detail11_AnyMatcherINSt7__cxx1112regex_traitsIcEELb0ELb0ELb1EEEE9_M_invokeERKSt9_Any_dataOc]+0x40): relocation truncated to fit: GPREL16 against symbol `std::__detail::_AnyMatcher<std::__cxx11::regex_traits<char>, false, false, true>::operator()(char) const::__nul' defined in .sbss._ZZNKSt8__detail11_AnyMatcherINSt7__cxx1112regex_traitsIcEELb0ELb0ELb1EEclEcE5__nul[_ZZNKSt8__detail11_AnyMatcherINSt7__cxx1112regex_traitsIcEELb0ELb0ELb1EEclEcE5__nul] section in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxser-static.a(objectinfo.o)
(.text._ZNSt17_Function_handlerIFbcENSt8__detail11_AnyMatcherINSt7__cxx1112regex_traitsIcEELb0ELb0ELb1EEEE9_M_invokeERKSt9_Any_dataOc[_ZNSt17_Function_handlerIFbcENSt8__detail11_AnyMatcherINSt7__cxx1112regex_traitsIcEELb0ELb0ELb1EEEE9_M_invokeERKSt9_Any_dataOc]+0x48): additional relocation overflows omitted from the output
gmake[4]: *** [/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app:159: windowmasker] Error 1
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker'
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/winmasker/main.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/winmasker/win_mask_app.cpp.
Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp.
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=windowmasker -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/winmasker/main.cpp -o main.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=windowmasker -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/winmasker/win_mask_app.cpp -o win_mask_app.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=windowmasker -DNCBI_BUILD_SESSION_ID=8226f3ac-db8f-4b74-bb5e-34ed17608343 /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp -o win_mask_sdust_masker.o
/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++17 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 main.o win_mask_app.o win_mask_sdust_masker.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lxalgowinmask -lxalgodustmask -lblast -lcomposition_adjustment -lseqmasks_io -lseqdb -lblastdb -ltables -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -lpthread -o windowmasker
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker'
FAILED: src/app/winmasker/Makefile.winmasker.app
gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
/bin/rm -f windowmasker .windowmasker.stamp
gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker'
gmake[3]: *** [/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.meta_l:337: all.nonusr] Error 2
gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker'
gmake[2]: *** [/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.meta_r:41: all_r.real] Error 5
gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app'
gmake[1]: *** [/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.meta_r:41: all_r.real] Error 5
gmake[1]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build'
gmake: *** [Makefile:24: all] Error 2
*** Error code 2
Stop.
make[1]: stopped in /usr/pkgsrc/biology/ncbi-blast+
*** Error code 1
Stop.
make: stopped in /usr/pkgsrc/biology/ncbi-blast+