=> Bootstrap dependency digest>=20211023: found digest-20220214 => Checksum BLAKE2s OK for R-4.4.1.tar.gz => Checksum SHA512 OK for R-4.4.1.tar.gz ===> Installing dependencies for R-4.4.1 ========================================================================== The following variables will affect the build process of this package, R-4.4.1. Their current value is shown below: * JPEG_DEFAULT = jpeg * KRB5_DEFAULT = heimdal * PKGSRC_BLAS_TYPES = netlib openblas openblas_pthread openblas_openmp * SSLBASE = /usr * SSLCERTBUNDLE (not defined) * SSLCERTS = /etc/openssl/certs * SSLDIR = /etc/openssl * SSLKEYS = /etc/openssl/private Based on these variables, the following variables have been set: * BLAS_INCLUDES (not defined) * BLAS_LIBS = -lblas * BLAS_PC = blas * BLAS_TYPE = netlib * CBLAS_LIBS (not defined) * CBLAS_PC (not defined) * JPEGBASE (defined, but empty) * JPEG_TYPE = jpeg * KRB5BASE (defined, but empty) * KRB5_TYPE = heimdal * LAPACKE_LIBS (not defined) * LAPACKE_PC (not defined) * LAPACK_LIBS = -llapack -lblas * LAPACK_PC = lapack * TERMCAP_TYPE = termcap You may want to abort the process now with CTRL-C and change the value of variables in the first group before continuing. Be sure to run `/usr/bin/make clean' after the changes. ========================================================================== => Tool dependency glib2-tools-[0-9]*: found glib2-tools-2.80.4 => Tool dependency libtool-fortran>=2.4.2nb9: found libtool-fortran-2.4.7nb1 => Tool dependency libtool-base>=2.4.2nb9: found libtool-base-2.4.7nb1 => Tool dependency mktools-[0-9]*: found mktools-20220614 => Tool dependency automake>=1.9: found automake-1.16.5nb3 => Tool dependency autoconf>=2.58: found autoconf-2.72 => Tool dependency gmake>=3.81: found gmake-4.4.1 => Tool dependency imake-[0-9]*: found imake-1.0.10 => Tool dependency gtexinfo>=5.1: found gtexinfo-7.1 => Tool dependency pkgconf-[0-9]*: found pkgconf-2.3.0 => Tool dependency distcc-[0-9]*: found distcc-3.4 => Tool dependency cwrappers>=20150314: found cwrappers-20220403 => Build dependency x11-links>=1.36: found x11-links-1.36 => Full dependency perl>=5.0: found perl-5.38.2 => Full dependency libiconv>=1.9.1nb4: found libiconv-1.17 => Full dependency gettext-lib>=0.22: found gettext-lib-0.22.5 => Full dependency glib2>=2.76.4nb1: found glib2-2.80.4 => Full dependency pcre2>=10.30: found pcre2-10.44 => Full dependency pango>=1.52.2nb1: found pango-1.54.0 => Full dependency png>=1.6.0nb1: found png-1.6.44 => Full dependency cairo>=1.18.0nb2: found cairo-1.18.2 => Full dependency readline>=6.0: found readline-8.2nb2 => Full dependency jpeg>=9: found jpeg-9f => Full dependency tiff>=4.6.0: found tiff-4.7.0 => Full dependency lapack>=3.9.0nb1: found lapack-3.12.0 => Full dependency curl>=8.7.1nb1: found curl-8.10.1 => Full dependency tk>=8.6.13nb1: found tk-8.6.14 => Full dependency gcc10>=10.3.0nb2: found gcc10-10.5.0nb2 ===> Skipping vulnerability checks. WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found. WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'. ===> Overriding tools for R-4.4.1 ===> Extracting for R-4.4.1 ===> Patching for R-4.4.1 => Applying pkgsrc patches for R-4.4.1 ===> Creating toolchain wrappers for R-4.4.1 ===> Configuring for R-4.4.1 autoreconf: export WARNINGS= autoreconf: Entering directory '.' autoreconf: configure.ac: not using Gettext autoreconf: running: aclocal --force configure.ac:1866: warning: macro 'AM_LANGINFO_CODESET' not found in library configure.ac:2437: warning: macro 'AM_NLS' not found in library configure.ac:2441: warning: macro 'AM_GNU_GETTEXT_VERSION' not found in library configure.ac:2442: warning: macro 'AM_GNU_GETTEXT' not found in library autoreconf: configure.ac: tracing configure.ac: warning: AM_GNU_GETTEXT is used, but not AM_GNU_GETTEXT_VERSION or AM_GNU_GETTEXT_REQUIRE_VERSION autoreconf: running: libtoolize --copy --force libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'tools'. libtoolize: copying file 'tools/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' libtoolize: Consider adding '-I m4' to ACLOCAL_AMFLAGS in Makefile.am. autoreconf: configure.ac: not using Intltool autoreconf: configure.ac: not using Gtkdoc autoreconf: running: aclocal --force configure.ac:1866: warning: macro 'AM_LANGINFO_CODESET' not found in library configure.ac:2437: warning: macro 'AM_NLS' not found in library configure.ac:2441: warning: macro 'AM_GNU_GETTEXT_VERSION' not found in library configure.ac:2442: warning: macro 'AM_GNU_GETTEXT' not found in library autoreconf: running: /usr/pkg/bin/autoconf --force autoreconf: running: /usr/pkg/bin/autoheader --force autoreconf: configure.ac: not using Automake autoreconf: Leaving directory '.' => Generating pkg-config files for builtin xz package. => Generating pkg-config file for builtin expat package. => Modifying GNU configure scripts to avoid --recheck => Replacing config-guess with pkgsrc versions => Replacing config-sub with pkgsrc versions => Replacing install-sh with pkgsrc version checking build system type... aarch64_be--netbsd checking host system type... aarch64_be--netbsd loading site script './config.site' loading build-specific script './config.site' checking for pwd... /bin/pwd checking whether builddir is srcdir... yes checking whether ln -s works... yes checking for ar... ar checking for a BSD-compatible install... /usr/bin/install -c -o pbulk -g users checking for sed... /usr/bin/sed checking for which... /usr/bin/which checking for less... /usr/bin/less checking for gtar... no checking for gnutar... no checking for tar... /bin/tar checking for tex... no checking for pdftex... no configure: WARNING: you cannot build PDF versions of the R manuals checking for pdflatex... 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(cached) yes checking whether bzip2 support suffices... yes checking for lzma_version_number in -llzma... yes checking for lzma.h... yes checking if lzma version >= 5.0.3... yes checking for libdeflate.h... no checking for pcre2.h... yes checking for pcre2_compile_8 in -lpcre2-8... yes checking if PCRE2 has Unicode support... yes checking whether PCRE support suffices... yes checking for curl-config... /usr/pkg/bin/curl-config checking libcurl version ... 8.10.1 checking for curl/curl.h... yes checking if libcurl is >= 7.28.0... yes checking if libcurl supports https... yes checking if pkg-config knows about libjpeg... yes checking if jpeglib version >= 6b... yes checking for jpeg_destroy_compress in -ljpeg... yes checking if pkg-config knows about libpng... yes checking if libpng version >= 1.2.7... yes checking for png_create_write_struct in -lpng... yes checking if pkg-config knows about libtiff... yes checking for tiffio.h... yes checking for TIFFOpen in -ltiff... yes checking whether leap seconds are treated according to POSIX... yes checking for inline... inline checking for struct stat.st_atim.tv_nsec... yes checking whether struct stat.st_atim is of type struct timespec... yes checking for setitimer... yes checking for gcc option to enable large file support... none needed checking for declarations of fseeko and ftello... yes checking whether KERN_USRSTACK sysctl is supported... no checking for lpr... lpr checking for paperconf... false checking for Fortran flag to compile .f90 files... none checking for Fortran flag to compile .f95 files... none checking for gfortran option to support OpenMP... (cached) -fopenmp checking for recommended packages... yes checking whether NLS is requested... no checking whether OpenMP SIMD reduction is supported... yes using as R_SHELL for scripts ... /bin/sh configure: creating ./config.status config.status: creating Makeconf config.status: creating Makefile config.status: creating doc/Makefile config.status: creating doc/html/Makefile config.status: creating doc/manual/Makefile config.status: creating etc/Makefile config.status: creating etc/Makeconf config.status: creating etc/Renviron config.status: creating etc/javaconf config.status: creating etc/ldpaths config.status: creating m4/Makefile config.status: creating po/Makefile config.status: creating share/Makefile config.status: creating src/Makefile config.status: creating src/appl/Makefile config.status: creating src/extra/Makefile config.status: creating src/extra/blas/Makefile config.status: creating src/extra/intl/Makefile config.status: creating src/extra/tre/Makefile config.status: creating src/extra/tzone/Makefile config.status: creating src/extra/xdr/Makefile config.status: creating src/include/Makefile config.status: creating src/include/Rmath.h0 config.status: creating src/include/R_ext/Makefile config.status: creating src/library/Recommended/Makefile config.status: creating src/library/Makefile config.status: creating src/library/base/DESCRIPTION config.status: creating src/library/base/Makefile config.status: creating src/library/compiler/DESCRIPTION config.status: creating src/library/compiler/Makefile config.status: creating src/library/datasets/DESCRIPTION config.status: creating src/library/datasets/Makefile config.status: creating src/library/graphics/DESCRIPTION config.status: creating src/library/graphics/Makefile config.status: creating src/library/graphics/src/Makefile config.status: creating src/library/grDevices/DESCRIPTION config.status: creating src/library/grDevices/Makefile config.status: creating src/library/grDevices/src/Makefile config.status: creating src/library/grDevices/src/cairo/Makefile config.status: creating src/library/grid/DESCRIPTION config.status: creating src/library/grid/Makefile config.status: creating src/library/grid/src/Makefile config.status: creating src/library/methods/DESCRIPTION config.status: creating src/library/methods/Makefile config.status: creating src/library/methods/src/Makefile config.status: creating src/library/parallel/DESCRIPTION config.status: creating src/library/parallel/Makefile config.status: creating src/library/parallel/src/Makefile config.status: creating src/library/profile/Makefile config.status: creating src/library/stats/DESCRIPTION config.status: creating src/library/stats/Makefile config.status: creating src/library/stats/src/Makefile config.status: creating src/library/stats4/DESCRIPTION config.status: creating src/library/stats4/Makefile config.status: creating src/library/splines/DESCRIPTION config.status: creating src/library/splines/Makefile config.status: creating src/library/splines/src/Makefile config.status: creating src/library/tcltk/DESCRIPTION config.status: creating src/library/tcltk/Makefile config.status: creating src/library/tcltk/src/Makefile config.status: creating src/library/tools/DESCRIPTION config.status: creating src/library/tools/Makefile config.status: creating src/library/tools/src/Makefile config.status: creating src/library/translations/DESCRIPTION config.status: creating src/library/translations/Makefile config.status: creating src/library/utils/DESCRIPTION config.status: creating src/library/utils/Makefile config.status: creating src/library/utils/src/Makefile config.status: creating src/main/Makefile config.status: creating src/modules/Makefile config.status: creating src/modules/X11/Makefile config.status: creating src/modules/internet/Makefile config.status: creating src/modules/lapack/Makefile config.status: creating src/nmath/Makefile config.status: creating src/nmath/standalone/Makefile config.status: creating src/scripts/Makefile config.status: creating src/scripts/R.sh config.status: creating src/scripts/Rcmd config.status: creating src/scripts/javareconf config.status: creating src/scripts/mkinstalldirs config.status: creating src/scripts/pager config.status: creating src/scripts/rtags config.status: creating src/unix/Makefile config.status: creating tests/Makefile config.status: creating tests/Embedding/Makefile config.status: creating tests/Examples/Makefile config.status: creating tools/Makefile config.status: creating src/include/config.h config.status: executing libtool commands rm: libtoolT: No such file or directory config.status: executing stamp-h commands configure: WARNING: --with-libdeflate-compression requires libdeflate R is now configured for aarch64_be--netbsd Source directory: . Installation directory: /usr/pkg C compiler: gcc -O2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 Fortran fixed-form compiler: gfortran -O Default C++ compiler: c++ -std=gnu++17 -O2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 C++11 compiler: c++ -std=gnu++11 -O2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 C++14 compiler: c++ -std=gnu++14 -O2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 C++17 compiler: c++ -std=gnu++17 -O2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 C++20 compiler: C++23 compiler: Fortran free-form compiler: gfortran -O Obj-C compiler: gcc -g -O2 -fobjc-exceptions Interfaces supported: X11, tcltk External libraries: pcre2, readline, BLAS(generic), LAPACK(generic), curl Additional capabilities: PNG, JPEG, TIFF, cairo Options enabled: shared R library, R profiling Capabilities skipped: NLS, ICU Options not enabled: shared BLAS, memory profiling Recommended packages: yes configure: WARNING: you cannot build PDF versions of the R manuals configure: WARNING: you cannot build PDF versions of vignettes and help pages configure: WARNING: I could not determine a browser configure: WARNING: I could not determine a PDF viewer => Modifying libtool scripts to use pkgsrc libtool => Modifying libtool scripts to use pkgsrc depcomp