=> Bootstrap dependency digest>=20010302: found digest-20180917 => Checksum SHA1 OK for gromacs-4.5.5.tar.gz => Checksum RMD160 OK for gromacs-4.5.5.tar.gz => Checksum SHA512 OK for gromacs-4.5.5.tar.gz ===> Installing dependencies for gromacs-4.5.5nb7 ========================================================================== The supported build options for gromacs are: mpi x11 The currently selected options are: mpi x11 You can select which build options to use by setting PKG_DEFAULT_OPTIONS or the following variable. Its current value is shown: PKG_OPTIONS.gromacs (not defined) ========================================================================== => Tool dependency libtool-base>=2.4.2nb9: found libtool-base-2.4.6nb2 => Tool dependency pkgconf-[0-9]*: found pkgconf-1.4.1nb1 => Tool dependency checkperms>=1.1: found checkperms-1.12 => Build dependency x11-links>=1.12: found x11-links-1.12 => Build dependency cwrappers>=20150314: found cwrappers-20180325 => Full dependency perl>=5.0: found perl-5.28.1 => Full dependency mpich>=3: found mpich-3.2.1 => Full dependency fftw>=3.1nb1: found fftw-3.3.8nb1 => Full dependency gsl>=1.5nb1: found gsl-2.5 => Full dependency libxml2>=2.8.0nb2: found libxml2-2.9.8nb4 ===> Overriding tools for gromacs-4.5.5nb7 ===> Extracting for gromacs-4.5.5nb7 ===> Patching for gromacs-4.5.5nb7 => Applying pkgsrc patches for gromacs-4.5.5nb7 => Verifying /usr/pkgsrc/biology/gromacs/patches/patch-aa => Applying pkgsrc patch /usr/pkgsrc/biology/gromacs/patches/patch-aa Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-aa,v 1.3 2013/04/01 08:00:16 sbd Exp $ | |Allow flags to contain commas. | |--- share/template/Makefile.in.orig 2011-09-21 12:38:30.000000000 +0000 |+++ share/template/Makefile.in -------------------------- Patching file share/template/Makefile.in using Plan A... Hunk #1 succeeded at 250. Hunk #2 succeeded at 569. done => Verifying /usr/pkgsrc/biology/gromacs/patches/patch-ad => Applying pkgsrc patch /usr/pkgsrc/biology/gromacs/patches/patch-ad Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-ad,v 1.1 2010/05/16 12:04:03 asau Exp $ | |Libtool wants tag nowadays. | |--- src/gmxlib/nonbonded/nb_kernel_ia32_sse2/Makefile.in.orig 2010-05-15 00:44:35.000000000 +0400 |+++ src/gmxlib/nonbonded/nb_kernel_ia32_sse2/Makefile.in 2010-05-15 00:49:20.000000000 +0400 -------------------------- Patching file src/gmxlib/nonbonded/nb_kernel_ia32_sse2/Makefile.in using Plan A... Hunk #1 succeeded at 91 (offset 5 lines). done => Verifying /usr/pkgsrc/biology/gromacs/patches/patch-ae => Applying pkgsrc patch /usr/pkgsrc/biology/gromacs/patches/patch-ae Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-ae,v 1.1 2010/06/17 09:26:16 asau Exp $ | |Modern libtool requires tag. | |--- src/gmxlib/nonbonded/nb_kernel_ia32_sse/Makefile.in.orig 2009-12-06 21:18:53.000000000 +0000 |+++ src/gmxlib/nonbonded/nb_kernel_ia32_sse/Makefile.in 2010-06-17 07:55:04.000000000 +0000 -------------------------- Patching file src/gmxlib/nonbonded/nb_kernel_ia32_sse/Makefile.in using Plan A... Hunk #1 succeeded at 91 (offset 5 lines). done => Verifying /usr/pkgsrc/biology/gromacs/patches/patch-ag => Applying pkgsrc patch /usr/pkgsrc/biology/gromacs/patches/patch-ag Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-ag,v 1.2 2010/09/03 20:52:39 asau Exp $ | |Modern libtool requires tag. | |--- src/gmxlib/nonbonded/nb_kernel_ia64_double/Makefile.in.orig 2010-07-30 22:55:04.000000000 +0400 |+++ src/gmxlib/nonbonded/nb_kernel_ia64_double/Makefile.in 2010-07-31 11:57:35.000000000 +0400 -------------------------- Patching file src/gmxlib/nonbonded/nb_kernel_ia64_double/Makefile.in using Plan A... Hunk #1 succeeded at 71. done => Verifying /usr/pkgsrc/biology/gromacs/patches/patch-ah => Applying pkgsrc patch /usr/pkgsrc/biology/gromacs/patches/patch-ah Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-ah,v 1.2 2010/09/03 20:52:39 asau Exp $ | |Modern libtool requires tag. | |--- src/gmxlib/nonbonded/nb_kernel_ia64_single/Makefile.in.orig 2010-07-30 22:55:04.000000000 +0400 |+++ src/gmxlib/nonbonded/nb_kernel_ia64_single/Makefile.in 2010-07-31 11:58:30.000000000 +0400 -------------------------- Patching file src/gmxlib/nonbonded/nb_kernel_ia64_single/Makefile.in using Plan A... Hunk #1 succeeded at 71. done => Verifying /usr/pkgsrc/biology/gromacs/patches/patch-ai => Applying pkgsrc patch /usr/pkgsrc/biology/gromacs/patches/patch-ai Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-ai,v 1.1 2010/06/17 09:26:16 asau Exp $ | |Modern libtool requires tag. | |--- src/gmxlib/nonbonded/nb_kernel_x86_64_sse/Makefile.in.orig 2009-12-06 21:18:54.000000000 +0000 |+++ src/gmxlib/nonbonded/nb_kernel_x86_64_sse/Makefile.in 2010-06-17 07:58:21.000000000 +0000 -------------------------- Patching file src/gmxlib/nonbonded/nb_kernel_x86_64_sse/Makefile.in using Plan A... Hunk #1 succeeded at 92 (offset 6 lines). done => Verifying /usr/pkgsrc/biology/gromacs/patches/patch-aj => Applying pkgsrc patch /usr/pkgsrc/biology/gromacs/patches/patch-aj Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-aj,v 1.1 2010/06/17 09:26:16 asau Exp $ | |Modern libtool requires tag. | |--- src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/Makefile.in.orig 2009-12-06 21:18:54.000000000 +0000 |+++ src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/Makefile.in 2010-06-17 07:59:09.000000000 +0000 -------------------------- Patching file src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/Makefile.in using Plan A... Hunk #1 succeeded at 91 (offset 5 lines). done ===> Creating toolchain wrappers for gromacs-4.5.5nb7 ===> Configuring for gromacs-4.5.5nb7 => Generating pkg-config files for builtin xz package. => Modifying GNU configure scripts to avoid --recheck => Replacing config-guess with pkgsrc versions => Replacing config-sub with pkgsrc versions => Replacing install-sh with pkgsrc version => Replacing Perl interpreter in scripts/demux.pl scripts/xplor2gmx.pl. => Fixing locale directory references. => Checking for portability problems in extracted files checking build system type... alpha--netbsd checking host system type... alpha--netbsd checking for a BSD-compatible install... /usr/bin/install -c -o pbulk -g users checking whether build environment is sane... yes checking for a thread-safe mkdir -p... config/install-sh -c -d checking for gawk... /usr/bin/awk checking whether make sets $(MAKE)... yes checking how to create a ustar tar archive... plaintar checking for alpha--netbsd-cc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of gcc... gcc3 checking for alpha--netbsd-f77... g77 checking whether we are using the GNU Fortran 77 compiler... no checking whether g77 accepts -g... no checking dependency style of gcc... gcc3 checking for mpxlc... no checking for mpicc... mpicc checking whether the MPI cc command works... yes checking for MPI_IN_PLACE in collective operations... yes checking for catamount... no checking how to get verbose linking output from g77... configure: WARNING: compilation failed checking for Fortran 77 libraries of g77... checking for dummy main to link with Fortran 77 libraries... none checking for Fortran 77 name-mangling scheme... configure: error: in `/tmp/pkgbuild/biology/gromacs/work/gromacs-4.5.5': configure: error: cannot compile a simple Fortran program See `config.log' for more details. *** Error code 1 Stop. make[1]: stopped in /usr/pkgsrc/biology/gromacs WARNING: *** Please consider adding fortran to USE_LANGUAGES in the package Makefile. *** Error code 1 Stop. make: stopped in /usr/pkgsrc/biology/gromacs