=> Bootstrap dependency digest>=20010302: found digest-20180917 ===> Building for ncbi-blast+-2.7.1nb3 if test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.flat; then \ cd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build && /usr/pkg/bin/gmake -f Makefile.flat; \ elif test -s ""; then \ cd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build && /usr/pkg/bin/gmake all_p; \ else \ cd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build && /usr/pkg/bin/gmake all_r; \ fi gmake[1]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/ctools/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/ctools/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/ctools/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT ctools/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/ctools/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/sra/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/sra/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/sra/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT sra/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/sra/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/gui/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/gui/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/gui/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT gui/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/gui/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/sample/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/sample/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/sample/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT sample/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/sample/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/internal/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/internal/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/internal/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT internal/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/internal/Makefile /usr/pkg/bin/gmake -C corelib -w all_r || exit 5 gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib' gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib/test/Makefile gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib' /usr/pkg/bin/gmake[4] (Makefile.precompile): Nothing to be done for `all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib TMPL=corelib -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib TMPL=test_mt -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: *** No rule to make target '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib' NOTE: skipping project "test_boost" due to unmet requirements gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib TMPL=corelib -w all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/request_status.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_message.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/guard.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_cookies.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_url.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbierror.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_toolkit.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/perf_log.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_autoinit.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/interprocess_lock.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/resource_info.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_strings.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/expr.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/request_control.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/request_ctx.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/version.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/syslog.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/stream_utils.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/rwstreambuf.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/plugin_manager_store.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/plugin_manager.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/obj_store.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbitime.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbithr.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbistre.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbistr.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbireg.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbiobj.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbimtx.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbimempool.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbifile.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbiexpt.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbiexec.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbienv.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidll.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag_p.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidbg.cpp. Updating dependency information for ncbicfg.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbiatomic.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbiargs.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbiapp.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_system.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_stack.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_signal.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_safe_static.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_process.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_param.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_config.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/metareg.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/env_reg.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ddumpable.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/blob_storage.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_os_unix.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_os_unix.cpp -o ncbi_os_unix.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/blob_storage.cpp -o blob_storage.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ddumpable.cpp -o ddumpable.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/env_reg.cpp -o env_reg.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/metareg.cpp -o metareg.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_config.cpp -o ncbi_config.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_param.cpp -o ncbi_param.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_process.cpp -o ncbi_process.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_safe_static.cpp -o ncbi_safe_static.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_signal.cpp -o ncbi_signal.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_stack.cpp -o ncbi_stack.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_system.cpp -o ncbi_system.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbiapp.cpp -o ncbiapp.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbiargs.cpp -o ncbiargs.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbiatomic.cpp -o ncbiatomic.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include ncbicf/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag.cpp: In static member function 'static void ncbi::CDiagContext::sx_ThreadDataTlsCleanup(ncbi::CDiagContextThreadData*, void*)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag.cpp:854:67: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] value->GetProperties(CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:42:0, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag.cpp:35: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbidiag.hpp:1810:34: note: declared here NCBI_DEPRECATED TProperties* GetProperties(EGetProperties flag); ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::SetProperty(const string&, const string&, ncbi::CDiagContext::EPropertyMode)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag.cpp:1824:49: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Create); /* NCBI_FAKE_WARNING */ ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag.cpp:984:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag.cpp: In member function 'std::string ncbi::CDiagContext::GetProperty(const string&, ncbi::CDiagContext::EPropertyMode) const': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag.cpp:1887:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag.cpp:984:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::DeleteProperty(const string&, ncbi::CDiagContext::EPropertyMode)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag.cpp:1912:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag.cpp:984:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::PrintProperties()': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag.cpp:1944:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag.cpp:984:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag.cpp: In static member function 'static void ncbi::CDiagContext::SetupDiag(ncbi::EAppDiagStream, ncbi::CNcbiRegistry*, ncbi::EDiagCollectMessages, const char*)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag.cpp:3244:48: warning: 'virtual bool ncbi::CNcbiApplication::SetupDiag_AppSpecific()' is deprecated [-Wdeprecated-declarations] app->SetupDiag_AppSpecific(); /* NCBI_FAKE_WARNING */ ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbi_param.hpp:41:0, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbifile.hpp:48, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag.cpp:37: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiapp.hpp:362:34: note: declared here NCBI_DEPRECATED virtual bool SetupDiag_AppSpecific(void); ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbifile.cpp: In function 'void ncbi::s_GetFileSystemInfo(const string&, ncbi::CFileUtil::SFileSystemInfo*, ncbi::TFileSystemInfo)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbifile.cpp:5007:10: warning: variable 'need_name_max' set but not used [-Wunused-but-set-variable] bool need_name_max = true; ^ g.c -o ncbicfg.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidbg.cpp -o ncbidbg.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag.cpp -o ncbidiag.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag_p.cpp -o ncbidiag_p.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidll.cpp -o ncbidll.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbienv.cpp -o ncbienv.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbiexec.cpp -o ncbiexec.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbiexpt.cpp -o ncbiexpt.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbifile.cpp -o ncbifile.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbimempool.cpp -o ncbimempool.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbimtx.cpp -o ncbimtx.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbiobj.cpp -o ncbiobj.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbireg.cpp -o ncbireg.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbistr.cpp -o ncbistr.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbithr.cpp: In static member function 'static bool ncbi::CThread::IsMain()': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbithr.cpp:516:9: warning: variable 'id' set but not used [-Wunused-but-set-variable] TID id = sx_ThreadId; ^ .7.1+-src/c++/src/corelib/ncbistre.cpp -o ncbistre.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbithr.cpp -o ncbithr.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbitime.cpp -o ncbitime.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/obj_store.cpp -o obj_store.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/plugin_manager.cpp -o plugin_manager.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/plugin_manager_store.cpp -o plugin_manager_store.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/rwstreambuf.cpp -o rwstreambuf.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/stream_utils.cpp -o stream_utils.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/syslog.cpp -o syslog.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/version.cpp -o version.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/request_ctx.cpp -o request_ctx.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/request_control.cpp -o request_control.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/expr.cpp -o expr.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_strings.c -o ncbi_strings.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/resource_info.cpp -o resource_info.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/interprocess_lock.cpp -o interprocess_lock.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_autoinit.cpp -o ncbi_autoinit.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/perf_log.cpp -o perf_log.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_toolkit.cpp -o ncbi_toolkit.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbierror.cpp -o ncbierror.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_url.cpp -o ncbi_url.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_cookies.cpp -o ncbi_cookies.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/guard.cpp -o guard.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_message.cpp -o ncbi_message.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/request_status.cpp -o request_status.o /bin/rm -f libxncbi.a .libxncbi.a.stamp ar cr libxncbi.a ncbi_os_unix.o blob_storage.o ddumpable.o env_reg.o metareg.o ncbi_config.o ncbi_param.o ncbi_process.o ncbi_safe_static.o ncbi_signal.o ncbi_stack.o ncbi_system.o ncbiapp.o ncbiargs.o ncbiatomic.o ncbicfg.o ncbidbg.o ncbidiag.o ncbidiag_p.o ncbidll.o ncbienv.o ncbiexec.o ncbiexpt.o ncbifile.o ncbimempool.o ncbimtx.o ncbiobj.o ncbireg.o ncbistr.o ncbistre.o ncbithr.o ncbitime.o obj_store.o plugin_manager.o plugin_manager_store.o rwstreambuf.o stream_utils.o syslog.o version.o request_ctx.o request_control.o expr.o ncbi_strings.o resource_info.o interprocess_lock.o ncbi_autoinit.o perf_log.o ncbi_toolkit.o ncbierror.o ncbi_url.o ncbi_cookies.o guard.o ncbi_message.o request_status.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxncbi.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxncbi.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxncbi.a /bin/ln -f .xncbi.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xncbi.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib TMPL=test_mt -w all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/test_mt.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/corelib/test_mt.cpp -o test_mt.o /bin/rm -f libtest_mt.a .libtest_mt.a.stamp ar cr libtest_mt.a test_mt.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtest_mt.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libtest_mt.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libtest_mt.a /bin/ln -f .test_mt.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.test_mt.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: *** No rule to make target '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib' NOTE: skipping project "test_boost" due to unmet requirements gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib' /usr/pkg/bin/gmake -C test -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib/test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib/test' gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib' /usr/pkg/bin/gmake -C util -w all_r || exit 5 gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/diff/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/diff/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/diff/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT diff/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/diff/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/image/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/image/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/image/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT image/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/image/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/qparse/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/qparse/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/qparse/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT qparse/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/qparse/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/lmdb/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/lmdb/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/lmdb/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT lmdb/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/lmdb/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/lmdbxx/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/lmdbxx/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/lmdbxx/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT lmdbxx/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/lmdbxx/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/test/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/demo/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/demo/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/demo/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT demo/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/demo/Makefile /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util TMPL=util -w export-headers gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util' gmake[3]: Nothing to be done for 'export-headers'. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util TMPL=util -w all gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/file_manifest.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/stream_source.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/retry_ctx.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/table_printer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/histogram_binning.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/util_misc.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/rangelist.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/distribution.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/scheduler.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/thread_pool_ctrl.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/thread_pool.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/itransaction.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/multi_writer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/uttp.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/util_exception.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/line_reader.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/ncbi_cache.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/mutex_pool.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/miscmath.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/transmissionrw.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/static_set.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/sgml_entity.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/thread_nonstop.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/dictionary_util.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/dictionary.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/unicode.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/file_obsolete.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/md5.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/ascii85.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/format_guess.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/logrotate.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/strsearch.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/ddump_viewer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/thread_pool_old.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/smalldns.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/itree.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/strbuffer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/bytesrc.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/checksum.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/utf8.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/random_gen.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/random_gen.cpp -o random_gen.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/utf8.cpp -o utf8.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/checksum.cpp -o checksum.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/bytesrc.cpp -o bytesrc.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/strbuffer.cpp -o strbuffer.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include 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-D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/table_printer.cpp -o table_printer.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/retry_ctx.cpp -o retry_ctx.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/stream_source.cpp -o stream_source.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/file_manifest.cpp -o file_manifest.o /bin/rm -f libxutil.a .libxutil.a.stamp ar cr libxutil.a random_gen.o utf8.o checksum.o bytesrc.o strbuffer.o itree.o smalldns.o thread_pool_old.o ddump_viewer.o strsearch.o logrotate.o format_guess.o ascii85.o md5.o file_obsolete.o unicode.o dictionary.o dictionary_util.o thread_nonstop.o sgml_entity.o static_set.o transmissionrw.o miscmath.o mutex_pool.o ncbi_cache.o line_reader.o util_exception.o uttp.o multi_writer.o itransaction.o thread_pool.o thread_pool_ctrl.o scheduler.o distribution.o rangelist.o util_misc.o histogram_binning.o table_printer.o retry_ctx.o stream_source.o file_manifest.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxutil.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxutil.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxutil.a /bin/ln -f .xutil.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xutil.dep gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util' /usr/pkg/bin/gmake -C regexp -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/regexp' NOTE: Skipping project regexp due to unmet requirements: LocalPCRE gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/regexp' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/regexp TMPL=regexp -w mark-as-disabled gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/regexp' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/regexp' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/regexp' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/regexp' /usr/pkg/bin/gmake -C xregexp -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/xregexp' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/xregexp TMPL=xregexp -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/xregexp' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/xregexp TMPL=xregexp_template_tester -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/xregexp' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/xregexp TMPL=xregexp -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/xregexp' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/xregexp/mask_regexp.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/xregexp/arg_regexp.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/xregexp/regexp.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include -I/usr/pkg/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/xregexp/regexp.cpp -o regexp.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include -I/usr/pkg/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/xregexp/arg_regexp.cpp -o arg_regexp.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include -I/usr/pkg/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/xregexp/mask_regexp.cpp -o mask_regexp.o /bin/rm -f libxregexp.a .libxregexp.a.stamp ar cr libxregexp.a regexp.o arg_regexp.o mask_regexp.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxregexp.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxregexp.a /bin/ln -f .xregexp.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xregexp.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/xregexp' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/xregexp TMPL=xregexp_template_tester -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/xregexp' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/xregexp/regexp_template_tester.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/xregexp/regexp_template_tester.cpp -o regexp_template_tester.o /bin/rm -f libxregexp_template_tester.a .libxregexp_template_tester.a.stamp ar cr libxregexp_template_tester.a regexp_template_tester.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp_template_tester.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxregexp_template_tester.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxregexp_template_tester.a /bin/ln -f .xregexp_template_tester.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xregexp_template_tester.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/xregexp' /usr/pkg/bin/gmake -C compress -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress' /usr/pkg/bin/gmake -C bzip2 -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress/bzip2' NOTE: Skipping project bzip2 due to unmet requirements: LocalBZ2 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress/bzip2' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/compress/bzip2 TMPL=bzip2 -w mark-as-disabled gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress/bzip2' /usr/pkg/bin/gmake -C zlib -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress/zlib' NOTE: Skipping project zlib due to unmet requirements: LocalZ gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress/zlib' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/compress/zlib TMPL=zlib -w mark-as-disabled gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress/zlib' /usr/pkg/bin/gmake -C api -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress/api' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/compress/api TMPL=compress -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress/api' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/compress/api TMPL=compress -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress/api' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/archive_zip.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/archive_.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/archive.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/tar.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/reader_zlib.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/lzo.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/zlib.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/bzip2.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/stream_util.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/streambuf.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/stream.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/compress.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/compress.cpp -o compress.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/stream.cpp -o stream.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/streambuf.cpp -o streambuf.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/stream_util.cpp -o stream_util.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/bzip2.cpp -o bzip2.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/zlib.cpp -o zlib.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/lzo.cpp -o lzo.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/reader_zlib.cpp -o reader_zlib.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/tar.cpp -o tar.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/archive.cpp -o archive.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/archive_.cpp -o archive_.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/archive_zip.cpp -o archive_zip.o /bin/rm -f libxcompress.a .libxcompress.a.stamp ar cr libxcompress.a compress.o stream.o streambuf.o stream_util.o bzip2.o zlib.o lzo.o reader_zlib.o tar.o archive.o archive_.o archive_zip.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcompress.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxcompress.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxcompress.a /bin/ln -f .xcompress.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xcompress.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress' /usr/pkg/bin/gmake -C diff -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/diff' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/diff' /usr/pkg/bin/gmake -C image -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/image' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/image' /usr/pkg/bin/gmake -C tables -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/tables' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/tables/test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/tables/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/tables/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/tables/test/Makefile /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/tables TMPL=tables -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/tables' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/tables TMPL=tables -w all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/tables' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/tables/raw_scoremat.c. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/tables/raw_scoremat.c -o raw_scoremat.o /bin/rm -f libtables.a .libtables.a.stamp ar cr libtables.a raw_scoremat.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtables.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libtables.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libtables.a /bin/ln -f .tables.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.tables.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/tables' /usr/pkg/bin/gmake -C test -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/tables/test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/tables/test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/tables' /usr/pkg/bin/gmake -C creaders -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/creaders' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/creaders TMPL=creaders -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/creaders' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/creaders' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/creaders TMPL=creaders -w all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/creaders' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/creaders/alnread.c. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/creaders/alnread.c -o alnread.o /bin/rm -f libcreaders.a .libcreaders.a.stamp ar cr libcreaders.a alnread.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcreaders.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libcreaders.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libcreaders.a /bin/ln -f .creaders.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.creaders.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/creaders' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/creaders' /usr/pkg/bin/gmake -C sequtil -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/sequtil' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/sequtil TMPL=sequtil -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/sequtil' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/sequtil TMPL=sequtil -w all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/sequtil' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/sequtil/sequtil_shared.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/sequtil/sequtil_tables.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/sequtil/sequtil_manip.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/sequtil/sequtil_convert.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/sequtil/sequtil.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/sequtil/sequtil.cpp -o sequtil.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/sequtil/sequtil_convert.cpp -o sequtil_convert.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp -o sequtil_convert_imp.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/sequtil/sequtil_manip.cpp -o sequtil_manip.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/sequtil/sequtil_tables.cpp -o sequtil_tables.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/sequtil/sequtil_shared.cpp -o sequtil_shared.o /bin/rm -f libsequtil.a .libsequtil.a.stamp ar cr libsequtil.a sequtil.o sequtil_convert.o sequtil_convert_imp.o sequtil_manip.o sequtil_tables.o sequtil_shared.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsequtil.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libsequtil.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libsequtil.a /bin/ln -f .sequtil.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.sequtil.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/sequtil' /usr/pkg/bin/gmake -C bitset -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/bitset' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/bitset/test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/bitset/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/bitset/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/bitset/test/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/bitset/demo/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/bitset/demo/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/util/bitset/demo/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT demo/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/bitset/demo/Makefile /usr/pkg/bin/gmake -C test -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/bitset/test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/bitset/test' /usr/pkg/bin/gmake -C demo -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/bitset/demo' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/bitset/demo' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/bitset' /usr/pkg/bin/gmake -C qparse -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/qparse' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/qparse' /usr/pkg/bin/gmake -C lmdb -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/lmdb' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/lmdb' /usr/pkg/bin/gmake -C lmdbxx -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/lmdbxx' /usr/pkg/bin/gmake -C test -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/test' /usr/pkg/bin/gmake -C demo -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/demo' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/demo' gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util' /usr/pkg/bin/gmake -C connect -w all_r || exit 5 gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect' gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ext/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ext/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ext/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT ext/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/ext/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/test/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/daemons/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/daemons/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/daemons/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT daemons/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/daemons/Makefile /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect TMPL=connssl -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect TMPL=connect -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect TMPL=xxconnect -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect TMPL=xconnect -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect TMPL=xthrserv -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect TMPL=connssl -w all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect' /bin/mkdir -p mbedtls Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ssl_tls.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ssl_ticket.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ssl_srv.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ssl_cookie.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ssl_cli.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ssl_ciphersuites.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ssl_cache.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/net_sockets.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/debug.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/x509write_csr.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/x509write_crt.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/x509_csr.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/x509_crt.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/x509_crl.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/x509_create.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/x509.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/pkcs11.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/certs.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/xtea.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/version_features.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/mbedtls_version.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/timing.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/threading.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/sha512.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/sha256.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/sha1.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/rsa.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ripemd160.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/platform.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/pkwrite.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/pkparse.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/pkcs5.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/pkcs12.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/pk_wrap.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/pk.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/pem.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/padlock.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/oid.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/memory_buffer_alloc.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/md_wrap.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/mbedtls_md5.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/md4.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/md2.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/md.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/hmac_drbg.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/havege.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/gcm.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/error.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/entropy_poll.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/entropy.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ecp_curves.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ecp.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ecjpake.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ecdsa.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ecdh.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/dhm.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/des.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ctr_drbg.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/cmac.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/cipher_wrap.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/m/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_gnutls.c: In function 's_GnuTlsCreate': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_gnutls.c:307:5: warning: 'gnutls_connection_end_t' is deprecated [-Wdeprecated-declarations] gnutls_connection_end_t end = (side == eSOCK_Client ^ bedtls/cipher.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ccm.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/camellia.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/blowfish.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/bignum.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/base64.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/asn1write.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/asn1parse.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/arc4.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/aesni.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/aes.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_tls.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_mbedtls.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_gnutls.c. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_gnutls.c -o ncbi_gnutls.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_mbedtls.c -o ncbi_mbedtls.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_tls.c -o ncbi_tls.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/aes.c -o mbedtls/aes.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/aesni.c -o mbedtls/aesni.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/arc4.c -o mbedtls/arc4.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/asn1parse.c -o mbedtls/asn1parse.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/asn1write.c -o mbedtls/asn1write.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/base64.c -o mbedtls/base64.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/bignum.c -o mbedtls/bignum.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/blowfish.c -o mbedtls/blowfish.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/camellia.c -o mbedtls/camellia.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ccm.c -o mbedtls/ccm.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/cipher.c -o mbedtls/cipher.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/cipher_wrap.c -o mbedtls/cipher_wrap.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/cmac.c -o mbedtls/cmac.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ctr_drbg.c -o mbedtls/ctr_drbg.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include 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mbedtls/pkparse.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/pkwrite.c -o mbedtls/pkwrite.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL 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-fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/rsa.c -o mbedtls/rsa.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/sha1.c -o mbedtls/sha1.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/sha256.c -o mbedtls/sha256.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/sha512.c -o mbedtls/sha512.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/threading.c -o mbedtls/threading.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/timing.c -o mbedtls/timing.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/mbedtls_version.c -o mbedtls/mbedtls_version.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/version_features.c -o mbedtls/version_features.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/xtea.c -o mbedtls/xtea.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/certs.c -o mbedtls/certs.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/pkcs11.c -o mbedtls/pkcs11.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/x509.c -o mbedtls/x509.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/x509_create.c -o mbedtls/x509_create.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/x509_crl.c -o mbedtls/x509_crl.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/x509_crt.c -o mbedtls/x509_crt.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/x509_csr.c -o mbedtls/x509_csr.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/net_sockets.c: In function 'mbedtls_net_accept_ncbicxx_2_4_2': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/net_sockets.c:316:37: warning: pointer targets in passing argument 5 of 'getsockopt' differ in signedness [-Wpointer-sign] (void *) &type, &type_len ) != 0 || ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/net_sockets.c:75:0: /usr/include/sys/socket.h:655:5: note: expected '__socklen_t * restrict {aka unsigned int * restrict}' but argument is of type 'int *' int getsockopt(int, int, int, void *__restrict, socklen_t * __restrict); ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/net_sockets.c:326:80: warning: pointer targets in passing argument 3 of 'accept' differ in signedness [-Wpointer-sign] (struct sockaddr *) &client_addr, &n ); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/net_sockets.c:75:0: /usr/include/sys/socket.h:649:5: note: expected '__socklen_t * restrict {aka unsigned int * restrict}' but argument is of type 'int *' int accept(int, struct sockaddr * __restrict, socklen_t * __restrict); ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/net_sockets.c:334:59: warning: pointer targets in passing argument 6 of 'recvfrom' differ in signedness [-Wpointer-sign] (struct sockaddr *) &client_addr, &n ); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/net_sockets.c:75:0: /usr/include/sys/socket.h:660:9: note: expected '__socklen_t * restrict {aka unsigned int * restrict}' but argument is of type 'int *' ssize_t recvfrom(int, void *__restrict, size_t, int, ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/net_sockets.c:369:59: warning: pointer targets in passing argument 3 of 'getsockname' differ in signedness [-Wpointer-sign] (struct sockaddr *) &local_addr, &n ) != 0 || ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/net_sockets.c:75:0: /usr/include/sys/socket.h:654:5: note: expected '__socklen_t * restrict {aka unsigned int * restrict}' but argument is of type 'int *' int getsockname(int, struct sockaddr * __restrict, socklen_t * __restrict); ^ /ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/x509write_crt.c -o mbedtls/x509write_crt.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/x509write_csr.c -o mbedtls/x509write_csr.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/debug.c -o mbedtls/debug.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/net_sockets.c -o mbedtls/net_sockets.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ssl_cache.c -o mbedtls/ssl_cache.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ssl_ciphersuites.c -o mbedtls/ssl_ciphersuites.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ssl_cli.c -o mbedtls/ssl_cli.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ssl_cookie.c -o mbedtls/ssl_cookie.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ssl_srv.c -o mbedtls/ssl_srv.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ssl_ticket.c -o mbedtls/ssl_ticket.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ssl_tls.c -o mbedtls/ssl_tls.o /bin/rm -f libconnssl.a .libconnssl.a.stamp ar cr libconnssl.a ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o mbedtls/aes.o mbedtls/aesni.o mbedtls/arc4.o mbedtls/asn1parse.o mbedtls/asn1write.o mbedtls/base64.o mbedtls/bignum.o mbedtls/blowfish.o mbedtls/camellia.o mbedtls/ccm.o mbedtls/cipher.o mbedtls/cipher_wrap.o mbedtls/cmac.o mbedtls/ctr_drbg.o mbedtls/des.o mbedtls/dhm.o mbedtls/ecdh.o mbedtls/ecdsa.o mbedtls/ecjpake.o mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/md_wrap.o mbedtls/memory_buffer_alloc.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnssl.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libconnssl.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libconnssl.a /bin/ln -f .connssl.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.connssl.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect' /usr/bin/awk: can't open file make_connssl.log.new source line number 4 biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect TMPL=connect -w all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_localip.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_iprange.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_ipv6.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/parson.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_namerd.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_lbos.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_version.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_base64.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_local.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_lb.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_ftp_connector.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_sendmail.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_service_connector.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_dispd.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_host_info.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_service.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_server_info.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_heapmgr.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_memory_connector.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_http_connector.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_file_connector.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_socket_connector.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_connector.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_connection.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_connutil.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_socket.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_util.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_core.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_priv.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_types.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_buffer.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_ansi_ext.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_lbsmd_stub.c. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_lbsmd_stub.c -o ncbi_lbsmd_stub.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_ansi_ext.c -o ncbi_ansi_ext.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_buffer.c -o ncbi_buffer.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_types.c -o ncbi_types.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_priv.c -o ncbi_priv.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_core.c -o ncbi_core.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOUR/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_Attach': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_heapmgr.c:337:68: warning: variable 'p' set but not used [-Wunused-but-set-variable] const SHEAP_HeapBlock* b = (const SHEAP_HeapBlock*) base, *p = 0; ^ CE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_util.c -o ncbi_util.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_socket.c -o ncbi_socket.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_connutil.c -o ncbi_connutil.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_connection.c -o ncbi_connection.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_connector.c -o ncbi_connector.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_socket_connector.c -o ncbi_socket_connector.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_file_connector.c -o ncbi_file_connector.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_http_connector.c -o ncbi_http_connector.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_memory_connector.c -o ncbi_memory_connector.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_heapmgr.c -o ncbi_heapmgr.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_server_info.c -o ncbi_server_info.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_service.c -o ncbi_service.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_host_info.c -o ncbi_host_info.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_namerd.c:39:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_namerd.c: In function 's_ParseResponse': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_namerd.c:965:26: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'time_t {aka long long int}' [-Wformat=] ("Missing JSON {\"addrs[i].meta.expires\"} - " ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_priv.h:219:55: note: in definition of macro 'DO_CORE_LOG_X' (_message), \ ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_namerd.c:964:21: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(eNSub_Json, eLOG_Warning, ^ biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_dispd.c -o ncbi_dispd.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_service_connector.c -o ncbi_service_connector.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_sendmail.c -o ncbi_sendmail.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_ftp_connector.c -o ncbi_ftp_connector.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_lb.c -o ncbi_lb.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_local.c -o ncbi_local.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_base64.c -o ncbi_base64.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_version.c -o ncbi_version.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_lbos.c -o ncbi_lbos.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_namerd.c -o ncbi_namerd.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/parson.c -o parson.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_ipv6.c -o ncbi_ipv6.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_iprange.c -o ncbi_iprange.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_localip.c -o ncbi_localip.o /bin/rm -f libconnect.a .libconnect.a.stamp ar cr libconnect.a ncbi_lbsmd_stub.o ncbi_ansi_ext.o ncbi_buffer.o ncbi_types.o ncbi_priv.o ncbi_core.o ncbi_util.o ncbi_socket.o ncbi_connutil.o ncbi_connection.o ncbi_connector.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_heapmgr.o ncbi_server_info.o ncbi_service.o ncbi_host_info.o ncbi_dispd.o ncbi_service_connector.o ncbi_sendmail.o ncbi_ftp_connector.o ncbi_lb.o ncbi_local.o ncbi_base64.o ncbi_version.o ncbi_lbos.o ncbi_namerd.o parson.o ncbi_ipv6.o ncbi_iprange.o ncbi_localip.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnect.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libconnect.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libconnect.a /bin/ln -f .connect.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.connect.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect TMPL=xxconnect -w all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_monkey.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_lbos_cxx.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_http_session.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_userhost.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_conn_reader_writer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_pipe_connector.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_pipe.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_namedpipe_connector.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_namedpipe.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_misc.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_conn_test.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_conn_stream.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_conn_streambuf.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/email_diag_handler.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_core_cxx.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_socket_cxx.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_socket_cxx.cpp -o ncbi_socket_cxx.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_core_cxx.cpp -o ncbi_core_cxx.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/email_diag_handler.cpp -o email_diag_handler.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_conn_streambuf.cpp -o ncbi_conn_streambuf.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_conn_stream.cpp -o ncbi_conn_stream.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_conn_test.cpp -o ncbi_conn_test.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_misc.cpp -o ncbi_misc.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_namedpipe.cpp -o ncbi_namedpipe.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_namedpipe_connector.cpp -o ncbi_namedpipe_connector.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_pipe.cpp -o ncbi_pipe.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_pipe_connector.cpp -o ncbi_pipe_connector.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_conn_reader_writer.cpp -o ncbi_conn_reader_writer.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_userhost.cpp -o ncbi_userhost.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_http_session.cpp -o ncbi_http_session.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_lbos_cxx.cpp -o ncbi_lbos_cxx.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_monkey.cpp -o ncbi_monkey.o /bin/rm -f libxxconnect.a .libxxconnect.a.stamp ar cr libxxconnect.a ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o ncbi_http_session.o ncbi_lbos_cxx.o ncbi_monkey.o ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o mbedtls/aes.o mbedtls/aesni.o mbedtls/arc4.o mbedtls/asn1parse.o mbedtls/asn1write.o mbedtls/base64.o mbedtls/bignum.o mbedtls/blowfish.o mbedtls/camellia.o mbedtls/ccm.o mbedtls/cipher.o mbedtls/cipher_wrap.o mbedtls/cmac.o mbedtls/ctr_drbg.o mbedtls/des.o mbedtls/dhm.o mbedtls/ecdh.o mbedtls/ecdsa.o mbedtls/ecjpake.o mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/md_wrap.o mbedtls/memory_buffer_alloc.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxxconnect.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxxconnect.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxxconnect.a /bin/ln -f .xxconnect.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xxconnect.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect TMPL=xconnect -w all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect' /bin/rm -f libxconnect.a .libxconnect.a.stamp ar cr libxconnect.a ncbi_lbsmd_stub.o ncbi_ansi_ext.o ncbi_buffer.o ncbi_types.o ncbi_priv.o ncbi_core.o ncbi_util.o ncbi_socket.o ncbi_connutil.o ncbi_connection.o ncbi_connector.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_heapmgr.o ncbi_server_info.o ncbi_service.o ncbi_host_info.o ncbi_dispd.o ncbi_service_connector.o ncbi_sendmail.o ncbi_ftp_connector.o ncbi_lb.o ncbi_local.o ncbi_base64.o ncbi_version.o ncbi_lbos.o ncbi_namerd.o parson.o ncbi_ipv6.o ncbi_iprange.o ncbi_localip.o ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o ncbi_http_session.o ncbi_lbos_cxx.o ncbi_monkey.o ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o mbedtls/aes.o mbedtls/aesni.o mbedtls/arc4.o mbedtls/asn1parse.o mbedtls/asn1write.o mbedtls/base64.o mbedtls/bignum.o mbedtls/blowfish.o mbedtls/camellia.o mbedtls/ccm.o mbedtls/cipher.o mbedtls/cipher_wrap.o mbedtls/cmac.o mbedtls/ctr_drbg.o mbedtls/des.o mbedtls/dhm.o mbedtls/ecdh.o mbedtls/ecdsa.o mbedtls/ecjpake.o mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/md_wrap.o mbedtls/memory_buffer_alloc.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnect.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxconnect.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxconnect.a /bin/ln -f .xconnect.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xconnect.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect TMPL=xthrserv -w all /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/threaded_server.cpp:47:54: warning: 'CThreadedServer' is deprecated [-Wdeprecated-declarations] CSocketRequest(CThreadedServer& server, SOCK sock) // NCBI_FAKE_WARNING ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/threaded_server.cpp:33:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/connect/threaded_server.hpp:77:44: note: declared here NCBI_DEPRECATED_CLASS NCBI_XCONNECT_EXPORT CThreadedServer ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/threaded_server.cpp:52:22: warning: 'CThreadedServer' is deprecated [-Wdeprecated-declarations] CThreadedServer& m_Server; // NCBI_FAKE_WARNING ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/threaded_server.cpp:33:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/connect/threaded_server.hpp:77:44: note: declared here NCBI_DEPRECATED_CLASS NCBI_XCONNECT_EXPORT CThreadedServer ^ gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/connection_pool.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/server_monitor.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/server.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/threaded_server.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/threaded_server.cpp -o threaded_server.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/server.cpp -o server.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/server_monitor.cpp -o server_monitor.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/connection_pool.cpp -o connection_pool.o /bin/rm -f libxthrserv.a .libxthrserv.a.stamp ar cr libxthrserv.a threaded_server.o server.o server_monitor.o connection_pool.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxthrserv.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxthrserv.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxthrserv.a /bin/ln -f .xthrserv.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xthrserv.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -C services -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services/test/Makefile /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services TMPL=xconnserv -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services TMPL=ncbi_xcache_netcache -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services TMPL=ncbi_xblobstorage_netcache -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services TMPL=xconnserv -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/tmp_wn_info.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/compound_id_v0.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/compound_id.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/ns_job_serializer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/ns_output_parser.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/netstorage_direct_nc.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/netstorageobjectinfo.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/netstorageobjectloc.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/netstorage_rpc.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/netstorage.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/json_over_uttp.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/clparser.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/util.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/netservice_protocol_parser.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/netcache_search.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/netcache_api_admin.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/netcache_api.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/netcache_params.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/netcache_rw.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/netcache_key.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_expt.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_key.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_getjob.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_admin.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_reader.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_executor.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_submitter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/netservice_params.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/netservice_api.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/srv_connections.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/remote_app.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/grid_rw_impl.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/grid_globals.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/grid_control_thread.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/wn_offline_mode.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/wn_cleanup.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/wn_main_loop.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/wn_commit_thread.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/grid_client_app.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/grid_client.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/grid_worker_app.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/ns_client_factory.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/grid_worker.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/grid_worker.cpp -o grid_worker.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/ns_client_factory.cpp -o ns_client_factory.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/grid_worker_app.cpp -o grid_worker_app.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/grid_client.cpp -o grid_client.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/grid_client_app.cpp -o grid_client_app.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/wn_commit_thread.cpp -o wn_commit_thread.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/wn_main_loop.cpp -o wn_main_loop.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/wn_cleanup.cpp -o wn_cleanup.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/wn_offline_mode.cpp -o wn_offline_mode.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/grid_control_thread.cpp -o grid_control_thread.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 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-I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/netstorageobjectinfo.cpp -o netstorageobjectinfo.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/netstorage_direct_nc.cpp -o netstorage_direct_nc.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/ns_output_parser.cpp -o ns_output_parser.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/ns_job_serializer.cpp -o ns_job_serializer.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/compound_id.cpp -o compound_id.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/compound_id_v0.cpp -o compound_id_v0.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/tmp_wn_info.cpp -o tmp_wn_info.o /bin/rm -f libxconnserv.a .libxconnserv.a.stamp ar cr libxconnserv.a grid_worker.o ns_client_factory.o grid_worker_app.o grid_client.o grid_client_app.o wn_commit_thread.o wn_main_loop.o wn_cleanup.o wn_offline_mode.o grid_control_thread.o grid_globals.o grid_rw_impl.o remote_app.o srv_connections.o netservice_api.o netservice_params.o netschedule_api.o netschedule_api_submitter.o netschedule_api_executor.o netschedule_api_reader.o netschedule_api_admin.o netschedule_api_getjob.o netschedule_key.o netschedule_api_expt.o netcache_key.o netcache_rw.o netcache_params.o netcache_api.o netcache_api_admin.o netcache_search.o netservice_protocol_parser.o util.o clparser.o json_over_uttp.o netstorage.o netstorage_rpc.o netstorageobjectloc.o netstorageobjectinfo.o netstorage_direct_nc.o ns_output_parser.o ns_job_serializer.o compound_id.o compound_id_v0.o tmp_wn_info.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnserv.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxconnserv.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxconnserv.a /bin/ln -f .xconnserv.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xconnserv.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services TMPL=ncbi_xcache_netcache -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/neticache_client.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/neticache_client.cpp -o neticache_client.o /bin/rm -f libncbi_xcache_netcache.a .libncbi_xcache_netcache.a.stamp ar cr libncbi_xcache_netcache.a neticache_client.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_netcache.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xcache_netcache.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbi_xcache_netcache.a /bin/ln -f .ncbi_xcache_netcache.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbi_xcache_netcache.dep /bin/rm -f libncbi_xcache_netcache-dll.so .libncbi_xcache_netcache-dll.so.stamp /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -shared -o libncbi_xcache_netcache-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O -fPIC neticache_client.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lxconnserv -lxconnect -lxutil -lm -lpthread /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_netcache-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xcache_netcache-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbi_xcache_netcache-dll.so /bin/ln -f .ncbi_xcache_netcache-dll.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbi_xcache_netcache-dll.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services TMPL=ncbi_xblobstorage_netcache -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/blob_storage_netcache.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/connect/services/blob_storage_netcache.cpp -o blob_storage_netcache.o /bin/rm -f libncbi_xblobstorage_netcache.a .libncbi_xblobstorage_netcache.a.stamp ar cr libncbi_xblobstorage_netcache.a blob_storage_netcache.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xblobstorage_netcache.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xblobstorage_netcache.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbi_xblobstorage_netcache.a /bin/ln -f .ncbi_xblobstorage_netcache.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbi_xblobstorage_netcache.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services' /usr/pkg/bin/gmake -C test -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services/test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services/test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services' /usr/pkg/bin/gmake -C ext -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/ext' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/ext' /usr/pkg/bin/gmake -C test -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/test' /usr/pkg/bin/gmake -C daemons -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/daemons' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/daemons' gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -C cgi -w all_r || exit 5 gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/cgi' gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/cgi' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/cgi/test/Makefile /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi TMPL=cgi -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/cgi' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi TMPL=fcgi -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/cgi' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi TMPL=cgi -w all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/cgi' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/user_agent.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/cgi_entry_reader.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/cgiapp_cached.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/cgi_exception.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/cgi_session.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/cgi_serial.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/cgi_util.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/cgi_run.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/ref_args.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/ncbires.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/ncbicgir.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/cgictx.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/cgiapp.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/ncbicgi.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/ncbicgi.cpp -o ncbicgi.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/cgiapp.cpp -o cgiapp.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/cgictx.cpp -o cgictx.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/ncbicgir.cpp -o ncbicgir.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/ncbires.cpp -o ncbires.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/ref_args.cpp -o ref_args.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/cgi_run.cpp -o cgi_run.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/cgi_util.cpp -o cgi_util.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/cgi_serial.cpp -o cgi_serial.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/cgi_session.cpp -o cgi_session.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/cgi_exception.cpp -o cgi_exception.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/cgiapp_cached.cpp -o cgiapp_cached.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/cgi_entry_reader.cpp -o cgi_entry_reader.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/user_agent.cpp -o user_agent.o /bin/rm -f libxcgi.a .libxcgi.a.stamp ar cr libxcgi.a ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_run.o cgi_util.o cgi_serial.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcgi.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxcgi.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxcgi.a /bin/ln -f .xcgi.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xcgi.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/cgi' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi TMPL=fcgi -w all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/cgi' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/fcgi_run.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include -DNCBI_XFCGI_EXPORTS /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/cgi/fcgi_run.cpp -o fcgi_run.o /bin/rm -f libxfcgi.a .libxfcgi.a.stamp ar cr libxfcgi.a ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_util.o cgi_serial.o fcgi_run.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxfcgi.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxfcgi.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxfcgi.a /bin/ln -f .xfcgi.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xfcgi.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/cgi' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/cgi' /usr/pkg/bin/gmake -C test -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/cgi/test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/cgi/test' gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/cgi' /usr/pkg/bin/gmake -C html -w all_r || exit 5 gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/html' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html/test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/html/test/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html/demo/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html/demo/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html/demo/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT demo/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/html/demo/Makefile /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html TMPL=html -w export-headers gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/html' gmake[3]: Nothing to be done for 'export-headers'. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/html' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html TMPL=html -w all gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/html' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html/writer_htmlenc.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html/html_exception.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html/indentstream.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html/commentdiag.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html/components.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html/selection.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html/pager.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html/page.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html/htmlhelper.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html/html.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html/node.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html/node.cpp -o node.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html/html.cpp -o html.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html/htmlhelper.cpp -o htmlhelper.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html/page.cpp -o page.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html/pager.cpp -o pager.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html/selection.cpp -o selection.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html/components.cpp -o components.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html/commentdiag.cpp -o commentdiag.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html/indentstream.cpp -o indentstream.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html/html_exception.cpp -o html_exception.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/html/writer_htmlenc.cpp -o writer_htmlenc.o /bin/rm -f libxhtml.a .libxhtml.a.stamp ar cr libxhtml.a node.o html.o htmlhelper.o page.o pager.o selection.o components.o commentdiag.o indentstream.o html_exception.o writer_htmlenc.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxhtml.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxhtml.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxhtml.a /bin/ln -f .xhtml.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xhtml.dep gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/html' /usr/pkg/bin/gmake -C test -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/html/test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/html/test' /usr/pkg/bin/gmake -C demo -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/html/demo' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/html/demo' gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/html' /usr/pkg/bin/gmake -C build-system -w all_r || exit 5 gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/build-system' /usr/pkg/bin/gmake -C helpers -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/build-system/helpers' /usr/pkg/bin/gmake[3] (Makefile.run_with_lock.app): Nothing to be done for `all'. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/build-system/helpers' /usr/pkg/bin/gmake -C project_tree_builder -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder TMPL=project_tree_builder -w all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/prj_file_collector.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/ptb_registry.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/ptb_gui.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/configurable_file.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_dlls_info.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/proj_projects.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_configure_prj_generator.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/resolver.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/proj_utils.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/proj_src_resolver.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/proj_tree_builder.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/proj_tree.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/proj_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/proj_builder_app.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_sln_generator.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_site.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_project_context.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_generator.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_masterproject_generator.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_makefile.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_configure.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/file_contents.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/file_contents.cpp -o file_contents.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_configure.cpp -o msvc_configure.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_makefile.cpp -o msvc_makefile.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_masterproject_generator.cpp -o msvc_masterproject_generator.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_generator.cpp -o msvc_prj_generator.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.cpp -o msvc_prj_utils.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_project_context.cpp -o msvc_project_context.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_site.cpp -o msvc_site.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_sln_generator.cpp -o msvc_sln_generator.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/proj_builder_app.cpp -o proj_builder_app.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp -o proj_datatool_generated_src.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/proj_item.cpp -o proj_item.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/proj_tree.cpp -o proj_tree.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/proj_tree_builder.cpp -o proj_tree_builder.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/proj_src_resolver.cpp -o proj_src_resolver.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/proj_utils.cpp -o proj_utils.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/resolver.cpp -o resolver.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_configure_prj_generator.cpp -o msvc_configure_prj_generator.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/proj_projects.cpp -o proj_projects.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_dlls_info.cpp -o msvc_dlls_info.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.cpp -o msvc_prj_files_collector.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/configurable_file.cpp -o configurable_file.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/ptb_gui.cpp -o ptb_gui.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/ptb_registry.cpp -o ptb_registry.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp -o mac_prj_generator.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/prj_file_collector.cpp -o prj_file_collector.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O file_contents.o msvc_configure.o msvc_makefile.o msvc_masterproject_generator.o msvc_prj_generator.o msvc_prj_utils.o msvc_project_context.o msvc_site.o msvc_sln_generator.o proj_builder_app.o proj_datatool_generated_src.o proj_item.o proj_tree.o proj_tree_builder.o proj_src_resolver.o proj_utils.o resolver.o msvc_configure_prj_generator.o proj_projects.o msvc_dlls_info.o msvc_prj_files_collector.o configurable_file.o ptb_gui.o ptb_registry.o mac_prj_generator.o prj_file_collector.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lxutil -lxncbi -lxregexp -L/usr/pkg/lib -lpcre -lm -lpthread -o project_tree_builder strip project_tree_builder /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f project_tree_builder /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f project_tree_builder /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/project_tree_builder gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' /usr/pkg/bin/gmake -C msbuild -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' NOTE: Skipping project msbuild due to unmet requirements: MSWin gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msbuild TMPL=msbuild_dataobj -w mark-as-disabled gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/build-system' /usr/pkg/bin/gmake -C serial -w all_r || exit 5 gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial' gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial/test/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/soap/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/soap/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/soap/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT soap/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial/soap/Makefile /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial TMPL=serial -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial TMPL=cserial -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial TMPL=serial -w all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/rpcbase.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/pathhook.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/serialobject.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/serializable.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/objistrjson.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/objostrjson.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/objistrxml.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/objostrxml.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/objistrasnb.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/objostrasnb.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/objistrasn.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/objostrasn.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/objstack.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/objlist.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/objhook.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/exception.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/pack_string.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/delaybuf.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/serial.cpp. Updating dependency 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-D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/rpcbase.cpp -o rpcbase.o /bin/rm -f libxser.a .libxser.a.stamp ar cr libxser.a hookdata.o hookdatakey.o typeinfo.o objectinfo.o objectiter.o objectio.o typeref.o typemap.o stdtypes.o enumerated.o ptrinfo.o autoptrinfo.o continfo.o stltypes.o memberid.o memberlist.o item.o classinfob.o member.o classinfo.o variant.o choice.o choiceptr.o aliasinfo.o objistr.o objostr.o objcopy.o iterator.o serial.o delaybuf.o pack_string.o exception.o objhook.o objlist.o objstack.o objostrasn.o objistrasn.o objostrasnb.o objistrasnb.o objostrxml.o objistrxml.o objostrjson.o objistrjson.o serializable.o serialobject.o pathhook.o rpcbase.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxser.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxser.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxser.a /bin/ln -f .xser.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xser.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial TMPL=cserial -w all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/serialasn.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/asntypes.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/asntypes.cpp -o asntypes.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/serialasn.cpp -o serialasn.o /bin/rm -f libxcser.a .libxcser.a.stamp ar cr libxcser.a asntypes.o serialasn.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcser.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxcser.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxcser.a /bin/ln -f .xcser.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xcser.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial' /usr/pkg/bin/gmake -C datatool -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial/datatool' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool TMPL=datatool -w all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial/datatool' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/traversal_spec_file_parser.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/traversal_node.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/traversal_merger.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/traversal_code_generator.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/traversal_pattern_match_callback.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/jsdparser.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/jsdlexer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/wsdlstr.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/wsdlparser.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/wsdllexer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/xsdparser.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/xsdlexer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/aliasstr.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/rpcgen.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/dtdparser.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/dtdlexer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/dtdaux.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/srcutil.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/comments.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/exceptions.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/lexer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/parser.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/aparser.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/alexer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/fileutil.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/code.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/filecode.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/generate.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/moduleset.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/module.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/mcontainer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/value.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/choiceptrstr.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/choicestr.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/stlstr.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/enumstr.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/classstr.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/stdstr.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/ptrstr.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/typestr.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/choicetype.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/blocktype.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/unitype.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/reftype.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/enumtype.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/statictype.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/namespace.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/type.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/datatool.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/datatool.cpp -o datatool.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/type.cpp -o type.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/namespace.cpp -o namespace.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/statictype.cpp -o statictype.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/enumtype.cpp -o enumtype.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/reftype.cpp -o reftype.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/unitype.cpp -o unitype.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/blocktype.cpp -o blocktype.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/choicetype.cpp -o choicetype.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/typestr.cpp -o typestr.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/ptrstr.cpp -o ptrstr.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/stdstr.cpp -o stdstr.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/classstr.cpp -o classstr.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include 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-I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/traversal_code_generator.cpp -o traversal_code_generator.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/traversal_merger.cpp -o traversal_merger.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/traversal_node.cpp -o traversal_node.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/traversal_spec_file_parser.cpp -o traversal_spec_file_parser.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O datatool.o type.o namespace.o statictype.o enumtype.o reftype.o unitype.o blocktype.o choicetype.o typestr.o ptrstr.o stdstr.o classstr.o enumstr.o stlstr.o choicestr.o choiceptrstr.o value.o mcontainer.o module.o moduleset.o generate.o filecode.o code.o fileutil.o alexer.o aparser.o parser.o lexer.o exceptions.o comments.o srcutil.o dtdaux.o dtdlexer.o dtdparser.o rpcgen.o aliasstr.o xsdlexer.o xsdparser.o wsdllexer.o wsdlparser.o wsdlstr.o jsdlexer.o jsdparser.o traversal_pattern_match_callback.o traversal_code_generator.o traversal_merger.o traversal_node.o traversal_spec_file_parser.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lxser -lxutil -lxncbi -lm -lpthread -o datatool strip datatool /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f datatool /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f datatool /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial/datatool' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial/datatool' /usr/pkg/bin/gmake -C test -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial/test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial/test' /usr/pkg/bin/gmake -C soap -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial/soap' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial/soap' gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial' /usr/pkg/bin/gmake -C db -w all_r || exit 5 gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/db' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/db/bdb/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/db/bdb/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/db/bdb/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT bdb/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/db/bdb/Makefile /usr/pkg/bin/gmake -C sqlite -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/db/sqlite' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/db/sqlite TMPL=sqlitewrapp -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/db/sqlite' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/db/sqlite TMPL=sqlitewrapp -w all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/db/sqlite' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/db/sqlite/sqlitewrapp.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/db/sqlite/sqlitewrapp.cpp -o sqlitewrapp.o /bin/rm -f libsqlitewrapp.a .libsqlitewrapp.a.stamp ar cr libsqlitewrapp.a sqlitewrapp.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsqlitewrapp.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libsqlitewrapp.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libsqlitewrapp.a /bin/ln -f .sqlitewrapp.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.sqlitewrapp.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/db/sqlite' /usr/pkg/bin/gmake -C bdb -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/db/bdb' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/db/bdb' gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/db' /usr/pkg/bin/gmake -C dbapi -w all_r || exit 5 gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/simple/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/simple/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/simple/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT simple/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/simple/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/lang_bind/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/lang_bind/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/lang_bind/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT lang_bind/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/lang_bind/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/test/Makefile /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi TMPL=dbapi -w export-headers gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Nothing to be done for 'export-headers'. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi TMPL=dbapi -w all gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/rw_impl.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/bulkinsert.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/cursor_impl.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/blobstream.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/bytestreambuf.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/cstmt_impl.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/rsmeta_impl.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/rs_impl.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/stmt_impl.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/conn_impl.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/ds_impl.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/err_handler.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver_mgr.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/dbapi.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/active_obj.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/variant.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/variant.cpp -o variant.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/active_obj.cpp -o active_obj.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/dbapi.cpp -o dbapi.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver_mgr.cpp -o driver_mgr.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/err_handler.cpp -o err_handler.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/ds_impl.cpp -o ds_impl.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/conn_impl.cpp -o conn_impl.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/stmt_impl.cpp -o stmt_impl.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/rs_impl.cpp -o rs_impl.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/rsmeta_impl.cpp -o rsmeta_impl.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/cstmt_impl.cpp -o cstmt_impl.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/bytestreambuf.cpp -o bytestreambuf.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/blobstream.cpp -o blobstream.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/cursor_impl.cpp -o cursor_impl.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/bulkinsert.cpp -o bulkinsert.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/rw_impl.cpp -o rw_impl.o /bin/rm -f libdbapi.a .libdbapi.a.stamp ar cr libdbapi.a variant.o active_obj.o dbapi.o driver_mgr.o err_handler.o ds_impl.o conn_impl.o stmt_impl.o rs_impl.o rsmeta_impl.o cstmt_impl.o bytestreambuf.o blobstream.o cursor_impl.o bulkinsert.o rw_impl.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libdbapi.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libdbapi.a /bin/ln -f .dbapi.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.dbapi.dep gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi' /usr/pkg/bin/gmake -C driver -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/util/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/util/Makefile.in || /bin/cp -p 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/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT ctlib/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/ctlib/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/ftds64/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/ftds64/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/ftds64/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT ftds64/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds64/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/ftds95/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/ftds95/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/ftds95/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT ftds95/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds95/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/ftds-default/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/ftds-default/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/ftds-default/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT ftds-default/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds-default/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dblib/Makefile.in` test -f 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/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/mysql/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT mysql/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/mysql/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/samples/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/samples/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/samples/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT samples/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/samples/Makefile /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver TMPL=dbapi_driver -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver TMPL=dbapi_driver -w all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_pool_balancer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_object_convert.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_driver_exception_storage.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_driver_conn_params.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_impl_result.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_impl_context.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_impl_connection.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_impl_cmd.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_driver_utils.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_svc_mapper.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_conn_factory.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_driver_conn_mgr.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/driver_mgr.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/pointer_pot.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/memory_store.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/types.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/public.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/interfaces.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/exception.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/parameters.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/numeric_convert.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/handle_stack.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/handle_stack.cpp -o handle_stack.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/numeric_convert.cpp -o numeric_convert.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/parameters.cpp -o parameters.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/exception.cpp -o exception.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/interfaces.cpp -o interfaces.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/public.cpp -o public.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/types.cpp -o types.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/memory_store.cpp -o memory_store.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/pointer_pot.cpp -o pointer_pot.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/driver_mgr.cpp -o driver_mgr.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_driver_conn_mgr.cpp -o dbapi_driver_conn_mgr.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_conn_factory.cpp -o dbapi_conn_factory.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_svc_mapper.cpp -o dbapi_svc_mapper.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_driver_utils.cpp -o dbapi_driver_utils.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_impl_cmd.cpp -o dbapi_impl_cmd.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_impl_connection.cpp -o dbapi_impl_connection.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_impl_context.cpp -o dbapi_impl_context.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_impl_result.cpp -o dbapi_impl_result.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_driver_conn_params.cpp -o dbapi_driver_conn_params.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_driver_exception_storage.cpp -o dbapi_driver_exception_storage.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_object_convert.cpp -o dbapi_object_convert.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp -o dbapi_driver_convert.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_pool_balancer.cpp -o dbapi_pool_balancer.o /bin/rm -f libdbapi_driver.a .libdbapi_driver.a.stamp ar cr libdbapi_driver.a handle_stack.o numeric_convert.o parameters.o exception.o interfaces.o public.o types.o memory_store.o pointer_pot.o driver_mgr.o dbapi_driver_conn_mgr.o dbapi_conn_factory.o dbapi_svc_mapper.o dbapi_driver_utils.o dbapi_impl_cmd.o dbapi_impl_connection.o dbapi_impl_context.o dbapi_impl_result.o dbapi_driver_conn_params.o dbapi_driver_exception_storage.o dbapi_object_convert.o dbapi_driver_convert.o dbapi_pool_balancer.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi_driver.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libdbapi_driver.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libdbapi_driver.a /bin/ln -f .dbapi_driver.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.dbapi_driver.dep /bin/rm -f libdbapi_driver-dll.so .libdbapi_driver-dll.so.stamp /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -shared -o libdbapi_driver-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O -fPIC handle_stack.o numeric_convert.o parameters.o exception.o interfaces.o public.o types.o memory_store.o pointer_pot.o driver_mgr.o dbapi_driver_conn_mgr.o dbapi_conn_factory.o dbapi_svc_mapper.o dbapi_driver_utils.o dbapi_impl_cmd.o dbapi_impl_connection.o dbapi_impl_context.o dbapi_impl_result.o dbapi_driver_conn_params.o dbapi_driver_exception_storage.o dbapi_object_convert.o dbapi_driver_convert.o dbapi_pool_balancer.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lm -lpthread /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi_driver-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libdbapi_driver-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libdbapi_driver-dll.so /bin/ln -f .dbapi_driver-dll.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.dbapi_driver-dll.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver' /usr/pkg/bin/gmake -C util -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/util' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/util' /usr/pkg/bin/gmake -C ctlib -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/ctlib' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/ctlib' /usr/pkg/bin/gmake -C ftds64 -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds64' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds64' /usr/pkg/bin/gmake -C ftds95 -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds95' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds95' /usr/pkg/bin/gmake -C ftds-default -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds-default' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds-default' /usr/pkg/bin/gmake -C dblib -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/dblib' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/dblib' /usr/pkg/bin/gmake -C mysql -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/mysql' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/mysql' /usr/pkg/bin/gmake -C odbc -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' NOTE: Skipping project odbc due to unmet requirements: ODBC gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/odbc TMPL=ncbi_xdbapi_odbc -w mark-as-disabled gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /bin/echo 'Warning: non-existent sub-project "samples"' Warning: non-existent sub-project "samples" gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /usr/pkg/bin/gmake -C samples -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/samples' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/samples' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver' /usr/pkg/bin/gmake -C simple -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/simple' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/simple' /usr/pkg/bin/gmake -C cache -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/cache' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/cache/test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/cache/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/cache/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/cache/test/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/cache/admintool/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/cache/admintool/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/cache/admintool/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT admintool/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/cache/admintool/Makefile /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/cache TMPL=ncbi_xcache_dbapi -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/cache' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/cache' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/cache TMPL=ncbi_xcache_dbapi -w all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/cache' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/cache/dbapi_blob_cache_cf.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/cache/dbapi_blob_cache.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/cache/dbapi_blob_cache.cpp -o dbapi_blob_cache.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/dbapi/cache/dbapi_blob_cache_cf.cpp -o dbapi_blob_cache_cf.o /bin/rm -f libncbi_xcache_dbapi.a .libncbi_xcache_dbapi.a.stamp ar cr libncbi_xcache_dbapi.a dbapi_blob_cache.o dbapi_blob_cache_cf.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_dbapi.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xcache_dbapi.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbi_xcache_dbapi.a /bin/ln -f .ncbi_xcache_dbapi.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbi_xcache_dbapi.dep /bin/rm -f libncbi_xcache_dbapi-dll.so .libncbi_xcache_dbapi-dll.so.stamp /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -shared -o libncbi_xcache_dbapi-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O -fPIC dbapi_blob_cache.o dbapi_blob_cache_cf.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -ldbapi -ldbapi_driver-dll -lm -lpthread /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_dbapi-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xcache_dbapi-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbi_xcache_dbapi-dll.so /bin/ln -f .ncbi_xcache_dbapi-dll.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbi_xcache_dbapi-dll.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/cache' /usr/pkg/bin/gmake -C test -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/cache/test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/cache/test' /usr/pkg/bin/gmake -C admintool -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/cache/admintool' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/cache/admintool' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/cache' /usr/pkg/bin/gmake -C lang_bind -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/lang_bind' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/lang_bind' /usr/pkg/bin/gmake -C test -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/test' gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi' /usr/pkg/bin/gmake -C objects -w all_r || exit 5 gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects' gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/Makefile.sources builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects -w all Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects' cd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects || exit 2; \ for i in omssa access biblio blast blastdb blastxml blastxml2 cdd cn3d docsum biotree entrez2 entrezgene featdef gbseq general id1 id2 insdseq macro medlars medline mim mla mmdb1 mmdb2 mmdb3 ncbimime objprt proj pub pubmed scoremat seq seqalign seqblock seqcode seqfeat seqloc seqsplit seqres seqset submit taxon1 taxon3 tinyseq pcsubstance pcassay remap homologene seqedit seqtable seqtest trackmgr gbproj valerr valid genesbyloc; do \ if test -f "$i/$i.asn"; then \ MAKE="/usr/pkg/bin/gmake -w"; export MAKE; \ ( cd $i && /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh $i all; ) \ || case "-w" in *k*) ;; *) exit 2 ;; esac; \ else \ echo "Warning: $i/$i.asn not found (skipping)"; \ fi; \ done /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=omssa MODULE_PATH=objects/omssa MODULE_ASN=omssa.asn MODULE_IMPORT='objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/omssa' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m omssa.asn -M "objects/seq/seq.asn" -oA -oc omssa -or objects/omssa -odi -od omssa.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd omssa.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/omssa' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=access MODULE_PATH=objects/access MODULE_ASN=access.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/access' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m access.asn -M "" -oA -oc access -or objects/access -odi -od access.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd access.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/access' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m biblio.asn -M "objects/general/general.asn" -oA -oc biblio -or objects/biblio -odi -od biblio.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd biblio.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat/scoremat.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blast' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m blast.asn -M "objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn" -oA -oc blast -or objects/blast -odi -od blast.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blast.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blast' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastdb' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m blastdb.asn -M "objects/seqloc/seqloc.asn" -oA -oc blastdb -or objects/blastdb -odi -od blastdb.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastdb.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastdb' File Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me blastxml.module not found. Using defaults... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m blastxml.asn -M "" -oA -oc blastxml -or objects/blastxml -odi -od blastxml.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastxml.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml' File blastxml2.module not found. Using defaults... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml2' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m blastxml2.asn -M "" -oA -oc blastxml2 -or objects/blastxml2 -odi -od blastxml2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastxml2.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml2' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=cdd MODULE_PATH=objects/cdd MODULE_ASN=cdd.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seqalign/seqalign objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/scoremat/scoremat' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1/mmdb1.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb2/mmdb2.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb3/mmdb3.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d/cn3d.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat/scoremat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cdd' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m cdd.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn" -oA -oc cdd -or objects/cdd -odi -od cdd.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd cdd.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cdd' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=cn3d MODULE_PATH=objects/cn3d MODULE_ASN=cn3d.asn MODULE_IMPORT='objects/mmdb1/mmdb1' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1/mmdb1.asn' IMPFILES='objects/mmdb1/mmdb1.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m cn3d.asn -M "objects/mmdb1/mmdb1.asn" -oA -oc cn3d -or objects/cn3d -odi -od cn3d.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd cn3d.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=docsum MODULE_PATH=objects/docsum MODULE_ASN=docsum.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/docsum' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m docsum.asn -M "" -oA -oc docsum -or objects/docsum -odi -od docsum.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd docsum.dump datatool: 2.17.0 gmake[5]: [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/docsum' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=biotree MODULE_PATH=objects/biotree MODULE_ASN=biotree.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biotree' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m biotree.asn -M "objects/general/general.asn" -oA -oc biotree -or objects/biotree -odi -od biotree.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd biotree.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biotree' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m entrez2.asn -M "" -oA -oc entrez2 -or objects/entrez2 -odi -od entrez2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd entrez2.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=entrezgene MODULE_PATH=objects/entrezgene MODULE_ASN=entrezgene.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrezgene' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m entrezgene.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn" -oA -oc entrezgene -or objects/entrezgene -odi -od entrezgene.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd entrezgene.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrezgene' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=featdef MODULE_PATH=objects/featdef MODULE_ASN=featdef.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/featdef' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m featdef.asn -M "" -oA -oc featdef -or objects/featdef -odi -od featdef.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd featdef.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/featdef' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbseq' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m gbseq.asn -M "" -oA -oc gbseq -or objects/gbseq -odi -od gbseq.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd gbseq.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbseq' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m general.asn -M "" -oA -oc general -or objects/general -odi -od general.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd general.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefi[2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me le.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id1' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m id1.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn" -oA -oc id1 -or objects/id1 -odi -od id1.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd id1.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id1' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqsplit/seqsplit.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id2' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m id2.asn -M "objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn" -oA -oc id2 -or objects/id2 -odi -od id2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd id2.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id2' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=insdseq MODULE_PATH=objects/insdseq MODULE_ASN=insdseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/insdseq' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m insdseq.asn -M "" -oA -oc insdseq -or objects/insdseq -odi -od insdseq.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd insdseq.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/insdseq' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m macro.asn -M "" -oA -oc macro -or objects/macro -odi -od macro.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd macro.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medlars' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m medlars.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA -oc medlars -or objects/medlars -odi -od medlars.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd medlars.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medlars' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m medline.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA -[2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me oc medline -or objects/medline -odi -od medline.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd medline.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=mim MODULE_PATH=objects/mim MODULE_ASN=mim.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mim' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m mim.asn -M "" -oA -oc mim -or objects/mim -odi -od mim.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd mim.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mim' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medlars/medlars.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed/pubmed.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mla' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m mla.asn -M "objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn" -oA -oc mla -or objects/mla -odi -od mla.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd mla.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mla' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb1 MODULE_PATH=objects/mmdb1 MODULE_ASN=mmdb1.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb2/mmdb2 objects/mmdb3/mmdb3' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb2/mmdb2.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m mmdb1.asn -M "objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn" -oA -oc mmdb1 -or objects/mmdb1 -odi -od mmdb1.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd mmdb1.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb2 MODULE_PATH=objects/mmdb2 MODULE_ASN=mmdb2.asn MODULE_IMPORT='objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb3/mmdb3' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1/mmdb1.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb2' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m mmdb2.asn -M "objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn" -oA -oc mmdb2 -or objects/mmdb2 -odi -od mmdb2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd mmdb2.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb2' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb3 MODULE_PATH=objects/mmdb3 MODULE_ASN=mmdb3.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb2/mmdb2' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1/mmdb1.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb2/mmdb2.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEAR[2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me CH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb3' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m mmdb3.asn -M "objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn" -oA -oc mmdb3 -or objects/mmdb3 -odi -od mmdb3.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd mmdb3.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb3' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=ncbimime MODULE_PATH=objects/ncbimime MODULE_ASN=ncbimime.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/cdd/cdd' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1/mmdb1.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb2/mmdb2.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb3/mmdb3.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d/cn3d.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cdd/cdd.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/ncbimime' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m ncbimime.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn" -oA -oc ncbimime -or objects/ncbimime -odi -od ncbimime.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd ncbimime.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/ncbimime' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=objprt MODULE_PATH=objects/objprt MODULE_ASN=objprt.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/objprt' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m objprt.asn -M "" -oA -oc objprt -or objects/objprt -odi -od objprt.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd objprt.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/objprt' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=proj MODULE_PATH=objects/proj MODULE_ASN=proj.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pubmed/pubmed objects/seqloc/seqloc objects/seq/seq objects/seqset/seqset' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed/pubmed.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/proj' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m proj.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn" -oA -oc proj -or objects/proj -odi -od proj.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd proj.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/proj' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7[2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me .1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m pub.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA -oc pub -or objects/pub -odi -od pub.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd pub.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m pubmed.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA -oc pubmed -or objects/pubmed -odi -od pubmed.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd pubmed.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m scoremat.asn -M "objects/seqset/seqset.asn objects/general/general.asn" -oA -oc scoremat -or objects/scoremat -odi -od scoremat.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd scoremat.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqblock/seqblock.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqres/seqres.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m seq.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn" -oA -oc seq -or objects/seq -odi -od seq.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seq.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/p[2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me kgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m seqalign.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqalign -or objects/seqalign -odi -od seqalign.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqalign.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqblock' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m seqblock.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqblock -or objects/seqblock -odi -od seqblock.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqblock.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqblock' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqcode' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m seqcode.asn -M "" -oA -oc seqcode -or objects/seqcode -odi -od seqcode.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqcode.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqcode' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m seqfeat.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn" -oA -oc seqfeat -or objects/seqfeat -odi -od seqfeat.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqfeat.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m seqloc.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn" -oA -oc seqloc -or objects/seqloc -odi -od seqloc.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqloc.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2[2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me .7.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqsplit' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m seqsplit.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn" -oA -oc seqsplit -or objects/seqsplit -odi -od seqsplit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqsplit.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqsplit' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqres' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m seqres.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqres -or objects/seqres -odi -od seqres.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqres.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqres' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m seqset.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn" -oA -oc seqset -or objects/seqset -odi -od seqset.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqset.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/submit' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m submit.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn" -oA -oc submit -or objects/submit -odi -od submit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd submit.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/submit' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbui[2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me ld/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m taxon1.asn -M "objects/seqfeat/seqfeat.asn" -oA -oc taxon1 -or objects/taxon1 -odi -od taxon1.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd taxon1.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon3' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m taxon3.asn -M "objects/seqfeat/seqfeat.asn" -oA -oc taxon3 -or objects/taxon3 -odi -od taxon3.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd taxon3.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon3' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=tinyseq MODULE_PATH=objects/tinyseq MODULE_ASN=tinyseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/tinyseq' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m tinyseq.asn -M "" -oA -oc tinyseq -or objects/tinyseq -odi -od tinyseq.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd tinyseq.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/tinyseq' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=pcsubstance MODULE_PATH=objects/pcsubstance MODULE_ASN=pcsubstance.asn MODULE_IMPORT='objects/general/general objects/pub/pub' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcsubstance' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m pcsubstance.asn -M "objects/general/general.asn objects/pub/pub.asn" -oA -oc pcsubstance -or objects/pcsubstance -odi -od pcsubstance.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd pcsubstance.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcsubstance' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=pcassay MODULE_PATH=objects/pcassay MODULE_ASN=pcassay.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcassay' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m pcassay.asn -M "objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn" -oA -oc pcassay -or objects/pcassay -odi -od pcassay.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd pcassay.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcassay' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=remap MODULE_PATH=objects/remap MODULE_ASN=remap.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/remap' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m remap.asn -M "objects/seqloc/seqloc.asn" -oA -oc remap -or objects/remap -odi -od remap.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd remap.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/remap' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=homologene MODULE_PATH=objects/homologene MODULE_ASN=homologene.asn MODULE_IMPORT='objects/general/general objects/seqalign/seqalign objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-[2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me 2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/homologene' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m homologene.asn -M "objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn" -oA -oc homologene -or objects/homologene -odi -od homologene.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd homologene.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/homologene' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqedit' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m seqedit.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn" -oA -oc seqedit -or objects/seqedit -odi -od seqedit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqedit.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqedit' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqtable' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m seqtable.asn -M "objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn" -oA -oc seqtable -or objects/seqtable -odi -od seqtable.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqtable.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqtable' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqtest MODULE_PATH=objects/seqtest MODULE_ASN=seqtest.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqtest' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m seqtest.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA -oc seqtest -or objects/seqtest -odi -od seqtest.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqtest.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqtest' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=trackmgr MODULE_PATH=objects/trackmgr MODULE_ASN=trackmgr.asn MODULE_IMPORT='objects/seqloc/seqloc objects/general/general' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqloc/seqloc.asn objects/general/general.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering dWarning: (810.1) No service name provided for CTrackMgrClient [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... irectory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m trackmgr.asn -M "objects/seqloc/seqloc.asn objects/general/general.asn" -oA -oc trackmgr -or objects/trackmgr -odi -od trackmgr.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd trackmgr.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=gbproj MODULE_PATH=objects/gbproj MODULE_ASN=gbproj.asn MODULE_IMPORT='objects/seq/seq objects/seqloc/seqloc objects/seqset/seqset objects/general/general objects/submit/submit objects/seqalign/seqalign' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/submit/submit.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m gbproj.asn -M "objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn" -oA -oc gbproj -or objects/gbproj -odi -od gbproj.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd gbproj.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valerr' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m valerr.asn -M "" -oA -oc valerr -or objects/valerr -odi -od valerr.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd valerr.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valerr' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valid' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m valid.asn -M "" -oA -oc valid -or objects/valid -odi -od valid.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd valid.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valid' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=genesbyloc MODULE_PATH=objects/genesbyloc MODULE_ASN=genesbyloc.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genesbyloc' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m genesbyloc.asn -M "" -oA -oc genesbyloc -or objects/genesbyloc -odi -od genesbyloc.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd genesbyloc.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genesbyloc' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects' /usr/pkg/bin/gmake -C general -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/general' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/general/test/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/unit_test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/unit_test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/unit_test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/general/unit_test/Makefile cd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general && /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh general all Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general TMPL=general -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/general' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general TMPL=general -w all irectory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m trackmgr.asn -M "objects/seqloc/seqloc.asn objects/general/general.asn" -oA -oc trackmgr -or objects/trackmgr -odi -od trackmgr.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd trackmgr.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=gbproj MODULE_PATH=objects/gbproj MODULE_ASN=gbproj.asn MODULE_IMPORT='objects/seq/seq objects/seqloc/seqloc objects/seqset/seqset objects/general/general objects/submit/submit objects/seqalign/seqalign' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/submit/submit.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m gbproj.asn -M "objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn" -oA -oc gbproj -or objects/gbproj -odi -od gbproj.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd gbproj.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valerr' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m valerr.asn -M "" -oA -oc valerr -or objects/valerr -odi -od valerr.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd valerr.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valerr' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valid' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m valid.asn -M "" -oA -oc valid -or objects/valid -odi -od valid.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd valid.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valid' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=genesbyloc MODULE_PATH=objects/genesbyloc MODULE_ASN=genesbyloc.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genesbyloc' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m genesbyloc.asn -M "" -oA -oc genesbyloc -or objects/genesbyloc -odi -od genesbyloc.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd genesbyloc.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genesbyloc' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/general' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/uoconv.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general__.cpp -o general__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general___.cpp -o general___.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/uoconv.cpp -o uoconv.o /bin/rm -f libgeneral.a .libgeneral.a.stamp ar cr libgeneral.a general__.o general___.o uoconv.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgeneral.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libgeneral.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libgeneral.a /bin/ln -f .general.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.general.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/general' /usr/pkg/bin/gmake -C test -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/general/test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/general/test' /usr/pkg/bin/gmake -C unit_test -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/general/unit_test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/general/unit_test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/general' /usr/pkg/bin/gmake -C biblio -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/biblio' cd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio && /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh biblio all Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio TMPL=biblio -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/biblio' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio TMPL=biblio -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/biblio' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/citation_base.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio__.cpp -o biblio__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio___.cpp -o biblio___.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/citation_base.cpp -o citation_base.o /bin/rm -f libbiblio.a .libbiblio.a.stamp ar cr libbiblio.a biblio__.o biblio___.o citation_base.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libbiblio.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libbiblio.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libbiblio.a /bin/ln -f .biblio.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.biblio.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/biblio' /usr/pkg/bin/gmake -C medline -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/medline' cd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline && /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh medline all Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline TMPL=medline -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/medline' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline TMPL=medline -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/medline' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline__.cpp -o medline__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline___.cpp -o medline___.o /bin/rm -f libmedline.a .libmedline.a.stamp ar cr libmedline.a medline__.o medline___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedline.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libmedline.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libmedline.a /bin/ln -f .medline.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.medline.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/medline' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/medline' /usr/pkg/bin/gmake -C pub -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pub' cd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub && /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh pub all Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub TMPL=pub -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pub' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub TMPL=pub -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pub' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub__.cpp -o pub__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub___.cpp -o pub___.o /bin/rm -f libpub.a .libpub.a.stamp ar cr libpub.a pub__.o pub___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpub.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libpub.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libpub.a /bin/ln -f .pub.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.pub.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pub' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pub' /usr/pkg/bin/gmake -C seqcode -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqcode' cd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqcode && /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh seqcode all Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqcode' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqcode' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqcode' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqcode' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqcode TMPL=seqcode -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqcode' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqcode TMPL=seqcode -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqcode' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqcode' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqcode' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqcode/seqcode___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqcode/seqcode__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqcode/seqcode__.cpp -o seqcode__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqcode/seqcode___.cpp -o seqcode___.o /bin/rm -f libseqcode.a .libseqcode.a.stamp ar cr libseqcode.a seqcode__.o seqcode___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqcode.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqcode.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libseqcode.a /bin/ln -f .seqcode.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.seqcode.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqcode' /usr/pkg/bin/gmake -C seq -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seq' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seq/test/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/unit_test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/unit_test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/unit_test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seq/unit_test/Makefile gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seq' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/Makefile.sources builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -w all Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seq' status=0 ; \ MAKE="/usr/pkg/bin/gmake -w"; \ export MAKE; \ for x in seqalign seqblock seqfeat seqloc seqres seqtable; do \ d=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../$x ; \ (cd $d && /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh) || status=9 ; \ test -f ${x}__.cpp || \ echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \ test -f ${x}___.cpp || \ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqblock' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqblock' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqres' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqres' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqlo[2] Terminated ${script_dir}/ch... c' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqtable' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqtable' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seq' cd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq && /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh seq all Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqblock/seqblock.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqres/seqres.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqblock/seqblock.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqres/seqres.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq TMPL=seq -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seq' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq TMPL=seq -w all c' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqtable' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqtable' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seq' In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:9:0, from seqalign__.cpp:1: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp: In member function 'void ncbi::objects::CSeq_align::RemapToLoc(ncbi::objects::CSeq_align_Base::TDim, const ncbi::objects::CSeq_loc&, bool)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1381:69: warning: 'void ncbi::objects::CDense_seg::RemapToLoc(ncbi::objects::CDense_seg_Base::TDim, const ncbi::objects::CSeq_loc&, bool)' is deprecated [-Wdeprecated-declarations] SetSegs().SetDenseg().RemapToLoc(row, dst_loc, ignore_strand); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:3:0, from seqalign__.cpp:1: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqalign/Dense_seg.cpp:909:6: note: declared here void CDense_seg::RemapToLoc(TDim row, const CSeq_loc& loc, ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:9:0, from seqalign__.cpp:1: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1385:62: warning: 'void ncbi::objects::CStd_seg::RemapToLoc(ncbi::objects::CStd_seg_Base::TDim, const ncbi::objects::CSeq_loc&, bool)' is deprecated [-Wdeprecated-declarations] (*std_it)->RemapToLoc(row, dst_loc, ignore_strand); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:42:0, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:9, from seqalign__.cpp:1: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objects/seqalign/Std_seg.hpp:79:26: note: declared here NCBI_DEPRECATED void RemapToLoc(TDim row, ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:9:0, from seqalign__.cpp:1: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1390:68: warning: 'void ncbi::objects::CSeq_align::RemapToLoc(ncbi::objects::CSeq_align_Base::TDim, const ncbi::objects::CSeq_loc&, bool)' is deprecated [-Wdeprecated-declarations] (*seq_align_it)->RemapToLoc(row, dst_loc, ignore_strand); ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1364:6: note: declared here void CSeq_align::RemapToLoc(TDim row, ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:30:0, from seqfeat__.cpp:1: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqfeat/PCRPrimerSeq.cpp: In static member function 'static bool ncbi::objects::CPCRPrimerSeq::Fixi(std::string&)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqfeat/PCRPrimerSeq.cpp:249:72: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pos = NStr::Find(seq, "i", pos, NPOS, NStr::eFirst, NStr::eCase); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37:0, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:5473:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:42:0, from seqfeat__.cpp:1: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqfeat/RNA_ref.cpp: In function 'ncbi::CTempString ncbi::objects::s_AaName(int)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqfeat/RNA_ref.cpp:124:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (idx > 0 && idx < ArraySize(sc_TrnaList)) { ^ gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seq' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq_loc_from_string.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/so_map.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/sofa_map.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seqlocinfo.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq_loc_mapper_base.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq_id_mapper.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq_id_handle.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq_id_tree.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seqport_util.cpp. Updating dependency information for seqtable___.cpp. Updating dependency information for seqres___.cpp. Updating dependency information for seqloc___.cpp. Updating dependency information for seqfeat___.cpp. Updating dependency information for seqblock___.cpp. Updating dependency information for seqalign___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq___.cpp. Updating dependency information for seqtable__.cpp. Updating dependency information for seqres__.cpp. Updating dependency information for seqloc__.cpp. Updating dependency information for seqfeat__.cpp. Updating dependency information for seqblock__.cpp. Updating dependency information for seqalign__.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq__.cpp -o seq__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include seqalign__.cpp -o seqalign__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include seqblock__.cpp -o seqblock__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include seqfeat__.cpp -o seqfeat__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include seqloc__.cpp -o seqloc__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include seqres__.cpp -o seqres__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include seqtable__.cpp -o seqtable__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq___.cpp -o seq___.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include seqalign___.cpp -o seqalign___.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include seqblock___.cpp -o seqblock___.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include seqfeat___.cpp -o seqfeat___.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include seqloc___.cpp -o seqloc___.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include seqres___.cpp -o seqres___.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include seqtable___.cpp -o seqtable___.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seqport_util.cpp -o seqport_util.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq_id_tree.cpp -o seq_id_tree.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq_id_handle.cpp -o seq_id_handle.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq_id_mapper.cpp -o seq_id_mapper.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq_loc_mapper_base.cpp -o seq_loc_mapper_base.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOU/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp: In member function 'void ncbi::objects::CSeq_align_Mapper_Base::x_GetDstStd(ncbi::CRef&) const': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp:1505:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( row_n == p_row ) { ^ RCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp -o seq_align_mapper_base.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seqlocinfo.cpp -o seqlocinfo.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/sofa_map.cpp -o sofa_map.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/so_map.cpp -o so_map.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq_loc_from_string.cpp -o seq_loc_from_string.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp -o seq_loc_reverse_complementer.o /bin/rm -f libseq.a .libseq.a.stamp ar cr libseq.a seq__.o seqalign__.o seqblock__.o seqfeat__.o seqloc__.o seqres__.o seqtable__.o seq___.o seqalign___.o seqblock___.o seqfeat___.o seqloc___.o seqres___.o seqtable___.o seqport_util.o seq_id_tree.o seq_id_handle.o seq_id_mapper.o seq_loc_mapper_base.o seq_align_mapper_base.o seqlocinfo.o sofa_map.o so_map.o seq_loc_from_string.o seq_loc_reverse_complementer.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseq.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libseq.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libseq.a /bin/ln -f .seq.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.seq.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seq' /usr/pkg/bin/gmake -C test -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seq/test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seq/test' /usr/pkg/bin/gmake -C unit_test -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seq/unit_test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seq/unit_test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seq' /usr/pkg/bin/gmake -C seqset -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqset' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqset/test/Makefile cd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset && /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh seqset all Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset TMPL=seqset -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqset' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset TMPL=seqset -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqset' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/gb_release_file.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset__.cpp -o seqset__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset___.cpp -o seqset___.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/gb_release_file.cpp -o gb_release_file.o /bin/rm -f libseqset.a .libseqset.a.stamp ar cr libseqset.a seqset__.o seqset___.o gb_release_file.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqset.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqset.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libseqset.a /bin/ln -f .seqset.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.seqset.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqset' /usr/pkg/bin/gmake -C test -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqset/test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqset/test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqset' /usr/pkg/bin/gmake -C submit -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/submit' cd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/submit && /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh submit all Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/submit' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/submit' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/submit' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/submit' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/submit TMPL=submit -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/submit' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/submit TMPL=submit -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/submit' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/submit' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/submit' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/submit/submit___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/submit/submit__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/submit/submit__.cpp -o submit__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/submit/submit___.cpp -o submit___.o /bin/rm -f libsubmit.a .libsubmit.a.stamp ar cr libsubmit.a submit__.o submit___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsubmit.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libsubmit.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libsubmit.a /bin/ln -f .submit.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.submit.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/submit' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/submit' /usr/pkg/bin/gmake -C seqedit -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqedit' cd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqedit && /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh seqedit all Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqedit' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqedit' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqedit' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqedit' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqedit TMPL=seqedit -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqedit' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqedit TMPL=seqedit -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqedit' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqedit' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqedit' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqedit/seqedit___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqedit/seqedit__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqedit/seqedit__.cpp -o seqedit__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqedit/seqedit___.cpp -o seqedit___.o /bin/rm -f libseqedit.a .libseqedit.a.stamp ar cr libseqedit.a seqedit__.o seqedit___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqedit.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqedit.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libseqedit.a /bin/ln -f .seqedit.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.seqedit.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqedit' /usr/pkg/bin/gmake -C seqsplit -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqsplit' cd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqsplit && /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh seqsplit all Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqsplit' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqsplit' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqsplit' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqsplit' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqsplit TMPL=seqsplit -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqsplit' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqsplit TMPL=seqsplit -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqsplit' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqsplit' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqsplit' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqsplit/seqsplit___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqsplit/seqsplit__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqsplit/seqsplit__.cpp -o seqsplit__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqsplit/seqsplit___.cpp -o seqsplit___.o /bin/rm -f libseqsplit.a .libseqsplit.a.stamp ar cr libseqsplit.a seqsplit__.o seqsplit___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqsplit.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqsplit.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libseqsplit.a /bin/ln -f .seqsplit.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.seqsplit.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqsplit' /usr/pkg/bin/gmake -C id1 -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id1' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id1' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id1/test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id1/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id1/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id1/test/Makefile cd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id1 && /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh id1 all Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id1' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id1' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id1' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id1' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id1 TMPL=id1 -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id1' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id1 TMPL=id1cli -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id1' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id1 TMPL=id1 -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id1' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id1' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id1' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id1/id1___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id1/id1__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id1/id1__.cpp -o id1__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id1/id1___.cpp -o id1___.o /bin/rm -f libid1.a .libid1.a.stamp ar cr libid1.a id1__.o id1___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libid1.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libid1.a /bin/ln -f .id1.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.id1.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id1' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id1 TMPL=id1cli -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id1' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id1/id1_client_.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id1/id1_client.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id1/id1_client.cpp -o id1_client.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id1/id1_client_.cpp -o id1_client_.o /bin/rm -f libid1cli.a .libid1cli.a.stamp ar cr libid1cli.a id1_client.o id1_client_.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1cli.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libid1cli.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libid1cli.a /bin/ln -f .id1cli.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.id1cli.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id1' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id1' /usr/pkg/bin/gmake -C test -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id1/test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id1/test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id1' /usr/pkg/bin/gmake -C id2 -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id2' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id2' cd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id2 && /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh id2 all Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqsplit/seqsplit.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id2' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id2' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id2' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id2' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id2 TMPL=id2 -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id2' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id2 TMPL=id2cli -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id2' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id2 TMPL=id2 -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqsplit/seqsplit.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id2' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id2' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id2' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id2/id2___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id2/id2__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id2/id2__.cpp -o id2__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id2/id2___.cpp -o id2___.o /bin/rm -f libid2.a .libid2.a.stamp ar cr libid2.a id2__.o id2___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libid2.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libid2.a /bin/ln -f .id2.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.id2.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id2' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id2 TMPL=id2cli -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id2' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id2/id2_client_.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id2/id2_client.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id2/id2_client.cpp -o id2_client.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/id2/id2_client_.cpp -o id2_client_.o /bin/rm -f libid2cli.a .libid2cli.a.stamp ar cr libid2cli.a id2_client.o id2_client_.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2cli.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libid2cli.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libid2cli.a /bin/ln -f .id2cli.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.id2cli.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id2' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id2' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id2' /usr/pkg/bin/gmake -C entrez2 -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrez2' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2/demo/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2/demo/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2/demo/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT demo/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrez2/demo/Makefile cd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2 && /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh entrez2 all Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2 TMPL=entrez2 -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrez2' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2 TMPL=entrez2cli -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrez2' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2 TMPL=entrez2 -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrez2' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2/entrez2___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2/entrez2__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2/entrez2__.cpp -o entrez2__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2/entrez2___.cpp -o entrez2___.o /bin/rm -f libentrez2.a .libentrez2.a.stamp ar cr libentrez2.a entrez2__.o entrez2___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libentrez2.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libentrez2.a /bin/ln -f .entrez2.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.entrez2.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrez2' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2 TMPL=entrez2cli -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrez2' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2/entrez2_client_.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2/entrez2_client.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2/entrez2_client.cpp -o entrez2_client.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2/entrez2_client_.cpp -o entrez2_client_.o /bin/rm -f libentrez2cli.a .libentrez2cli.a.stamp ar cr libentrez2cli.a entrez2_client.o entrez2_client_.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2cli.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libentrez2cli.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libentrez2cli.a /bin/ln -f .entrez2cli.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.entrez2cli.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrez2' /usr/pkg/bin/gmake -C demo -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrez2/demo' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrez2/demo' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrez2' /usr/pkg/bin/gmake -C pubmed -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pubmed' cd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed && /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh pubmed all Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed TMPL=pubmed -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pubmed' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed TMPL=pubmed -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pubmed' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed/pubmed___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed/pubmed__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed/pubmed__.cpp -o pubmed__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed/pubmed___.cpp -o pubmed___.o /bin/rm -f libpubmed.a .libpubmed.a.stamp ar cr libpubmed.a pubmed__.o pubmed___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpubmed.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libpubmed.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libpubmed.a /bin/ln -f .pubmed.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.pubmed.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pubmed' /usr/pkg/bin/gmake -C medlars -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/medlars' cd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medlars && /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh medlars all Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medlars' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medlars' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medlars' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medlars' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medlars TMPL=medlars -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/medlars' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medlars TMPL=medlars -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medlars' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medlars' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/medlars' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medlars/medlars___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medlars/medlars__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medlars/medlars__.cpp -o medlars__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medlars/medlars___.cpp -o medlars___.o /bin/rm -f libmedlars.a .libmedlars.a.stamp ar cr libmedlars.a medlars__.o medlars___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedlars.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libmedlars.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libmedlars.a /bin/ln -f .medlars.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.medlars.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/medlars' /usr/pkg/bin/gmake -C mla -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mla' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mla' cd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mla && /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh mla all Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medlars/medlars.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed/pubmed.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mla' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mla' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mla' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mla' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mla TMPL=mla -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mla' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mla TMPL=mlacli -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mla' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mla TMPL=mla -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medlars/medlars.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed/pubmed.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mla' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mla' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mla' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mla/mla___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mla/mla__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mla/mla__.cpp -o mla__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mla/mla___.cpp -o mla___.o /bin/rm -f libmla.a .libmla.a.stamp ar cr libmla.a mla__.o mla___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmla.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libmla.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libmla.a /bin/ln -f .mla.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.mla.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mla' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mla TMPL=mlacli -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mla' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mla/mla_client_.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mla/mla_client.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mla/mla_client.cpp -o mla_client.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mla/mla_client_.cpp -o mla_client_.o /bin/rm -f libmlacli.a .libmlacli.a.stamp ar cr libmlacli.a mla_client.o mla_client_.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmlacli.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libmlacli.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libmlacli.a /bin/ln -f .mlacli.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.mlacli.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mla' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mla' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mla' /usr/pkg/bin/gmake -C proj -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/proj' cd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/proj && /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh proj all Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=proj MODULE_PATH=objects/proj MODULE_ASN=proj.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pubmed/pubmed objects/seqloc/seqloc objects/seq/seq objects/seqset/seqset' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed/pubmed.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/proj' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/proj' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/proj' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/proj' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/proj TMPL=proj -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/proj' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/proj TMPL=proj -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=proj MODULE_PATH=objects/proj MODULE_ASN=proj.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pubmed/pubmed objects/seqloc/seqloc objects/seq/seq objects/seqset/seqset' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed/pubmed.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/proj' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/proj' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/proj' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/proj/proj___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/proj/proj__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/proj/proj__.cpp -o proj__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/proj/proj___.cpp -o proj___.o /bin/rm -f libproj.a .libproj.a.stamp ar cr libproj.a proj__.o proj___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libproj.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libproj.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libproj.a /bin/ln -f .proj.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.proj.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/proj' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/proj' /usr/pkg/bin/gmake -C scoremat -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/scoremat' cd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat && /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh scoremat all Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat TMPL=scoremat -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/scoremat' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat TMPL=scoremat -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/scoremat' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat/scoremat___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat/scoremat__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat/scoremat__.cpp -o scoremat__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat/scoremat___.cpp -o scoremat___.o /bin/rm -f libscoremat.a .libscoremat.a.stamp ar cr libscoremat.a scoremat__.o scoremat___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libscoremat.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libscoremat.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libscoremat.a /bin/ln -f .scoremat.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.scoremat.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/scoremat' /usr/pkg/bin/gmake -C blast -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blast' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blast' cd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blast && /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh blast all Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat/scoremat.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blast' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blast' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blast' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blast' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blast TMPL=blast -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blast' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blast TMPL=xnetblastcli -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blast' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blast TMPL=blast -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat/scoremat.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blast' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blast' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blast' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blast/names.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blast/blast___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blast/blast__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blast/blast__.cpp -o blast__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blast/blast___.cpp -o blast___.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blast/names.cpp -o names.o /bin/rm -f libxnetblast.a .libxnetblast.a.stamp ar cr libxnetblast.a blast__.o blast___.o names.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblast.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxnetblast.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxnetblast.a /bin/ln -f .xnetblast.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xnetblast.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blast' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blast TMPL=xnetblastcli -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blast' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blast/blastclient_.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blast/blastclient.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blast/blastclient.cpp -o blastclient.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blast/blastclient_.cpp -o blastclient_.o /bin/rm -f libxnetblastcli.a .libxnetblastcli.a.stamp ar cr libxnetblastcli.a blastclient.o blastclient_.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblastcli.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxnetblastcli.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxnetblastcli.a /bin/ln -f .xnetblastcli.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xnetblastcli.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blast' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blast' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blast' /usr/pkg/bin/gmake -C blastdb -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blastdb' cd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastdb && /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh blastdb all Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastdb' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastdb' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastdb' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastdb' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastdb TMPL=blastdb -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blastdb' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastdb TMPL=blastdb -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastdb' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastdb' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blastdb' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastdb/blastdb___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastdb/blastdb__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastdb/blastdb__.cpp -o blastdb__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastdb/blastdb___.cpp -o blastdb___.o /bin/rm -f libblastdb.a .libblastdb.a.stamp ar cr libblastdb.a blastdb__.o blastdb___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libblastdb.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libblastdb.a /bin/ln -f .blastdb.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.blastdb.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blastdb' /usr/pkg/bin/gmake -C blastxml -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blastxml' cd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml && /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh blastxml all Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml TMPL=blastxml -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blastxml' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml TMPL=blastxml -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blastxml' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml/blastxml___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml/blastxml__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml/blastxml__.cpp -o blastxml__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml/blastxml___.cpp -o blastxml___.o /bin/rm -f libblastxml.a .libblastxml.a.stamp ar cr libblastxml.a blastxml__.o blastxml___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libblastxml.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libblastxml.a /bin/ln -f .blastxml.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.blastxml.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blastxml' /usr/pkg/bin/gmake -C blastxml2 -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blastxml2' cd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml2 && /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh blastxml2 all Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml2' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml2' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml2' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml2' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml2 TMPL=blastxml2 -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blastxml2' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml2 TMPL=blastxml2 -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml2' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml2' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blastxml2' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml2/blastxml2___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml2/blastxml2__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml2/blastxml2__.cpp -o blastxml2__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml2/blastxml2___.cpp -o blastxml2___.o /bin/rm -f libblastxml2.a .libblastxml2.a.stamp ar cr libblastxml2.a blastxml2__.o blastxml2___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml2.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libblastxml2.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libblastxml2.a /bin/ln -f .blastxml2.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.blastxml2.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blastxml2' /usr/pkg/bin/gmake -C mmdb -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mmdb' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb/Makefile.sources builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb -w all Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mmdb' status=0 ; \ MAKE="/usr/pkg/bin/gmake -w"; \ export MAKE; \ for x in mmdb1 mmdb2 mmdb3; do \ d=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb/../$x ; \ (cd $d && /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh) || status=9 ; \ test -f ${x}__.cpp || \ echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \ test -f ${x}___.cpp || \ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb1 MODULE_PATH=objects/mmdb1 MODULE_ASN=mmdb1.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb2/mmdb2 objects/mmdb3/mmdb3' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb2/mmdb2.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb2 MODULE_PATH=objects/mmdb2 MODULE_ASN=mmdb2.asn MODULE_IMPORT='objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb3/mmdb3' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1/mmdb1.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb2' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb2' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb3 MODULE_PATH=objects/mmdb3 MODULE_ASN=mmdb3.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb2/mmdb2' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1/mmdb1.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb2/mmdb2.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb3' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb3' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mmdb' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb TMPL=mmdb -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mmdb' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb TMPL=mmdb -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mmdb' status=0 ; \ MAKE="/usr/pkg/bin/gmake -w"; \ export MAKE; \ for x in mmdb1 mmdb2 mmdb3; do \ d=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb/../$x ; \ (cd $d && /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh) || status=9 ; \ test -f ${x}__.cpp || \ echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \ test -f ${x}___.cpp || \ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb1 MODULE_PATH=objects/mmdb1 MODULE_ASN=mmdb1.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb2/mmdb2 objects/mmdb3/mmdb3' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb2/mmdb2.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb2 MODULE_PATH=objects/mmdb2 MODULE_ASN=mmdb2.asn MODULE_IMPORT='objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb3/mmdb3' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1/mmdb1.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb2' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb2' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb3 MODULE_PATH=objects/mmdb3 MODULE_ASN=mmdb3.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb2/mmdb2' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1/mmdb1.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb2/mmdb2.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb3' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb3' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mmdb' Updating dependency information for mmdb3___.cpp. Updating dependency information for mmdb2___.cpp. Updating dependency information for mmdb1___.cpp. Updating dependency information for mmdb3__.cpp. Updating dependency information for mmdb2__.cpp. Updating dependency information for mmdb1__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include mmdb1__.cpp -o mmdb1__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include mmdb2__.cpp -o mmdb2__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include mmdb3__.cpp -o mmdb3__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include mmdb1___.cpp -o mmdb1___.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include mmdb2___.cpp -o mmdb2___.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include mmdb3___.cpp -o mmdb3___.o /bin/rm -f libmmdb.a .libmmdb.a.stamp ar cr libmmdb.a mmdb1__.o mmdb2__.o mmdb3__.o mmdb1___.o mmdb2___.o mmdb3___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmmdb.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libmmdb.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libmmdb.a /bin/ln -f .mmdb.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.mmdb.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mmdb' /usr/pkg/bin/gmake -C cn3d -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/cn3d' cd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d && /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh cn3d all Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=cn3d MODULE_PATH=objects/cn3d MODULE_ASN=cn3d.asn MODULE_IMPORT='objects/mmdb1/mmdb1' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1/mmdb1.asn' IMPFILES='objects/mmdb1/mmdb1.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d TMPL=cn3d -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/cn3d' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d TMPL=cn3d -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=cn3d MODULE_PATH=objects/cn3d MODULE_ASN=cn3d.asn MODULE_IMPORT='objects/mmdb1/mmdb1' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1/mmdb1.asn' IMPFILES='objects/mmdb1/mmdb1.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/cn3d' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d/cn3d___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d/cn3d__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d/cn3d__.cpp -o cn3d__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d/cn3d___.cpp -o cn3d___.o /bin/rm -f libcn3d.a .libcn3d.a.stamp ar cr libcn3d.a cn3d__.o cn3d___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcn3d.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libcn3d.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libcn3d.a /bin/ln -f .cn3d.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.cn3d.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/cn3d' /usr/pkg/bin/gmake -C cdd -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/cdd' cd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cdd && /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh cdd all Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=cdd MODULE_PATH=objects/cdd MODULE_ASN=cdd.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seqalign/seqalign objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/scoremat/scoremat' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1/mmdb1.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb2/mmdb2.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb3/mmdb3.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d/cn3d.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat/scoremat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cdd' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cdd' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cdd' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cdd' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cdd TMPL=cdd -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/cdd' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cdd TMPL=cdd -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=cdd MODULE_PATH=objects/cdd MODULE_ASN=cdd.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seqalign/seqalign objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/scoremat/scoremat' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1/mmdb1.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb2/mmdb2.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb3/mmdb3.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d/cn3d.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat/scoremat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cdd' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cdd' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/cdd' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cdd/cdd___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cdd/cdd__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cdd/cdd__.cpp -o cdd__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cdd/cdd___.cpp -o cdd___.o /bin/rm -f libcdd.a .libcdd.a.stamp ar cr libcdd.a cdd__.o cdd___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcdd.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libcdd.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libcdd.a /bin/ln -f .cdd.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.cdd.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/cdd' /usr/pkg/bin/gmake -C ncbimime -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/ncbimime' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/ncbimime/test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/ncbimime/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/ncbimime/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/ncbimime/test/Makefile cd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/ncbimime && /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh ncbimime all Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=ncbimime MODULE_PATH=objects/ncbimime MODULE_ASN=ncbimime.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/cdd/cdd' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1/mmdb1.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb2/mmdb2.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb3/mmdb3.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d/cn3d.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cdd/cdd.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/ncbimime' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/ncbimime' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/ncbimime' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/ncbimime' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/ncbimime TMPL=ncbimime -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/ncbimime' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/ncbimime TMPL=ncbimime -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=ncbimime MODULE_PATH=objects/ncbimime MODULE_ASN=ncbimime.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/cdd/cdd' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1/mmdb1.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb2/mmdb2.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb3/mmdb3.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d/cn3d.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/cdd/cdd.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/ncbimime' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/ncbimime' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/ncbimime' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/ncbimime/ncbimime___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/ncbimime/ncbimime__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/ncbimime/ncbimime__.cpp -o ncbimime__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/ncbimime/ncbimime___.cpp -o ncbimime___.o /bin/rm -f libncbimime.a .libncbimime.a.stamp ar cr libncbimime.a ncbimime__.o ncbimime___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbimime.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbimime.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbimime.a /bin/ln -f .ncbimime.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbimime.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/ncbimime' /usr/pkg/bin/gmake -C test -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/ncbimime/test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/ncbimime/test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/ncbimime' /usr/pkg/bin/gmake -C pcsubstance -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pcsubstance' cd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcsubstance && /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh pcsubstance all Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=pcsubstance MODULE_PATH=objects/pcsubstance MODULE_ASN=pcsubstance.asn MODULE_IMPORT='objects/general/general objects/pub/pub' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcsubstance' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcsubstance' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcsubstance' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcsubstance' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcsubstance TMPL=pcsubstance -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pcsubstance' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcsubstance TMPL=pcsubstance -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=pcsubstance MODULE_PATH=objects/pcsubstance MODULE_ASN=pcsubstance.asn MODULE_IMPORT='objects/general/general objects/pub/pub' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcsubstance' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcsubstance' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pcsubstance' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcsubstance/pcsubstance___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcsubstance/pcsubstance__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcsubstance/pcsubstance__.cpp -o pcsubstance__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcsubstance/pcsubstance___.cpp -o pcsubstance___.o /bin/rm -f libpcsubstance.a .libpcsubstance.a.stamp ar cr libpcsubstance.a pcsubstance__.o pcsubstance___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpcsubstance.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libpcsubstance.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libpcsubstance.a /bin/ln -f .pcsubstance.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.pcsubstance.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pcsubstance' /usr/pkg/bin/gmake -C pcassay -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pcassay' cd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcassay && /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh pcassay all Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=pcassay MODULE_PATH=objects/pcassay MODULE_ASN=pcassay.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcassay' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcassay' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcassay' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcassay' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcassay TMPL=pcassay -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pcassay' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcassay TMPL=pcassay -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=pcassay MODULE_PATH=objects/pcassay MODULE_ASN=pcassay.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcassay' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcassay' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pcassay' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcassay/pcassay___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcassay/pcassay__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcassay/pcassay__.cpp -o pcassay__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pcassay/pcassay___.cpp -o pcassay___.o /bin/rm -f libpcassay.a .libpcassay.a.stamp ar cr libpcassay.a pcassay__.o pcassay___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpcassay.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libpcassay.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libpcassay.a /bin/ln -f .pcassay.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.pcassay.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pcassay' /usr/pkg/bin/gmake -C gbseq -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/gbseq' cd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbseq && /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh gbseq all Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbseq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbseq' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbseq' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbseq' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbseq TMPL=gbseq -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/gbseq' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbseq TMPL=gbseq -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbseq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbseq' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/gbseq' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbseq/gbseq___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbseq/gbseq__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbseq/gbseq__.cpp -o gbseq__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbseq/gbseq___.cpp -o gbseq___.o /bin/rm -f libgbseq.a .libgbseq.a.stamp ar cr libgbseq.a gbseq__.o gbseq___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbseq.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libgbseq.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libgbseq.a /bin/ln -f .gbseq.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.gbseq.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/gbseq' /usr/pkg/bin/gmake -C insdseq -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/insdseq' cd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/insdseq && /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh insdseq all Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=insdseq MODULE_PATH=objects/insdseq MODULE_ASN=insdseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/insdseq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/insdseq' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/insdseq' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/insdseq' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/insdseq TMPL=insdseq -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/insdseq' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/insdseq TMPL=insdseq -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=insdseq MODULE_PATH=objects/insdseq MODULE_ASN=insdseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/insdseq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/insdseq' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/insdseq' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/insdseq/insdseq___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/insdseq/insdseq__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/insdseq/insdseq__.cpp -o insdseq__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/insdseq/insdseq___.cpp -o insdseq___.o /bin/rm -f libinsdseq.a .libinsdseq.a.stamp ar cr libinsdseq.a insdseq__.o insdseq___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libinsdseq.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libinsdseq.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libinsdseq.a /bin/ln -f .insdseq.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.insdseq.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/insdseq' /usr/pkg/bin/gmake -C tinyseq -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/tinyseq' cd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/tinyseq && /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh tinyseq all Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=tinyseq MODULE_PATH=objects/tinyseq MODULE_ASN=tinyseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/tinyseq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/tinyseq' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/tinyseq' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/tinyseq' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/tinyseq TMPL=tinyseq -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/tinyseq' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/tinyseq TMPL=tinyseq -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=tinyseq MODULE_PATH=objects/tinyseq MODULE_ASN=tinyseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/tinyseq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/tinyseq' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/tinyseq' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/tinyseq/tinyseq___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/tinyseq/tinyseq__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/tinyseq/tinyseq__.cpp -o tinyseq__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/tinyseq/tinyseq___.cpp -o tinyseq___.o /bin/rm -f libtinyseq.a .libtinyseq.a.stamp ar cr libtinyseq.a tinyseq__.o tinyseq___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtinyseq.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libtinyseq.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libtinyseq.a /bin/ln -f .tinyseq.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.tinyseq.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/tinyseq' /usr/pkg/bin/gmake -C biotree -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/biotree' cd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biotree && /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh biotree all Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=biotree MODULE_PATH=objects/biotree MODULE_ASN=biotree.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biotree' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biotree' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biotree' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biotree' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biotree TMPL=biotree -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/biotree' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biotree TMPL=biotree -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=biotree MODULE_PATH=objects/biotree MODULE_ASN=biotree.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biotree' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biotree' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/biotree' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biotree/biotree___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biotree/biotree__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biotree/biotree__.cpp -o biotree__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/biotree/biotree___.cpp -o biotree___.o /bin/rm -f libbiotree.a .libbiotree.a.stamp ar cr libbiotree.a biotree__.o biotree___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libbiotree.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libbiotree.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libbiotree.a /bin/ln -f .biotree.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.biotree.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/biotree' /usr/pkg/bin/gmake -C entrezgene -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrezgene' cd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrezgene && /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh entrezgene all Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=entrezgene MODULE_PATH=objects/entrezgene MODULE_ASN=entrezgene.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrezgene' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrezgene' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrezgene' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrezgene' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrezgene TMPL=entrezgene -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrezgene' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrezgene TMPL=entrezgene -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=entrezgene MODULE_PATH=objects/entrezgene MODULE_ASN=entrezgene.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrezgene' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrezgene' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrezgene' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrezgene/entrezgene___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrezgene/entrezgene__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrezgene/entrezgene__.cpp -o entrezgene__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/entrezgene/entrezgene___.cpp -o entrezgene___.o /bin/rm -f libentrezgene.a .libentrezgene.a.stamp ar cr libentrezgene.a entrezgene__.o entrezgene___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrezgene.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libentrezgene.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libentrezgene.a /bin/ln -f .entrezgene.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.entrezgene.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrezgene' /usr/pkg/bin/gmake -C omssa -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/omssa' cd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/omssa && /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh omssa all Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=omssa MODULE_PATH=objects/omssa MODULE_ASN=omssa.asn MODULE_IMPORT='objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/omssa' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/omssa' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/omssa' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/omssa' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/omssa TMPL=omssa -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/omssa' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/omssa TMPL=omssa -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=omssa MODULE_PATH=objects/omssa MODULE_ASN=omssa.asn MODULE_IMPORT='objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/omssa' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/omssa' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/omssa' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/omssa/omssa___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/omssa/omssa__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/omssa/omssa__.cpp -o omssa__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/omssa/omssa___.cpp -o omssa___.o /bin/rm -f libomssa.a .libomssa.a.stamp ar cr libomssa.a omssa__.o omssa___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libomssa.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libomssa.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libomssa.a /bin/ln -f .omssa.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.omssa.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/omssa' /usr/pkg/bin/gmake -C remap -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/remap' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/remap' cd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/remap && /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh remap all Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=remap MODULE_PATH=objects/remap MODULE_ASN=remap.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/remap' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/remap' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/remap' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/remap' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/remap TMPL=remap -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/remap' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/remap TMPL=remapcli -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/remap' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/remap TMPL=remap -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=remap MODULE_PATH=objects/remap MODULE_ASN=remap.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/remap' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/remap' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/remap' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/remap/remap___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/remap/remap__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/remap/remap__.cpp -o remap__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/remap/remap___.cpp -o remap___.o /bin/rm -f libremap.a .libremap.a.stamp ar cr libremap.a remap__.o remap___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libremap.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libremap.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libremap.a /bin/ln -f .remap.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.remap.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/remap' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/remap TMPL=remapcli -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/remap' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/remap/remap_client_.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/remap/remap_client.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/remap/remap_client.cpp -o remap_client.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/remap/remap_client_.cpp -o remap_client_.o /bin/rm -f libremapcli.a .libremapcli.a.stamp ar cr libremapcli.a remap_client.o remap_client_.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libremapcli.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libremapcli.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libremapcli.a /bin/ln -f .remapcli.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.remapcli.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/remap' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/remap' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/remap' /usr/pkg/bin/gmake -C seqtest -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqtest' cd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqtest && /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh seqtest all Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqtest MODULE_PATH=objects/seqtest MODULE_ASN=seqtest.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqtest' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqtest' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqtest' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqtest' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqtest TMPL=seqtest -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqtest' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqtest TMPL=seqtest -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqtest MODULE_PATH=objects/seqtest MODULE_ASN=seqtest.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqtest' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqtest' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqtest' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqtest/seqtest___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqtest/seqtest__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqtest/seqtest__.cpp -o seqtest__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqtest/seqtest___.cpp -o seqtest___.o /bin/rm -f libseqtest.a .libseqtest.a.stamp ar cr libseqtest.a seqtest__.o seqtest___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqtest.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqtest.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libseqtest.a /bin/ln -f .seqtest.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.seqtest.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqtest' /usr/pkg/bin/gmake -C taxon1 -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/taxon1' cd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1 && /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh taxon1 all Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1 TMPL=taxon1 -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/taxon1' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1 TMPL=taxon1 -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/taxon1' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1/ctreecont.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1/utils.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1/cache.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1/taxon1.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1/taxon1___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1/taxon1__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1/taxon1__.cpp -o taxon1__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1/taxon1___.cpp -o taxon1___.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1/taxon1.cpp -o taxon1.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1/cache.cpp -o cache.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1/utils.cpp -o utils.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1/ctreecont.cpp -o ctreecont.o /bin/rm -f libtaxon1.a .libtaxon1.a.stamp ar cr libtaxon1.a taxon1__.o taxon1___.o taxon1.o cache.o utils.o ctreecont.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon1.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libtaxon1.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libtaxon1.a /bin/ln -f .taxon1.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.taxon1.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/taxon1' /usr/pkg/bin/gmake -C taxon3 -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/taxon3' cd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon3 && /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh taxon3 all Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon3' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon3' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon3' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon3' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon3 TMPL=taxon3 -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/taxon3' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon3 TMPL=taxon3 -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon3' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon3' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/taxon3' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon3/taxon3.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon3/taxon3___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon3/taxon3__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon3/taxon3__.cpp -o taxon3__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon3/taxon3___.cpp -o taxon3___.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/taxon3/taxon3.cpp -o taxon3.o /bin/rm -f libtaxon3.a .libtaxon3.a.stamp ar cr libtaxon3.a taxon3__.o taxon3___.o taxon3.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon3.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libtaxon3.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libtaxon3.a /bin/ln -f .taxon3.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.taxon3.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/taxon3' /usr/pkg/bin/gmake -C gbproj -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/gbproj' cd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj && /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh gbproj all Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=gbproj MODULE_PATH=objects/gbproj MODULE_ASN=gbproj.asn MODULE_IMPORT='objects/seq/seq objects/seqloc/seqloc objects/seqset/seqset objects/general/general objects/submit/submit objects/seqalign/seqalign' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/submit/submit.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj TMPL=gbproj -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/gbproj' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj TMPL=gbproj -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=gbproj MODULE_PATH=objects/gbproj MODULE_ASN=gbproj.asn MODULE_IMPORT='objects/seq/seq objects/seqloc/seqloc objects/seqset/seqset objects/general/general objects/submit/submit objects/seqalign/seqalign' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/submit/submit.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj' In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj/gbproj__.cpp:9:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj/ProjectFolder.cpp: In member function 'void ncbi::objects::CProjectFolder::RemoveAllChildItems()': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj/ProjectFolder.cpp:310:27: warning: unused variable 'item' [-Wunused-variable] CProjectItem& item = **it; ^ gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/gbproj' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj/gbproj___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj/gbproj__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj/gbproj__.cpp -o gbproj__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj/gbproj___.cpp -o gbproj___.o /bin/rm -f libgbproj.a .libgbproj.a.stamp ar cr libgbproj.a gbproj__.o gbproj___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbproj.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libgbproj.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libgbproj.a /bin/ln -f .gbproj.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.gbproj.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/gbproj' /usr/pkg/bin/gmake -C trackmgr -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/trackmgr' cd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr && /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh trackmgr all Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=trackmgr MODULE_PATH=objects/trackmgr MODULE_ASN=trackmgr.asn MODULE_IMPORT='objects/seqloc/seqloc objects/general/general' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqloc/seqloc.asn objects/general/general.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr TMPL=trackmgr -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr TMPL=trackmgrcli -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr TMPL=trackmgrgridcli -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr TMPL=trackmgr -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=trackmgr MODULE_PATH=objects/trackmgr MODULE_ASN=trackmgr.asn MODULE_IMPORT='objects/seqloc/seqloc objects/general/general' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqloc/seqloc.asn objects/general/general.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/trackmgr' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/trackmgr___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/trackmgr__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/trackmgr__.cpp -o trackmgr__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/trackmgr___.cpp -o trackmgr___.o /bin/rm -f libtrackmgr.a .libtrackmgr.a.stamp ar cr libtrackmgr.a trackmgr__.o trackmgr___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgr.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libtrackmgr.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libtrackmgr.a /bin/ln -f .trackmgr.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.trackmgr.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr TMPL=trackmgrcli -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/trackmgr' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/trackmgr_client_.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/trackmgr_client.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/trackmgr_client.cpp -o trackmgr_client.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/trackmgr_client_.cpp -o trackmgr_client_.o /bin/rm -f libtrackmgrcli.a .libtrackmgrcli.a.stamp ar cr libtrackmgrcli.a trackmgr_client.o trackmgr_client_.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgrcli.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libtrackmgrcli.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libtrackmgrcli.a /bin/ln -f .trackmgrcli.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.trackmgrcli.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr TMPL=trackmgrgridcli -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/trackmgr' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/supported_assemblies_client.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/createtrackset_client.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/trackset_client.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/track_attrvalue_client.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/switch_context_client.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/item_resolver_client.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/removeusertrack_client.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/createusertrack_client.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/displaytrack_client.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/blast_client.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/tms_exception.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/tms_exception.cpp -o tms_exception.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/blast_client.cpp -o blast_client.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/displaytrack_client.cpp -o displaytrack_client.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/createusertrack_client.cpp -o createusertrack_client.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/removeusertrack_client.cpp -o removeusertrack_client.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/item_resolver_client.cpp -o item_resolver_client.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/switch_context_client.cpp -o switch_context_client.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/track_attrvalue_client.cpp -o track_attrvalue_client.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/trackset_client.cpp -o trackset_client.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/createtrackset_client.cpp -o createtrackset_client.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/supported_assemblies_client.cpp -o supported_assemblies_client.o /bin/rm -f libtrackmgrgridcli.a .libtrackmgrgridcli.a.stamp ar cr libtrackmgrgridcli.a tms_exception.o blast_client.o displaytrack_client.o createusertrack_client.o removeusertrack_client.o item_resolver_client.o switch_context_client.o track_attrvalue_client.o trackset_client.o createtrackset_client.o supported_assemblies_client.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgrgridcli.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libtrackmgrgridcli.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libtrackmgrgridcli.a /bin/ln -f .trackmgrgridcli.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.trackmgrgridcli.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/pkg/bin/gmake -C valerr -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/valerr' cd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valerr && /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh valerr all Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valerr' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valerr' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valerr' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valerr' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valerr TMPL=valerr -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/valerr' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valerr TMPL=valerr -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valerr' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valerr' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/valerr' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valerr/valerr___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valerr/valerr__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valerr/valerr__.cpp -o valerr__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valerr/valerr___.cpp -o valerr___.o /bin/rm -f libvalerr.a .libvalerr.a.stamp ar cr libvalerr.a valerr__.o valerr___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalerr.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libvalerr.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libvalerr.a /bin/ln -f .valerr.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.valerr.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/valerr' /usr/pkg/bin/gmake -C valid -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/valid' cd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valid && /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh valid all Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valid' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valid' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valid' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valid' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valid TMPL=valid -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/valid' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valid TMPL=valid -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valid' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valid' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/valid' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valid/valid___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valid/valid__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valid/valid__.cpp -o valid__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/valid/valid___.cpp -o valid___.o /bin/rm -f libvalid.a .libvalid.a.stamp ar cr libvalid.a valid__.o valid___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalid.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libvalid.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libvalid.a /bin/ln -f .valid.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.valid.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/valid' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/valid' /usr/pkg/bin/gmake -C access -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/access' cd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/access && /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh access all Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=access MODULE_PATH=objects/access MODULE_ASN=access.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/access' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/access' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/access' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/access' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/access TMPL=access -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/access' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/access TMPL=access -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=access MODULE_PATH=objects/access MODULE_ASN=access.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/access' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/access' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/access' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/access/access___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/access/access__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/access/access__.cpp -o access__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/access/access___.cpp -o access___.o /bin/rm -f libaccess.a .libaccess.a.stamp ar cr libaccess.a access__.o access___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libaccess.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libaccess.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libaccess.a /bin/ln -f .access.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.access.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/access' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/access' /usr/pkg/bin/gmake -C docsum -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/docsum' cd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/docsum && /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh docsum all Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=docsum MODULE_PATH=objects/docsum MODULE_ASN=docsum.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/docsum' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/docsum' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/docsum' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/docsum' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/docsum TMPL=docsum -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/docsum' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/docsum TMPL=docsum -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=docsum MODULE_PATH=objects/docsum MODULE_ASN=docsum.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/docsum' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/docsum' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/docsum' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/docsum/docsum___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/docsum/docsum__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/docsum/docsum__.cpp -o docsum__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/docsum/docsum___.cpp -o docsum___.o /bin/rm -f libdocsum.a .libdocsum.a.stamp ar cr libdocsum.a docsum__.o docsum___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdocsum.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libdocsum.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libdocsum.a /bin/ln -f .docsum.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.docsum.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/docsum' /usr/pkg/bin/gmake -C featdef -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/featdef' cd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/featdef && /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh featdef all Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=featdef MODULE_PATH=objects/featdef MODULE_ASN=featdef.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/featdef' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/featdef' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/featdef' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/featdef' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/featdef TMPL=featdef -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/featdef' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/featdef TMPL=featdef -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=featdef MODULE_PATH=objects/featdef MODULE_ASN=featdef.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/featdef' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/featdef' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/featdef' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/featdef/featdef___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/featdef/featdef__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/featdef/featdef__.cpp -o featdef__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/featdef/featdef___.cpp -o featdef___.o /bin/rm -f libfeatdef.a .libfeatdef.a.stamp ar cr libfeatdef.a featdef__.o featdef___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libfeatdef.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libfeatdef.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libfeatdef.a /bin/ln -f .featdef.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.featdef.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/featdef' /usr/pkg/bin/gmake -C genomecoll -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genomecoll' cd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll && /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh genome_collection all Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll' cd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll && /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh gencoll_client all Waiting for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/make_asn.lock/usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll' . Acquired /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/make_asn.lock for PID 1983 (make_asn) Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA -oc gencoll_client -or objects/genomecoll -odi -od gencoll_client.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd gencoll_client.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll TMPL=genome_collection -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll TMPL=gencoll_client -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll TMPL=genome_collection -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA -oc gencoll_client -or objects/genomecoll -odi -od gencoll_client.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd gencoll_client.dump datatool: 2.17.0 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genomecoll' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/genome_collection___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/genome_collection__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/genome_collection__.cpp -o genome_collection__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/genome_collection___.cpp -o genome_collection___.o /bin/rm -f libgenome_collection.a .libgenome_collection.a.stamp ar cr libgenome_collection.a genome_collection__.o genome_collection___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenome_collection.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libgenome_collection.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libgenome_collection.a /bin/ln -f .genome_collection.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.genome_collection.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll TMPL=gencoll_client -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genomecoll' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/cached_assembly.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/genomic_collections_cli_.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/gencoll_client___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/gencoll_client__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/gencoll_client__.cpp -o gencoll_client__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/gencoll_client___.cpp -o gencoll_client___.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp -o genomic_collections_cli.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/genomic_collections_cli_.cpp -o genomic_collections_cli_.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/cached_assembly.cpp -o cached_assembly.o /bin/rm -f libgencoll_client.a .libgencoll_client.a.stamp ar cr libgencoll_client.a gencoll_client__.o gencoll_client___.o genomic_collections_cli.o genomic_collections_cli_.o cached_assembly.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgencoll_client.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libgencoll_client.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libgencoll_client.a /bin/ln -f .gencoll_client.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.gencoll_client.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/pkg/bin/gmake -C gc_cli -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/gc_cli TMPL=gc_cli -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/gc_cli/gc_cli.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/gc_cli/gc_cli.cpp -o gc_cli.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O gc_cli.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lgencoll_client-static -lgenome_collection-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxconnect-static -lxcompress-static -lxutil-static -lxncbi-static -lz -lbz2 -llzo2 -lgnutls -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lgcrypt -lgpg-error -lz -lz -lm -lpthread -o gc_cli strip gc_cli /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f gc_cli /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f gc_cli /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/gc_cli gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/pkg/bin/gmake -C homologene -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/homologene' cd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/homologene && /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh homologene all Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=homologene MODULE_PATH=objects/homologene MODULE_ASN=homologene.asn MODULE_IMPORT='objects/general/general objects/seqalign/seqalign objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/homologene' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/homologene' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/homologene' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/homologene' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/homologene TMPL=homologene -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/homologene' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/homologene TMPL=homologene -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=homologene MODULE_PATH=objects/homologene MODULE_ASN=homologene.asn MODULE_IMPORT='objects/general/general objects/seqalign/seqalign objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/homologene' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/homologene' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/homologene' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/homologene/homologene___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/homologene/homologene__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/homologene/homologene__.cpp -o homologene__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/homologene/homologene___.cpp -o homologene___.o /bin/rm -f libhomologene.a .libhomologene.a.stamp ar cr libhomologene.a homologene__.o homologene___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libhomologene.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libhomologene.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libhomologene.a /bin/ln -f .homologene.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.homologene.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/homologene' /usr/pkg/bin/gmake -C mim -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mim' cd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mim && /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh mim all Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=mim MODULE_PATH=objects/mim MODULE_ASN=mim.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mim' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mim' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mim' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mim' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mim TMPL=mim -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mim' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mim TMPL=mim -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=mim MODULE_PATH=objects/mim MODULE_ASN=mim.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mim' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mim' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mim' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mim/mim___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mim/mim__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mim/mim__.cpp -o mim__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/mim/mim___.cpp -o mim___.o /bin/rm -f libmim.a .libmim.a.stamp ar cr libmim.a mim__.o mim___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmim.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libmim.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libmim.a /bin/ln -f .mim.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.mim.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mim' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mim' /usr/pkg/bin/gmake -C objprt -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/objprt' cd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/objprt && /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh objprt all Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=objprt MODULE_PATH=objects/objprt MODULE_ASN=objprt.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/objprt' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/objprt' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/objprt' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/objprt' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/objprt TMPL=objprt -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/objprt' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/objprt TMPL=objprt -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=objprt MODULE_PATH=objects/objprt MODULE_ASN=objprt.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/objprt' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/objprt' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/objprt' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/objprt/objprt___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/objprt/objprt__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/objprt/objprt__.cpp -o objprt__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/objprt/objprt___.cpp -o objprt___.o /bin/rm -f libobjprt.a .libobjprt.a.stamp ar cr libobjprt.a objprt__.o objprt___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libobjprt.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libobjprt.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libobjprt.a /bin/ln -f .objprt.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.objprt.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/objprt' /usr/pkg/bin/gmake -C variation -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/variation' cd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/variation && /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh variation all Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/variation' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA -oc variation -or objects/variation -odi -od variation.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd variation.dump datatool: 2.17.0 gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/variation' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/variation' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/variation' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/variation TMPL=variation -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/variation' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/variation TMPL=variation -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/variation' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA -oc variation -or objects/variation -odi -od variation.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd variation.dump datatool: 2.17.0 gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/variation' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/variation' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/variation/variation___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/variation/variation__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/variation/variation__.cpp -o variation__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/variation/variation___.cpp -o variation___.o /bin/rm -f libvariation.a .libvariation.a.stamp ar cr libvariation.a variation__.o variation___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvariation.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libvariation.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libvariation.a /bin/ln -f .variation.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.variation.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/variation' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/variation' /usr/pkg/bin/gmake -C macro -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/macro' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/unit_test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/unit_test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/unit_test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/macro/unit_test/Makefile cd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro && /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh macro all Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro TMPL=macro -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/macro' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro TMPL=macro -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro' In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:129:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/Replace_func.cpp: In function 'bool ncbi::objects::s_WholeWordReplaceNocase(std::string&, const string&, const string&)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/Replace_func.cpp:61:84: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(val, find, 0, string::npos, NStr::eFirst, NStr::eNocase); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37:0, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:2: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:5473:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:129:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/Replace_func.cpp:74:103: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pos = NStr::Find(val, find, pos + repl.length(), string::npos, NStr::eFirst, NStr::eNocase); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37:0, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:2: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:5473:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:129:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/Replace_func.cpp:76:91: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pos = NStr::Find(val, find, pos + 1, string::npos, NStr::eFirst, NStr::eNocase); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37:0, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:2: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:5473:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:129:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/Replace_func.cpp: In function 'bool ncbi::objects::s_ReplaceNocase(std::string&, const string&, const string&)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/Replace_func.cpp:88:84: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(val, find, 0, string::npos, NStr::eFirst, NStr::eNocase); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37:0, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:2: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:5473:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:129:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/Replace_func.cpp:99:99: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pos = NStr::Find(val, find, pos + repl.length(), string::npos, NStr::eFirst, NStr::eNocase); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37:0, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:2: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:5473:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:158:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/String_constraint.cpp: In member function 'bool ncbi::objects::CString_constraint::x_DoesSingleStringMatchConstraint(const string&) const': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/String_constraint.cpp:610:86: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pFound = NStr::Find(search, pattern, 0, NPOS, NStr::eFirst, case_sens); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37:0, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:2: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:5473:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:158:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/String_constraint.cpp:620:103: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pFound = NStr::Find(search, pattern, pFound + 1, NPOS, NStr::eFirst, case_sens); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37:0, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:2: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:5473:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:158:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/String_constraint.cpp:639:103: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pFound = NStr::Find(search, pattern, pFound + 1, NPOS, NStr::eFirst, case_sens); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37:0, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:2: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:5473:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:158:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/String_constraint.cpp:647:86: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pFound = NStr::Find(pattern, search, 0, NPOS, NStr::eFirst, case_sens); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37:0, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:2: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:5473:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:158:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/String_constraint.cpp:653:113: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pFound = NStr::Find(pattern.substr(pFound + 1), search, 0, NPOS, NStr::eFirst, case_sens); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37:0, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:2: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:5473:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^ gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/macro' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp -o macro__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro___.cpp -o macro___.o /bin/rm -f libmacro.a .libmacro.a.stamp ar cr libmacro.a macro__.o macro___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmacro.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libmacro.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libmacro.a /bin/ln -f .macro.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.macro.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/macro' /usr/pkg/bin/gmake -C unit_test -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/macro/unit_test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/macro/unit_test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/macro' /usr/pkg/bin/gmake -C genesbyloc -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genesbyloc' cd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genesbyloc && /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh genesbyloc all Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=genesbyloc MODULE_PATH=objects/genesbyloc MODULE_ASN=genesbyloc.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genesbyloc' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genesbyloc' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genesbyloc' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genesbyloc' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genesbyloc TMPL=genesbyloc -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genesbyloc' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genesbyloc TMPL=genesbyloc -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=genesbyloc MODULE_PATH=objects/genesbyloc MODULE_ASN=genesbyloc.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genesbyloc' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genesbyloc' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genesbyloc' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genesbyloc/genesbyloc___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genesbyloc/genesbyloc__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genesbyloc/genesbyloc__.cpp -o genesbyloc__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/genesbyloc/genesbyloc___.cpp -o genesbyloc___.o /bin/rm -f libgenesbyloc.a .libgenesbyloc.a.stamp ar cr libgenesbyloc.a genesbyloc__.o genesbyloc___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenesbyloc.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libgenesbyloc.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libgenesbyloc.a /bin/ln -f .genesbyloc.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.genesbyloc.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genesbyloc' /usr/pkg/bin/gmake -C coords -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/coords' cd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/coords && /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh objcoords all Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=objcoords MODULE_PATH=objects/coords MODULE_ASN=objcoords.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/coords' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m objcoords.asn -M "" -oA -oc objcoords -or objects/coords -odi -od objcoords.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd objcoords.dump datatool: 2.17.0 gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/coords' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/coords' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/coords' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/coords TMPL=objcoords -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/coords' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/coords TMPL=objcoords -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=objcoords MODULE_PATH=objects/coords MODULE_ASN=objcoords.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/coords' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m objcoords.asn -M "" -oA -oc objcoords -or objects/coords -odi -od objcoords.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd objcoords.dump datatool: 2.17.0 gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/coords' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/coords' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/coords/objcoords___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/coords/objcoords__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/coords/objcoords__.cpp -o objcoords__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/coords/objcoords___.cpp -o objcoords___.o /bin/rm -f libobjcoords.a .libobjcoords.a.stamp ar cr libobjcoords.a objcoords__.o objcoords___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libobjcoords.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libobjcoords.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libobjcoords.a /bin/ln -f .objcoords.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.objcoords.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/coords' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/coords' /usr/pkg/bin/gmake -C varrep -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/varrep' cd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/varrep && /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh varrep all Platform not defined for NetBSD macppc -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=varrep MODULE_PATH=objects/varrep MODULE_ASN=varrep.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/varrep' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m varrep.asn -M "" -oA -oc varrep -or objects/varrep -odi -od varrep.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd varrep.dump datatool: 2.17.0 gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/varrep' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/varrep' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/varrep' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/varrep TMPL=varrep -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/varrep' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/varrep TMPL=varrep -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=varrep MODULE_PATH=objects/varrep MODULE_ASN=varrep.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/varrep' /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++ -opm /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src -m varrep.asn -M "" -oA -oc varrep -or objects/varrep -odi -od varrep.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd varrep.dump datatool: 2.17.0 gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/varrep' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/varrep' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/varrep/varrep___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/varrep/varrep__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/varrep/varrep__.cpp -o varrep__.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objects/varrep/varrep___.cpp -o varrep___.o /bin/rm -f libvarrep.a .libvarrep.a.stamp ar cr libvarrep.a varrep__.o varrep___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvarrep.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libvarrep.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libvarrep.a /bin/ln -f .varrep.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.varrep.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/varrep' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/varrep' gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects' /usr/pkg/bin/gmake -C objmgr -w all_r || exit 5 gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr/test/Makefile /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr TMPL=objmgr -w export-headers gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr' gmake[3]: Nothing to be done for 'export-headers'. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr TMPL=objmgr -w all gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/seq_id_sort.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/split_parser.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/gc_assembly_parser.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/annot_finder.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/edits_db_saver.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/edits_db_engine.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/unsupp_editsaver.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/edit_saver.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/bioseq_set_edit_commands.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/seq_entry_edit_commands.cpp. Updating dependency information for 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Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/seq_descr_ci.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/annot_selector.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/seq_loc_cvt.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/annot_types_ci.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/snp_annot_info.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/seq_map_switch.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/table_field.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/seq_annot_info.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/seq_table_info.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/seq_table_setters.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/seq_table_setters.cpp -o seq_table_setters.o 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-I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/edit_saver.cpp -o edit_saver.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/unsupp_editsaver.cpp -o unsupp_editsaver.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/edits_db_engine.cpp -o edits_db_engine.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/edits_db_saver.cpp -o edits_db_saver.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/annot_finder.cpp -o annot_finder.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/gc_assembly_parser.cpp -o gc_assembly_parser.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/split_parser.cpp -o split_parser.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/seq_id_sort.cpp -o seq_id_sort.o /bin/rm -f libxobjmgr.a .libxobjmgr.a.stamp ar cr libxobjmgr.a seq_table_setters.o seq_table_info.o seq_annot_info.o table_field.o seq_map_switch.o snp_annot_info.o annot_types_ci.o seq_loc_cvt.o annot_selector.o seq_descr_ci.o feat_ci.o graph_ci.o annot_object.o annot_object_index.o annot_ci.o tse_info.o tse_info_object.o seq_entry_info.o bioseq_base_info.o bioseq_set_info.o bioseq_info.o data_source.o priority.o prefetch_impl.o prefetch_manager.o prefetch_manager_impl.o prefetch_actions.o scope.o heap_scope.o scope_impl.o scope_info.o tse_handle.o seq_map.o seq_map_ci.o seq_entry_ci.o seq_annot_ci.o seq_table_ci.o seq_entry_handle.o bioseq_set_handle.o bioseq_handle.o seq_annot_handle.o align_ci.o data_loader.o handle_range.o objmgr_exception.o handle_range_map.o object_manager.o seq_vector.o seq_vector_ci.o seqdesc_ci.o tse_split_info.o tse_chunk_info.o bioseq_ci.o annot_type_index.o seq_loc_mapper.o seq_align_mapper.o annot_collector.o data_loader_factory.o mapped_feat.o seq_feat_handle.o seq_graph_handle.o seq_align_handle.o tse_assigner.o scope_transaction.o scope_transaction_impl.o edit_commands_impl.o bioseq_edit_commands.o seq_entry_edit_commands.o bioseq_set_edit_commands.o edit_saver.o unsupp_editsaver.o edits_db_engine.o edits_db_saver.o annot_finder.o gc_assembly_parser.o split_parser.o seq_id_sort.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjmgr.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxobjmgr.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxobjmgr.a /bin/ln -f .xobjmgr.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xobjmgr.dep gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr' /usr/pkg/bin/gmake -C test -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr/test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr/test' /usr/pkg/bin/gmake -C util -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr/util' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/unit_test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/unit_test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/unit_test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr/util/unit_test/Makefile /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util TMPL=util -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr/util' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util TMPL=util -w all /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/feature.cpp: In function 'ncbi::objects::feature::ELocationInFrame ncbi::objects::feature::IsLocationInFrame(const ncbi::objects::CSeq_feat_Handle&, const ncbi::objects::CSeq_loc&)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/feature.cpp:3391:89: warning: 'ncbi::objects::sequence::ECompare ncbi::objects::sequence::Compare(const ncbi::objects::CSeq_loc&, const ncbi::objects::CSeq_loc&, ncbi::objects::CScope*)' is deprecated [-Wdeprecated-declarations] sequence::ECompare cmp = sequence::Compare(cds.GetLocation(), loc, &(cds.GetScope())); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objmgr/util/feature.hpp:39:0, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/feature.cpp:84: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objmgr/util/seq_loc_util.hpp:200:20: note: declared here sequence::ECompare Compare(const CSeq_loc& loc1, ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/indexer.cpp: In member function 'void ncbi::objects::CBioseqIndex::x_InitFeats()': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/indexer.cpp:1030:20: warning: variable 'sgx' set but not used [-Wunused-but-set-variable] CGapIndex* sgx = NULL; ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/indexer.cpp:42:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objmgr/util/indexer.hpp: In constructor 'ncbi::objects::CGapIndex::CGapIndex(ncbi::TSeqPos, ncbi::TSeqPos, ncbi::TSeqPos, const string&, const std::vector >&, bool, bool, ncbi::objects::CBioseqIndex&)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objmgr/util/indexer.hpp:576:10: warning: 'ncbi::objects::CGapIndex::m_IsAssemblyGap' will be initialized after [-Wreorder] bool m_IsAssemblyGap; ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objmgr/util/indexer.hpp:566:28: warning: 'ncbi::CWeakRef ncbi::objects::CGapIndex::m_Bsx' [-Wreorder] CWeakRef m_Bsx; ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/indexer.cpp:1362:1: warning: when initialized here [-Wreorder] CGapIndex::CGapIndex (TSeqPos start, ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/indexer.cpp: In function 'int ncbi::objects::SkipMixedContent(const char*)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/indexer.cpp:1835:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < sizeof (mixedTags); i++) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/indexer.cpp: In member function 'void ncbi::objects::CWordPairIndexer::PopulateWordPairIndex(std::string)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/indexer.cpp:1912:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < str.length(); i++) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/create_defline.cpp: In function 'bool x_EndsWithStrain(const ncbi::CTempString&, const ncbi::CTempString&)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/create_defline.cpp:1137:80: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::FindNoCase(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence)' is deprecated [-Wdeprecated-declarations] pos = NStr::FindNoCase (taxname, strain, 0, taxname.size() - 1, NStr::eLast); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37:0, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/util/strsearch.hpp:45, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objmgr/util/create_defline.hpp:37, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/create_defline.cpp:35: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:2082:22: note: declared here static SIZE_TYPE FindNoCase(const CTempString str, ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/create_defline.cpp: In function 'std::string s_RemoveBracketedOrgFromEnd(std::string, std::string)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/create_defline.cpp:1716:61: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] SIZE_TYPE cp = NStr::Find(str, "[", 0, NPOS, NStr::eLast); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37:0, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/util/strsearch.hpp:45, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objmgr/util/create_defline.hpp:37, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/create_defline.cpp:35: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:5473:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/create_defline.cpp: In member function 'void ncbi::objects::sequence::CDeflineGenerator::x_SetTitleFromProteinIdx(const ncbi::objects::CBioseq_Handle&)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/create_defline.cpp:1782:38: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (offset > 0 && offset < m_MainTitle.length()) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/create_defline.cpp: In member function 'void ncbi::objects::sequence::CDeflineGenerator::x_SetTitleFromProtein(const ncbi::objects::CBioseq_Handle&)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/create_defline.cpp:1980:38: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (offset > 0 && offset < m_MainTitle.length()) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/create_defline.cpp: In function 'size_t s_TitleEndsInOrganism(std::string&, ncbi::CTempString)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/create_defline.cpp:2595:68: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::FindNoCase(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence)' is deprecated [-Wdeprecated-declarations] pos = NStr::FindNoCase(title, taxname, 0, NPOS, NStr::eLast); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37:0, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/util/strsearch.hpp:45, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objmgr/util/create_defline.hpp:37, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/create_defline.cpp:35: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:2082:22: note: declared here static SIZE_TYPE FindNoCase(const CTempString str, ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/create_defline.cpp:2596:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (pos == idx + 2) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/create_defline.cpp: In member function 'void ncbi::objects::sequence::CDeflineGenerator::x_AdjustProteinTitleSuffix(const ncbi::objects::CBioseq_Handle&)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/create_defline.cpp:2654:83: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::FindNoCase(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence)' is deprecated [-Wdeprecated-declarations] pos = NStr::FindNoCase(m_MainTitle, "][", 0, NPOS, NStr::eLast); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37:0, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/util/strsearch.hpp:45, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objmgr/util/create_defline.hpp:37, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/create_defline.cpp:35: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:2082:22: note: declared here static SIZE_TYPE FindNoCase(const CTempString str, ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/create_defline.cpp: In member function 'std::string ncbi::objects::sequence::CDeflineGenerator::GenerateDefline(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::CDeflineGenerator::TUserFlags)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/create_defline.cpp:2981:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < sizeof (s_tpaPrefixList) / sizeof (const char*); i++) { ^ gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr/util' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/autodef_options.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/autodef_feature_clause.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/autodef_source_group.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/autodef_mod_combo.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/autodef_available_modifier.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/autodef_source_desc.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/autodef.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/feature_edit.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/objutil.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/seq_trimmer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/seq_align_util.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/seq_loc_util.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/obj_sniff.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/create_defline.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/seqtitle.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/indexer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/feature.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/sequence.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/weight.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/weight.cpp -o weight.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/sequence.cpp -o sequence.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/feature.cpp -o feature.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/indexer.cpp -o indexer.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/seqtitle.cpp -o seqtitle.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/create_defline.cpp -o create_defline.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/obj_sniff.cpp -o obj_sniff.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/seq_loc_util.cpp -o seq_loc_util.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7./tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/objutil.cpp: In instantiation of 'bool ncbi::objects::{anonymous}::s_IsTagStart(const _T&, const _T&) [with _T = const char*]': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/objutil.cpp:1805:81: required from here /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/objutil.cpp:1733:57: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int possible_str_idx = 0; possible_str_idx < num_possible_tag_starts; ++possible_str_idx) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/autodef_feature_clause.cpp: In member function 'bool ncbi::objects::CAutoDefFeatureClause::x_GetExonDescription(std::string&)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/autodef_feature_clause.cpp:725:28: warning: unused variable 'subtype' [-Wunused-variable] CSeqFeatData::ESubtype subtype = m_MainFeat.GetData().GetSubtype(); ^ 1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/seq_align_util.cpp -o seq_align_util.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/seq_trimmer.cpp -o seq_trimmer.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp -o bioseqgaps_ci.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/objutil.cpp -o objutil.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/feature_edit.cpp -o feature_edit.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/autodef.cpp -o autodef.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp -o autodef_feature_clause_base.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/autodef_source_desc.cpp -o autodef_source_desc.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/autodef_available_modifier.cpp -o autodef_available_modifier.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/autodef_mod_combo.cpp -o autodef_mod_combo.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/autodef_source_group.cpp -o autodef_source_group.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/autodef_feature_clause.cpp -o autodef_feature_clause.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/autodef_options.cpp -o autodef_options.o /bin/rm -f libxobjutil.a .libxobjutil.a.stamp ar cr libxobjutil.a weight.o sequence.o feature.o indexer.o seqtitle.o create_defline.o obj_sniff.o seq_loc_util.o seq_align_util.o seq_trimmer.o bioseqgaps_ci.o objutil.o feature_edit.o autodef.o autodef_feature_clause_base.o autodef_source_desc.o autodef_available_modifier.o autodef_mod_combo.o autodef_source_group.o autodef_feature_clause.o autodef_options.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjutil.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxobjutil.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxobjutil.a /bin/ln -f .xobjutil.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xobjutil.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr/util' /usr/pkg/bin/gmake -C unit_test -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr/util/unit_test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr/util/unit_test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr/util' /usr/pkg/bin/gmake -C split -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr/split' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/split TMPL=id2_split -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr/split' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/split TMPL=id2_split -w all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr/split' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/split_exceptions.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/size.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/chunk_info.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/annot_piece.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/asn_sizer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/object_splitinfo.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/id_range.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/blob_splitter_maker.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/blob_splitter_parser.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/blob_splitter_impl.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/split_blob.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/blob_splitter_params.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/blob_splitter.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/blob_splitter.cpp -o blob_splitter.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/blob_splitter_params.cpp -o blob_splitter_params.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/split_blob.cpp -o split_blob.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/blob_splitter_impl.cpp -o blob_splitter_impl.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/blob_splitter_parser.cpp -o blob_splitter_parser.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/blob_splitter_maker.cpp -o blob_splitter_maker.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/id_range.cpp -o id_range.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/object_splitinfo.cpp -o object_splitinfo.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/asn_sizer.cpp -o asn_sizer.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/annot_piece.cpp -o annot_piece.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/chunk_info.cpp -o chunk_info.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/size.cpp -o size.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/split_exceptions.cpp -o split_exceptions.o /bin/rm -f libid2_split.a .libid2_split.a.stamp ar cr libid2_split.a blob_splitter.o blob_splitter_params.o split_blob.o blob_splitter_impl.o blob_splitter_parser.o blob_splitter_maker.o id_range.o object_splitinfo.o asn_sizer.o annot_piece.o chunk_info.o size.o split_exceptions.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2_split.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libid2_split.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libid2_split.a /bin/ln -f .id2_split.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.id2_split.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr' /usr/pkg/bin/gmake -C objtools -w all_r || exit 5 gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/unit_test_util/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/unit_test_util/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/unit_test_util/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT unit_test_util/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/unit_test_util/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/lds2/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/lds2/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/lds2/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT lds2/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/lds2/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/cddalignview/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/cddalignview/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/cddalignview/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT cddalignview/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/cddalignview/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/test/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/manip/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/manip/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/manip/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT manip/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/manip/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/validator/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/validator/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/validator/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT validator/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/validator/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/asniotest/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/asniotest/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/asniotest/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT asniotest/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/asniotest/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/align/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/align/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/align/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT align/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/align/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/eutils/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/eutils/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/eutils/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT eutils/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/eutils/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/snputil/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/snputil/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/snputil/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT snputil/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/snputil/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/uudutil/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/uudutil/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/uudutil/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT uudutil/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/uudutil/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/variation/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/variation/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/variation/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT variation/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/variation/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/writers/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/writers/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/writers/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT writers/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/writers/Makefile /usr/pkg/bin/gmake -C unit_test_util -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/unit_test_util' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/unit_test_util' /usr/pkg/bin/gmake -C readers -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/readers' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/app/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/app/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/app/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT app/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/readers/app/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/readers/test/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/unit_test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/unit_test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/unit_test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/readers/unit_test/Makefile /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers TMPL=xobjread -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/readers' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers TMPL=xobjreadex -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/readers' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers TMPL=xobjread -w all /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/agp_read.cpp: In function 'ncbi::CRef ncbi::AgpRead(ncbi::CNcbiIstream&, ncbi::EAgpRead_IdRule, bool, std::vector >*)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/agp_read.cpp:58:74: warning: 'void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)' is deprecated [-Wdeprecated-declarations] AgpRead(is, entries, component_id_rule, set_gap_data, component_types); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/agp_read.cpp:33:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/agp_read.hpp:61:6: note: declared here void AgpRead(CNcbiIstream& is, ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/agp_read.cpp: In function 'void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/agp_read.cpp:74:74: warning: 'void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)' is deprecated [-Wdeprecated-declarations] AgpRead(is, bioseqs, component_id_rule, set_gap_data, component_types); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/agp_read.cpp:33:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/agp_read.hpp:52:6: note: declared here void AgpRead(CNcbiIstream& is, ^ gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/readers' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/line_error.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/message_listener.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/struct_cmt_reader.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/ucscregion_reader.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/agp_converter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta_exception.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/source_mod_parser.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/best_feat_finder.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/vcf_reader.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gvf_reader.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gff2_reader.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gff2_data.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gtf_reader.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gff3_reader.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gff3_sofa.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/wiggle_reader.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/rm_reader.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/readfeat.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/reader_base.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/phrap.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/microarray_reader.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/reader_data.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/track_data.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gff_reader.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/getfeature.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta_reader_utils.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta_aln_builder.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/cigar.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/bed_reader.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/aln_reader.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/agp_validate_reader.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/agp_util.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/agp_seq_entry.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/agp_read.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/acc_pattern.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/format_guess_ex.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/read_util.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/read_util.cpp -o read_util.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/format_guess_ex.cpp -o format_guess_ex.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/acc_pattern.cpp -o acc_pattern.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/agp_read.cpp -o agp_read.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biolo/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/aln_reader.cpp: In member function 'bool ncbi::CAlnReader::x_IsGap(ncbi::CAlnReader::TNumrow, ncbi::TSeqPos, const string&)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/aln_reader.cpp:409:13: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (row > m_MiddleSections.size()) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp: In constructor 'ncbi::objects::CFastaReader::CFastaReader(ncbi::ILineReader&, ncbi::objects::CFastaReader::TFlags)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:224:29: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] m_MaxIDLength(kMax_UI4) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:372:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:224:29: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] m_MaxIDLength(kMax_UI4) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:372:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:224:29: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] m_MaxIDLength(kMax_UI4) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:372:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:224:29: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] m_MaxIDLength(kMax_UI4) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:372:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:224:29: warning: 'ncbi::objects::CFastaReader::m_ExpectedEnd' is deprecated [-Wdeprecated-declarations] m_MaxIDLength(kMax_UI4) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:377:29: note: declared here NCBI_DEPRECATED TSeqPos m_ExpectedEnd; ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:224:29: warning: 'ncbi::objects::CFastaReader::m_ExpectedEnd' is deprecated [-Wdeprecated-declarations] m_MaxIDLength(kMax_UI4) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:377:29: note: declared here NCBI_DEPRECATED TSeqPos m_ExpectedEnd; ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp: In constructor 'ncbi::objects::CFastaReader::CFastaReader(ncbi::CNcbiIstream&, ncbi::objects::CFastaReader::TFlags)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:234:29: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] m_MaxIDLength(kMax_UI4) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:372:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:234:29: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] m_MaxIDLength(kMax_UI4) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:372:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:234:29: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] m_MaxIDLength(kMax_UI4) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:372:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:234:29: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] m_MaxIDLength(kMax_UI4) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:372:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:234:29: warning: 'ncbi::objects::CFastaReader::m_ExpectedEnd' is deprecated [-Wdeprecated-declarations] m_MaxIDLength(kMax_UI4) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:377:29: note: declared here NCBI_DEPRECATED TSeqPos m_ExpectedEnd; ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:234:29: warning: 'ncbi::objects::CFastaReader::m_ExpectedEnd' is deprecated [-Wdeprecated-declarations] m_MaxIDLength(kMax_UI4) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:377:29: note: declared here NCBI_DEPRECATED TSeqPos m_ExpectedEnd; ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp: In constructor 'ncbi::objects::CFastaReader::CFastaReader(const string&, ncbi::objects::CFastaReader::TFlags)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:244:29: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] m_MaxIDLength(kMax_UI4) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:372:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:244:29: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] m_MaxIDLength(kMax_UI4) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:372:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:244:29: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] m_MaxIDLength(kMax_UI4) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:372:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:244:29: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] m_MaxIDLength(kMax_UI4) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:372:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:244:29: warning: 'ncbi::objects::CFastaReader::m_ExpectedEnd' is deprecated [-Wdeprecated-declarations] m_MaxIDLength(kMax_UI4) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:377:29: note: declared here NCBI_DEPRECATED TSeqPos m_ExpectedEnd; ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:244:29: warning: 'ncbi::objects::CFastaReader::m_ExpectedEnd' is deprecated [-Wdeprecated-declarations] m_MaxIDLength(kMax_UI4) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:377:29: note: declared here NCBI_DEPRECATED TSeqPos m_ExpectedEnd; ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp: In constructor 'ncbi::objects::CFastaReader::CFastaReader(ncbi::objects::CReaderBase::TReaderFlags, ncbi::objects::CFastaReader::TFlags)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:254:29: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] m_MaxIDLength(kMax_UI4) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:372:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:254:29: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] m_MaxIDLength(kMax_UI4) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:372:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:254:29: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] m_MaxIDLength(kMax_UI4) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:372:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:254:29: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] m_MaxIDLength(kMax_UI4) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:372:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:254:29: warning: 'ncbi::objects::CFastaReader::m_ExpectedEnd' is deprecated [-Wdeprecated-declarations] m_MaxIDLength(kMax_UI4) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:377:29: note: declared here NCBI_DEPRECATED TSeqPos m_ExpectedEnd; ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:254:29: warning: 'ncbi::objects::CFastaReader::m_ExpectedEnd' is deprecated [-Wdeprecated-declarations] m_MaxIDLength(kMax_UI4) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:377:29: note: declared here NCBI_DEPRECATED TSeqPos m_ExpectedEnd; ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp: In destructor 'virtual ncbi::objects::CFastaReader::~CFastaReader()': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:260:33: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] CFastaReader::~CFastaReader(void) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:372:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:260:33: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] CFastaReader::~CFastaReader(void) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:372:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp: In member function 'virtual void ncbi::objects::CFastaReader::ParseDefLine(const TStr&, ncbi::objects::ILineErrorListener*)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:621:9: warning: 'ncbi::objects::CFastaReader::m_ExpectedEnd' is deprecated [-Wdeprecated-declarations] m_ExpectedEnd = range_end - range_start; ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:377:29: note: declared here NCBI_DEPRECATED TSeqPos m_ExpectedEnd; ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:621:9: warning: 'ncbi::objects::CFastaReader::m_ExpectedEnd' is deprecated [-Wdeprecated-declarations] m_ExpectedEnd = range_end - range_start; ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:377:29: note: declared here NCBI_DEPRECATED TSeqPos m_ExpectedEnd; ^ gy/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/agp_seq_entry.cpp -o agp_seq_entry.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/agp_util.cpp -o agp_util.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/agp_validate_reader.cpp -o agp_validate_reader.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/aln_reader.cpp -o aln_reader.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/bed_reader.cpp -o bed_reader.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/cigar.cpp -o cigar.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp -o fasta.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta_aln_builder.cpp -o fasta_aln_builder.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta_reader_utils.cpp -o fasta_reader_utils.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/getfeature.cpp -o getfeature.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gff_reader.cpp -o gff_reader.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/track_data.cpp -o track_data.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/reader_data.cpp -o reader_data.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/microarray_reader.cpp -o microarray_reader.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wa/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/reader_base.cpp: In member function 'virtual bool ncbi::objects::CReaderBase::xIsTrackTerminator(const ncbi::CTempString&)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/reader_base.cpp:652:45: warning: 'static ncbi::CTempString ncbi::NStr::TruncateSpaces(ncbi::CTempString, ncbi::NStr::ETrunc)' is deprecated [-Wdeprecated-declarations] auto line = NStr::TruncateSpaces(strLine); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37:0, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/reader_base.cpp:34: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:2214:24: note: declared here static CTempString TruncateSpaces(const CTempString str, ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gff3_reader.cpp: In member function 'virtual bool ncbi::objects::CGff3Reader::xUpdateAnnotGeneric(const ncbi::objects::CGff2Record&, ncbi::CRef, ncbi::CRef, ncbi::objects::ILineErrorListener*)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gff3_reader.cpp:603:10: warning: unused variable 'st' [-Wunused-variable] auto st = pFeature->GetData().GetSubtype(); ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gtf_reader.cpp: In member function 'virtual bool ncbi::objects::CGtfReader::x_UpdateAnnotCds(const ncbi::objects::CGff2Record&, ncbi::CRef)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gtf_reader.cpp:363:10: warning: variable 'needXref' set but not used [-Wunused-but-set-variable] bool needXref = false; ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gff2_reader.cpp: In member function 'bool ncbi::objects::CGff2Reader::xGetStartsOnPlusStrand(ncbi::TSeqPos, const std::vector >&, bool, std::vector&) const': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gff2_reader.cpp:1195:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (auto i=0; i >&, ncbi::objects::ENa_strand, ncbi::objects::ENa_strand, ncbi::TSeqPos, ncbi::TSeqPos, const ncbi::objects::CGff2Record&, ncbi::objects::CSeq_align_Base::C_Segs::TDenseg&)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gff2_reader.cpp:1282:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (auto i=0; i)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gff2_reader.cpp:1369:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (auto i=0; i&)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:809:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (((endp - beginp) < 2U) ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp: In function 'void ncbi::SeqDB_ReadMemoryGiList(const char*, const char*, std::vector&, bool*)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:886:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (((bendp - bbeginp) < 2U) ^ gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdb.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdb.cpp -o seqdb.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp -o seqdbbitset.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp -o seqdbfilter.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp -o seqdbatlas.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp -o seqdbalias.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp -o seqdbcommon.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp -o seqdbfile.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp -o seqdbimpl.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/incl/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp: In member function 'void ncbi::CSeqDBVol::GetRawSeqAndAmbig(int, const char**, int*, int*, ncbi::CSeqDBLockHold&) const': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:2623:11: warning: variable 'map_end' set but not used [-Wunused-but-set-variable] TIndx map_end = 0; ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp: In member function 'ncbi::CSeqDBIsam::EErrorCode ncbi::CSeqDBIsam::x_StringSearch(const string&, std::vector >&, std::vector >&, std::vector&)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:1001:9: warning: variable 'found_short' set but not used [-Wunused-but-set-variable] int found_short(-1); ^ ude -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp -o seqdbvol.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp -o seqdbvolset.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp -o seqdboidlist.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp -o seqdbisam.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp -o seqdbtax.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp -o seqdbgilistset.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp -o seqdbexpert.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp -o seqdbblob.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp -o seqdbcol.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp -o seqdbgimask.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp -o seqdbobj.o /bin/rm -f libseqdb.a .libseqdb.a.stamp ar cr libseqdb.a seqdb.o seqdbbitset.o seqdbfilter.o seqdbatlas.o seqdbalias.o seqdbcommon.o seqdbfile.o seqdbimpl.o seqdbvol.o seqdbvolset.o seqdboidlist.o seqdbisam.o seqdbtax.o seqdbgilistset.o seqdbexpert.o seqdbblob.o seqdbcol.o seqdbgimask.o seqdbobj.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqdb.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqdb.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libseqdb.a /bin/ln -f .seqdb.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.seqdb.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /usr/pkg/bin/gmake -C demo -w all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/demo TMPL=seqdb_demo -w all gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp -o seqdb_demo.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O seqdb_demo.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lseqdb-static -lxobjutil-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -llzo2 -lgnutls -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lgcrypt -lgpg-error -lz -lz -lm -lpthread -o seqdb_demo strip seqdb_demo /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_demo /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f seqdb_demo /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/seqdb_demo gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' /usr/pkg/bin/gmake -C test -w all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/test TMPL=seqdb_perf -w all gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp -o seqdb_perf.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O seqdb_perf.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lseqdb-static -lxobjutil-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -llzo2 -lgnutls -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lgcrypt -lgpg-error -lz -lz -lm -lpthread -o seqdb_perf strip seqdb_perf /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_perf /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f seqdb_perf /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/seqdb_perf gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /usr/pkg/bin/gmake -C seqdb_writer -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer TMPL=writedb -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer TMPL=writedb -w all /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp: In constructor 'ncbi::CWriteDB_File::CWriteDB_File(const string&, const string&, int, Uint8, bool)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp:113:22: warning: unused variable 'MAX_OFFSET_BITS' [-Wunused-variable] static const int MAX_OFFSET_BITS = (sizeof m_Offset * 8) - 1; ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp: In member function 'int ncbi::CWriteDB_File::Write(const ncbi::CTempString&)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp:149:22: warning: unused variable 'MAX_OFFSET_BITS' [-Wunused-variable] static const int MAX_OFFSET_BITS = (sizeof m_Offset * 8) - 1; ^ gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/criteria.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb.cpp -o writedb.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp -o writedb_impl.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp -o writedb_volume.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp -o writedb_files.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp -o writedb_isam.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp -o writedb_gimask.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp -o writedb_convert.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp -o writedb_general.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp -o writedb_column.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp -o mask_info_registry.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp -o taxid_set.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp -o build_db.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp -o multisource_util.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/criteria.cpp -o criteria.o /bin/rm -f libwritedb.a .libwritedb.a.stamp ar cr libwritedb.a writedb.o writedb_impl.o writedb_volume.o writedb_files.o writedb_isam.o writedb_gimask.o writedb_convert.o writedb_general.o writedb_column.o mask_info_registry.o taxid_set.o build_db.o multisource_util.o criteria.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libwritedb.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libwritedb.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libwritedb.a /bin/ln -f .writedb.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.writedb.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /usr/pkg/bin/gmake -C unit_test -w all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /usr/pkg/bin/gmake -C gene_info_reader -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/gene_info_reader/file_utils.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/gene_info_reader/gene_info.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/gene_info_reader/gene_info.cpp -o gene_info.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp -o gene_info_reader.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/gene_info_reader/file_utils.cpp -o file_utils.o /bin/rm -f libgene_info.a .libgene_info.a.stamp ar cr libgene_info.a gene_info.o gene_info_reader.o file_utils.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgene_info.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libgene_info.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libgene_info.a /bin/ln -f .gene_info.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.gene_info.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /usr/pkg/bin/gmake -C demo -w all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/gene_info_reader/demo TMPL=gene_info_reader -w all gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp -o gene_info_reader_app.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O gene_info_reader_app.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lgene_info-static -lxobjutil-static -lseqdb-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -llzo2 -lgnutls -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lgcrypt -lgpg-error -lz -lz -lm -lpthread -o gene_info_reader strip gene_info_reader /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f gene_info_reader /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f gene_info_reader /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/gene_info_reader gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' /usr/pkg/bin/gmake -C unit_test -w all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /usr/pkg/bin/gmake -C gene_info_writer -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_writer' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_writer' /usr/pkg/bin/gmake -C services -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/services' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/services TMPL=blast_services -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/services' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/services TMPL=blast_services -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/services' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/services/blast_services.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/services/blast_services.cpp -o blast_services.o /bin/rm -f libblast_services.a .libblast_services.a.stamp ar cr libblast_services.a blast_services.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_services.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libblast_services.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libblast_services.a /bin/ln -f .blast_services.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.blast_services.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/services' /usr/pkg/bin/gmake -C unit_test -w all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/services' /usr/pkg/bin/gmake -C blastdb_format -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -w all In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:69: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] CSeqFormatterConfig config = CSeqFormatterConfig()); ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:96:85: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] void DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config = CSeqFormatterConfig()); ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:128:43: warning: 'CSeqFormatter' is deprecated [-Wdeprecated-declarations] CSeqFormatter(const CSeqFormatter& rhs); ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:130:54: warning: 'CSeqFormatter' is deprecated [-Wdeprecated-declarations] CSeqFormatter& operator=(const CSeqFormatter& rhs); ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:130:54: warning: 'CSeqFormatter' is deprecated [-Wdeprecated-declarations] CSeqFormatter& operator=(const CSeqFormatter& rhs); ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:68: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] CSeqFormatterConfig config = CSeqFormatterConfig()); ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:96:84: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] void DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config = CSeqFormatterConfig()); ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:49:74: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] CSeqFormatterConfig config /* = CSeqFormatterConfig() */) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:270:72: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] void CSeqFormatter::DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp: In member function 'std::string ncbi::CBlastDBExtractor::ExtractLeafTaxIds()': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:396:24: warning: variable 'taxids_iter' set but not used [-Wunused-but-set-variable] set::iterator taxids_iter = taxids.begin(); ^ gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp -o seq_writer.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp -o blastdb_dataextract.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp -o blastdb_formatter.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp -o seq_formatter.o /bin/rm -f libblastdb_format.a .libblastdb_format.a.stamp ar cr libblastdb_format.a seq_writer.o blastdb_dataextract.o blastdb_formatter.o seq_formatter.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb_format.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libblastdb_format.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libblastdb_format.a /bin/ln -f .blastdb_format.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.blastdb_format.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /usr/pkg/bin/gmake -C unit_test -w all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast' /usr/pkg/bin/gmake -C lds2 -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/lds2' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/lds2' /usr/pkg/bin/gmake -C data_loaders -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/lds2/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/lds2/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/lds2/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT lds2/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/lds2/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/patcher/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/patcher/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/patcher/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT patcher/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/patcher/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/asn_cache/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/asn_cache/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/asn_cache/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT asn_cache/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/asn_cache/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/cdd/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/cdd/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/cdd/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT cdd/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/cdd/Makefile /usr/pkg/bin/gmake -C genbank -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/pubseq/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/pubseq/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/pubseq/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT pubseq/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/pubseq2/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/pubseq2/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/pubseq2/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT pubseq2/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq2/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/test/Makefile /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -w export-headers gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -w export-headers gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -w all gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/incr_time.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/reader_service.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/request_result.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/blob_id.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/seqref.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/reader_snp.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/processors.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/writer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/reader.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp -o dispatcher.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/reader.cpp -o reader.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/writer.cpp -o writer.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/processors.cpp -o processors.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/reader_snp.cpp -o reader_snp.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/seqref.cpp -o seqref.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/blob_id.cpp -o blob_id.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/request_result.cpp -o request_result.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp -o reader_id1_base.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp -o reader_id2_base.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/reader_service.cpp -o reader_service.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/incr_time.cpp -o incr_time.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp -o info_cache.o /bin/rm -f libncbi_xreader.a .libncbi_xreader.a.stamp ar cr libncbi_xreader.a dispatcher.o reader.o writer.o processors.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbi_xreader.a /bin/ln -f .ncbi_xreader.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbi_xreader.dep /bin/rm -f libncbi_xreader-dll.so .libncbi_xreader-dll.so.stamp /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -shared -o libncbi_xreader-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O -fPIC dispatcher.o reader.o writer.o processors.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxcompress -lz -lbz2 -llzo2 -lgnutls -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lgcrypt -lgpg-error -lz -lz -lm -lpthread /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbi_xreader-dll.so /bin/ln -f .ncbi_xreader-dll.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbi_xreader-dll.dep gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -w all gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gbload_util.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp -o gbloader.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gbload_util.cpp -o gbload_util.o /bin/rm -f libncbi_xloader_genbank.a .libncbi_xloader_genbank.a.stamp ar cr libncbi_xloader_genbank.a gbloader.o gbload_util.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_genbank.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.a /bin/ln -f .ncbi_xloader_genbank.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbi_xloader_genbank.dep /bin/rm -f libncbi_xloader_genbank-dll.so .libncbi_xloader_genbank-dll.so.stamp /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -shared -o libncbi_xloader_genbank-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O -fPIC gbloader.o gbload_util.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -lm -lpthread /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_genbank-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank-dll.so /bin/ln -f .ncbi_xloader_genbank-dll.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbi_xloader_genbank-dll.dep gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /usr/pkg/bin/gmake -C cache -w all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -w export-headers gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -w all gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp -o reader_cache.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp -o writer_cache.o /bin/rm -f libncbi_xreader_cache.a .libncbi_xreader_cache.a.stamp ar cr libncbi_xreader_cache.a reader_cache.o writer_cache.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_cache.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbi_xreader_cache.a /bin/ln -f .ncbi_xreader_cache.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbi_xreader_cache.dep /bin/rm -f libncbi_xreader_cache-dll.so .libncbi_xreader_cache-dll.so.stamp /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -shared -o libncbi_xreader_cache-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O -fPIC reader_cache.o writer_cache.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -lm -lpthread /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_cache-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbi_xreader_cache-dll.so /bin/ln -f .ncbi_xreader_cache-dll.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbi_xreader_cache-dll.dep gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' /usr/pkg/bin/gmake -C pubseq -w all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq' /usr/pkg/bin/gmake -C id2 -w all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -w export-headers gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -w all gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp -o reader_id2.o /bin/rm -f libncbi_xreader_id2.a .libncbi_xreader_id2.a.stamp ar cr libncbi_xreader_id2.a reader_id2.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_id2.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id2.a /bin/ln -f .ncbi_xreader_id2.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbi_xreader_id2.dep /bin/rm -f libncbi_xreader_id2-dll.so .libncbi_xreader_id2-dll.so.stamp /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -shared -o libncbi_xreader_id2-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O -fPIC reader_id2.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lm -lpthread /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_id2-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id2-dll.so /bin/ln -f .ncbi_xreader_id2-dll.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbi_xreader_id2-dll.dep gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' /usr/pkg/bin/gmake -C id1 -w all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -w export-headers gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -w all gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp -o reader_id1.o /bin/rm -f libncbi_xreader_id1.a .libncbi_xreader_id1.a.stamp ar cr libncbi_xreader_id1.a reader_id1.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_id1.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.a /bin/ln -f .ncbi_xreader_id1.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbi_xreader_id1.dep /bin/rm -f libncbi_xreader_id1-dll.so .libncbi_xreader_id1-dll.so.stamp /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -shared -o libncbi_xreader_id1-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O -fPIC reader_id1.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxcompress -lm -lpthread /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_id1-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1-dll.so /bin/ln -f .ncbi_xreader_id1-dll.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbi_xreader_id1-dll.dep gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' /usr/pkg/bin/gmake -C pubseq2 -w all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq2' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq2' /usr/pkg/bin/gmake -C gicache -w all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache TMPL=ncbi_xreader_gicache -w export-headers gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache TMPL=ncbi_xreader_gicache -w all /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c: In function 'GiDataIndex_New': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:58:44: warning: integer overflow in expression [-Woverflow] #define MAP_SIZE_INIT (256L * 1024 * 1024 * 1024) ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:213:12: note: in expansion of macro 'MAP_SIZE_INIT' mapsize = MAP_SIZE_INIT; ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:59:44: warning: integer overflow in expression [-Woverflow] #define MAP_SIZE_DELTA (16L * 1024 * 1024 * 1024) ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:214:40: note: in expansion of macro 'MAP_SIZE_DELTA' if (fstat_err == 0 && fstat.st_size + MAP_SIZE_DELTA > mapsize) ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:59:44: warning: integer overflow in expression [-Woverflow] #define MAP_SIZE_DELTA (16L * 1024 * 1024 * 1024) ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:215:29: note: in expansion of macro 'MAP_SIZE_DELTA' mapsize = fstat.st_size + MAP_SIZE_DELTA; ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c: In function 'x_DataToGiData': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:273:7: warning: unused variable 'logmsg' [-Wunused-variable] char logmsg[256]; ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c: In function 'GICache_LoadAdd': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:618:9: warning: unused variable 'acc_len' [-Wunused-variable] int acc_len; ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c: In function 'GICache_SetMeta': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:816:18: warning: unused variable 'stime' [-Wunused-variable] char meta[512], stime[128]; ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:816:7: warning: unused variable 'meta' [-Wunused-variable] char meta[512], stime[128]; ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c: In function 'GICache_GetAccFreqTab': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:967:11: warning: unused variable 'gi_len' [-Wunused-variable] int64_t gi_len = 0; ^ gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/reader_gicache.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/reader_gicache.cpp -o reader_gicache.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c -o gicache.o /bin/rm -f libncbi_xreader_gicache.a .libncbi_xreader_gicache.a.stamp ar cr libncbi_xreader_gicache.a reader_gicache.o gicache.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_gicache.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_gicache.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbi_xreader_gicache.a /bin/ln -f .ncbi_xreader_gicache.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbi_xreader_gicache.dep /bin/rm -f libncbi_xreader_gicache-dll.so .libncbi_xreader_gicache-dll.so.stamp /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -shared -o libncbi_xreader_gicache-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O -fPIC reader_gicache.o gicache.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -llmdb -lpthread /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_gicache-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_gicache-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbi_xreader_gicache-dll.so /bin/ln -f .ncbi_xreader_gicache-dll.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbi_xreader_gicache-dll.dep gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' /usr/pkg/bin/gmake -C test -w all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/test' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /usr/pkg/bin/gmake -C lds2 -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/lds2' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/lds2' /usr/pkg/bin/gmake -C blastdb -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb/unit_test/Makefile /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -w export-headers gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -w export-headers gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -w all gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp -o bdbloader.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp -o cached_sequence.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp -o local_blastdb_adapter.o /bin/rm -f libncbi_xloader_blastdb.a .libncbi_xloader_blastdb.a.stamp ar cr libncbi_xloader_blastdb.a bdbloader.o cached_sequence.o local_blastdb_adapter.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_blastdb.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbi_xloader_blastdb.a /bin/ln -f .ncbi_xloader_blastdb.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbi_xloader_blastdb.dep gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -w all gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp -o bdbloader_rmt.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp -o remote_blastdb_adapter.o /bin/rm -f libncbi_xloader_blastdb_rmt.a .libncbi_xloader_blastdb_rmt.a.stamp ar cr libncbi_xloader_blastdb_rmt.a bdbloader_rmt.o remote_blastdb_adapter.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb_rmt.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_blastdb_rmt.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbi_xloader_blastdb_rmt.a /bin/ln -f .ncbi_xloader_blastdb_rmt.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbi_xloader_blastdb_rmt.dep gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /usr/pkg/bin/gmake -C unit_test -w all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb/unit_test' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb/unit_test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /usr/pkg/bin/gmake -C patcher -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/patcher' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/patcher' /usr/pkg/bin/gmake -C asn_cache -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/asn_cache' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/asn_cache' /usr/pkg/bin/gmake -C cdd -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/cdd' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/cdd' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders' /usr/pkg/bin/gmake -C simple -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/simple' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/simple TMPL=xobjsimple -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/simple' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/simple TMPL=xobjsimple -w all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/simple' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/simple/simple_om.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/simple/simple_om.cpp -o simple_om.o /bin/rm -f libxobjsimple.a .libxobjsimple.a.stamp ar cr libxobjsimple.a simple_om.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjsimple.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxobjsimple.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxobjsimple.a /bin/ln -f .xobjsimple.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xobjsimple.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/simple' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/simple' /usr/pkg/bin/gmake -C alnmgr -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/alnmgr' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/demo/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/demo/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/demo/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT demo/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/alnmgr/demo/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/unit_test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/unit_test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/unit_test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/alnmgr/unit_test/Makefile /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr TMPL=alnmgr -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/alnmgr' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr TMPL=alnmgr -w all /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/aln_generators.cpp: In function 'void ncbi::InitSplicedsegFromPairwiseAln(ncbi::objects::CSpliced_seg&, const ncbi::CPairwiseAln&, ncbi::objects::CScope*)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/aln_generators.cpp:538:44: warning: typedef 'TAlnRngColl' locally defined but not used [-Wunused-local-typedefs] typedef CAlignRangeCollection TAlnRngColl; ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmap.cpp: In member function 'ncbi::CRef ncbi::objects::CAlnMap::CreateAlignFromRange(const std::vector&, ncbi::TSignedSeqPos, ncbi::TSignedSeqPos, ncbi::objects::CAlnMap::ESegmentTrimFlag)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmap.cpp:1467:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (TNumrow row = 0; row < selected_rows.size(); row++) { ^ gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/alnmgr' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/score_builder_base.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alntext.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/sparse_ci.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/sparse_aln.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/pairwise_aln.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnvec_iterator.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnvec.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnseq.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnsegments.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnpos_ci.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmix.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmapprint.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmap.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alndiag.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/aln_serial.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/aln_seqid.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/aln_generators.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/aln_converters.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/aln_builders.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/aln_builders.cpp -o aln_builders.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/aln_converters.cpp -o aln_converters.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/aln_generators.cpp -o aln_generators.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/aln_seqid.cpp -o aln_seqid.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/aln_serial.cpp -o aln_serial.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alndiag.cpp -o alndiag.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmap.cpp -o alnmap.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmapprint.cpp -o alnmapprint.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp: In static member function 'static bool ncbi::objects::CAlnMixMatches::x_CompareChainScores(const ncbi::CRef&, const ncbi::CRef&)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:76:55: warning: suggest parentheses around '&&' within '||' [-Wparentheses] match1->m_ChainScore == match2->m_ChainScore && ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp: In member function 'void ncbi::objects::CAlnMixMatches::Add(const ncbi::objects::CDense_seg&, ncbi::objects::CAlnMixMatches::TAddFlags)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:192:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] (aln_seq1->m_StrandScore > 0 && ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:196:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] aln_seq2->m_StrandScore > 0 && ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:198:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] aln_seq2->m_StrandScore < 0 && ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/alnmgr/alnmerger.hpp:42:0, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp:36: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp: In member function 'void ncbi::objects::CAlnMixMerger::x_Merge()': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp:140:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (m_AlnMixMatches->m_ContainsNA && m_AlnMixMatches->m_ContainsAA || ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp: In member function 'void ncbi::objects::CAlnMixMerger::x_CreateDenseg()': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp:1210:44: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (start_its_i->second->first != -1) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp:1232:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (m_AlnMixMatches->m_ContainsNA && m_AlnMixMatches->m_ContainsAA || ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp: In member function 'void ncbi::objects::CAlnMixMerger::x_Merge()': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp:151:17: warning: 'width2' may be used uninitialized in this function [-Wmaybe-uninitialized] int width1, width2; ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/alnmgr/alnmerger.hpp:42:0, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmix.cpp:38: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnsegments.cpp:35:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnsegments.cpp: In member function 'void ncbi::objects::CAlnMixSegments::FillUnalignedRegions()': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnsegments.cpp:311:27: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (plus && prev_start_plus_len < start || ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnseq.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnseq.cpp: In static member function 'static bool ncbi::objects::CAlnMixSequences::x_CompareChainScores(const ncbi::CRef&, const ncbi::CRef&)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnseq.cpp:84:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] seq1->m_ChainScore == seq2->m_ChainScore && ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function 'void ncbi::objects::CAlnVecPrinter::PopsetStyle(int, ncbi::objects::CAlnVecPrinter::EAlgorithm)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:136:64: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (left_seg < 0 || seg > right_seg && right_seg > 0) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function 'void ncbi::objects::CAlnVecPrinter::ClustalStyle(int, ncbi::objects::CAlnVecPrinter::EAlgorithm)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:300:64: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (left_seg < 0 || seg > right_seg && right_seg > 0) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/sparse_aln.cpp: In member function 'std::string& ncbi::CSparseAln::GetAlnSeqString(ncbi::IAlnExplorer::TNumrow, std::string&, const TSignedRange&, bool) const': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/sparse_aln.cpp:702:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (translate && aln_range.GetLength() >= trim_from + trim_to) { ^ /usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp -o alnmatch.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp -o alnmerger.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmix.cpp -o alnmix.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnpos_ci.cpp -o alnpos_ci.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnsegments.cpp -o alnsegments.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnseq.cpp -o alnseq.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnvec.cpp -o alnvec.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnvec_iterator.cpp -o alnvec_iterator.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp -o alnvecprint.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/pairwise_aln.cpp -o pairwise_aln.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/sparse_aln.cpp -o sparse_aln.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/sparse_ci.cpp -o sparse_ci.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alntext.cpp -o alntext.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/score_builder_base.cpp -o score_builder_base.o /bin/rm -f libxalnmgr.a .libxalnmgr.a.stamp ar cr libxalnmgr.a aln_builders.o aln_converters.o aln_generators.o aln_seqid.o aln_serial.o alndiag.o alnmap.o alnmapprint.o alnmatch.o alnmerger.o alnmix.o alnpos_ci.o alnsegments.o alnseq.o alnvec.o alnvec_iterator.o alnvecprint.o pairwise_aln.o sparse_aln.o sparse_ci.o alntext.o score_builder_base.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalnmgr.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxalnmgr.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxalnmgr.a /bin/ln -f .xalnmgr.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xalnmgr.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/alnmgr' /usr/pkg/bin/gmake -C demo -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/alnmgr/demo' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/alnmgr/demo' /usr/pkg/bin/gmake -C unit_test -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/alnmgr/unit_test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/alnmgr/unit_test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/alnmgr' /usr/pkg/bin/gmake -C cddalignview -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/cddalignview' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/cddalignview' /usr/pkg/bin/gmake -C test -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/test' /usr/pkg/bin/gmake -C manip -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/manip' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/manip' /usr/pkg/bin/gmake -C cleanup -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/cleanup' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/cleanup/test/Makefile /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup TMPL=cleanup -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/cleanup' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup TMPL=cleanup -w all /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/cleanup.cpp: In static member function 'static bool ncbi::objects::CCleanup::x_HasShortIntron(const ncbi::objects::CSeq_loc&, size_t)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/cleanup.cpp:2623:68: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (abs((long int)this_start - (long int)prev_end) < min_len) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp: In member function 'void ncbi::objects::CNewCleanup_imp::x_RemoveFlankingQuotes(std::string&)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp:7071:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for( ; first_pos <= last_pos ; ++first_pos, --last_pos ) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp:7085:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if( first_pos > last_pos ) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp: In member function 'void ncbi::objects::CNewCleanup_imp::RnarefGenBC(ncbi::objects::CRNA_ref&)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp:8276:10: warning: unused variable 'changed' [-Wunused-variable] bool changed = false; ^ gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/cleanup' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/cleanup_utils.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/cleanup.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/autogenerated_cleanup.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/autogenerated_cleanup.cpp -o autogenerated_cleanup.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp -o autogenerated_extended_cleanup.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/cleanup.cpp -o cleanup.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/cleanup_utils.cpp -o cleanup_utils.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp -o newcleanupp.o /bin/rm -f libxcleanup.a .libxcleanup.a.stamp ar cr libxcleanup.a autogenerated_cleanup.o autogenerated_extended_cleanup.o cleanup.o cleanup_utils.o newcleanupp.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcleanup.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxcleanup.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxcleanup.a /bin/ln -f .xcleanup.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xcleanup.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/cleanup' /usr/pkg/bin/gmake -C test -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/cleanup/test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/cleanup/test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/cleanup' /usr/pkg/bin/gmake -C format -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/format' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format TMPL=xformat -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/format' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format TMPL=xformat -w all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/format' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/flat_qual_slots.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/gene_finder.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/inst_info_map.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/html_anchor_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/gather_iter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/cigar_formatter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/sam_formatter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/genome_project_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/gap_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/alignment_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/flat_file_config.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/gbseq_formatter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/ftable_formatter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/ftable_gather.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/origin_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/ostream_text_ostream.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/item_ostream.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/format_item_ostream.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/genbank_formatter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/embl_formatter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/item_formatter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/flat_file_generator.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/genbank_gather.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/embl_gather.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/gather_items.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/context.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/qualifiers.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/flat_seqloc.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/tsa_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/wgs_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/version_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/source_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/sequence_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/segment_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/reference_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/primary_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/locus_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/keywords_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/ctrl_items.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/genome_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/feature_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/defline_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/dbsource_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/date_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/contig_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/comment_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/basecount_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/accession_item.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/accession_item.cpp -o accession_item.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/basecount_item.cpp -o basecount_item.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/comment_item.cpp: In function 'void ncbi::objects::s_GetAssemblyInfo(const ncbi::objects::CBioseqContext&, std::string&, const ncbi::objects::CUser_object&)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/comment_item.cpp:367:16: warning: unused variable 'is_html' [-Wunused-variable] const bool is_html = ctx.Config().DoHTML(); ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/feature_item.cpp: In function 'const string& ncbi::objects::s_AaName(int)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/feature_item.cpp:1815:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( idx > 0 && idx < ArraySize(s_TrnaList) ) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/feature_item.cpp: In static member function 'static std::string ncbi::objects::CFeatureItem::x_SeqIdWriteForTable(const ncbi::objects::CBioseq&, bool, bool)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/feature_item.cpp:5031:20: warning: variable 'patent' set but not used [-Wunused-but-set-variable] const CSeq_id* patent = NULL; ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/feature_item.cpp:5032:20: warning: variable 'pdb' set but not used [-Wunused-but-set-variable] const CSeq_id* pdb = NULL; ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/primary_item.cpp: In member function 'void ncbi::objects::CPrimaryItem::x_GetStrForPrimary(ncbi::objects::CBioseqContext&)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/primary_item.cpp:213:63: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( ctx.IsRefSeq() && last_stop > -1 && (this_start > (last_stop + 1)) ) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/primary_item.cpp:214:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (this_start < (15 + last_stop) ) { ^ =2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/comment_item.cpp -o comment_item.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/contig_item.cpp -o contig_item.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/date_item.cpp -o date_item.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/dbsource_item.cpp -o dbsource_item.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/defline_item.cpp -o defline_item.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/feature_item.cpp -o feature_item.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/genome_item.cpp -o genome_item.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/ctrl_items.cpp -o ctrl_items.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/keywords_item.cpp -o keywords_item.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/locus_item.cpp -o locus_item.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/primary_item.cpp -o primary_item.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/reference_item.cpp -o reference_item.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/segment_item.cpp -o segment_item.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biol/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/source_item.cpp: In member function 'void ncbi::objects::CSourceItem::x_SetSource(const ncbi::objects::CBioSource&, const ncbi::CSerialObject&)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/source_item.cpp:325:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( genome >= s_organelle_prefix_size ) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/qualifiers.cpp: In member function 'virtual void ncbi::objects::CFlatSeqIdQVal::Format(ncbi::objects::TFlatQuals&, const ncbi::CTempString&, ncbi::objects::CBioseqContext&, ncbi::objects::IFlatQVal::TFlags) const': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/qualifiers.cpp:1050:10: warning: unused variable 'bHtml' [-Wunused-variable] bool bHtml = ctx.Config().DoHTML(); ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/gather_items.cpp: In member function 'void ncbi::objects::CFlatGatherer::x_IdComments(ncbi::objects::CBioseqContext&, ncbi::objects::CFlatGatherer::EGenomeAnnotComment) const': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/gather_items.cpp:1029:34: warning: unused variable 'format' [-Wunused-variable] CCommentItem::ECommentFormat format = ctx.Config().DoHTML() ? ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/gather_items.cpp: In member function 'void ncbi::objects::CFlatGatherer::x_CollectBioSources(ncbi::objects::CFlatGatherer::TSourceFeatSet&) const': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/gather_items.cpp:1798:13: warning: unused variable 'scope' [-Wunused-variable] CScope* scope = &ctx.GetScope(); ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/gather_items.cpp: At global scope: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/gather_items.cpp:759:13: warning: 'bool ncbi::objects::s_NsAreGaps(const ncbi::objects::CBioseq_Handle&, ncbi::objects::CBioseqContext&)' defined but not used [-Wunused-function] static bool s_NsAreGaps(const CBioseq_Handle& seq, CBioseqContext& ctx) ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/flat_file_generator.cpp: In member function 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_entry_Handle&, ncbi::objects::CFlatItemOStream&)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/flat_file_generator.cpp:258:10: warning: unused variable 'nearFeatsSuppress' [-Wunused-variable] bool nearFeatsSuppress = false; ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/flat_file_generator.cpp:261:10: warning: variable 'isNgNtNwNz' set but not used [-Wunused-but-set-variable] bool isNgNtNwNz = false; ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/flat_file_generator.cpp:262:10: warning: variable 'isGED' set but not used [-Wunused-but-set-variable] bool isGED = false; ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/flat_file_generator.cpp:263:10: warning: variable 'isTPA' set but not used [-Wunused-but-set-variable] bool isTPA = false; ^ ogy/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/sequence_item.cpp -o sequence_item.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/source_item.cpp -o source_item.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/version_item.cpp -o version_item.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/wgs_item.cpp -o wgs_item.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/tsa_item.cpp -o tsa_item.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/flat_seqloc.cpp -o flat_seqloc.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/qualifiers.cpp -o qualifiers.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/context.cpp -o context.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/gather_items.cpp -o gather_items.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/embl_gather.cpp -o embl_gather.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/genbank_gather.cpp -o genbank_gather.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/flat_file_generator.cpp -o flat_file_generator.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/item_formatter.cpp -o item_formatter.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/embl_formatter.cpp -o embl_formatter.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/genbank_formatter.cpp -o genbank_formatter.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/format_item_ostream.cpp -o format_item_ostream.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/item_ostream.cpp -o item_ostream.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT 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alignment_item.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/gap_item.cpp -o gap_item.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/genome_project_item.cpp -o genome_project_item.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/sam_formatter.cpp -o sam_formatter.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/cigar_formatter.cpp -o cigar_formatter.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/gather_iter.cpp -o gather_iter.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/html_anchor_item.cpp -o html_anchor_item.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/inst_info_map.cpp -o inst_info_map.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/gene_finder.cpp -o gene_finder.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/format/flat_qual_slots.cpp -o flat_qual_slots.o /bin/rm -f libxformat.a .libxformat.a.stamp ar cr libxformat.a accession_item.o basecount_item.o comment_item.o contig_item.o date_item.o dbsource_item.o defline_item.o feature_item.o genome_item.o ctrl_items.o keywords_item.o locus_item.o primary_item.o reference_item.o segment_item.o sequence_item.o source_item.o version_item.o wgs_item.o tsa_item.o flat_seqloc.o qualifiers.o context.o gather_items.o embl_gather.o genbank_gather.o flat_file_generator.o item_formatter.o embl_formatter.o genbank_formatter.o format_item_ostream.o item_ostream.o ostream_text_ostream.o origin_item.o ftable_gather.o ftable_formatter.o gbseq_formatter.o flat_file_config.o alignment_item.o gap_item.o genome_project_item.o sam_formatter.o cigar_formatter.o gather_iter.o html_anchor_item.o inst_info_map.o gene_finder.o flat_qual_slots.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxformat.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxformat.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxformat.a /bin/ln -f .xformat.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xformat.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/format' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/format' /usr/pkg/bin/gmake -C edit -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/edit' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/protein_match/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/protein_match/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/protein_match/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT protein_match/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/edit/protein_match/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/demo/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/demo/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/demo/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT demo/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/edit/demo/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/unit_test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/unit_test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/unit_test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/edit/unit_test/Makefile /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit TMPL=edit -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/edit' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit TMPL=edit -w all /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp: In member function 'void ncbi::objects::edit::{anonymous}::CSeqdescSortMap::Init()': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:172:44: warning: array subscript has type 'char' [-Wchar-subscripts] while (descr_insert_order[index] != 0) ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:174:45: warning: array subscript has type 'char' [-Wchar-subscripts] if (descr_insert_order[index] >= size()) ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:175:52: warning: array subscript has type 'char' [-Wchar-subscripts] resize(descr_insert_order[index], kMax_Char); ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:176:44: warning: array subscript has type 'char' [-Wchar-subscripts] at(descr_insert_order[index]) = index; ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'void ncbi::objects::edit::ConvertRawToDeltaByNs(ncbi::objects::CSeq_inst&, size_t, int, size_t, int, bool, int, int, int)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:1823:71: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n_len >= min_unknown && (max_unknown < 0 || n_len <= max_unknown)) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:1825:74: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] } else if (n_len >= min_known && (max_known < 0 || n_len <= max_known)) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:1848:63: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n_len >= min_unknown && (max_unknown < 0 || n_len <= max_unknown)) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:1850:66: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] } else if (n_len >= min_known && (max_known < 0 || n_len <= max_known)) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'void ncbi::objects::edit::TrimSeqData(ncbi::objects::CBioseq_Handle, ncbi::CRef, const TCuts&)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2429:16: warning: enumeration value 'eSeqSubMap' not handled in switch [-Wswitch] switch (seqmap_ci.GetType()) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2429:16: warning: enumeration value 'eSeqRef' not handled in switch [-Wswitch] /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2429:16: warning: enumeration value 'eSeqEnd' not handled in switch [-Wswitch] /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2429:16: warning: enumeration value 'eSeqChunk' not handled in switch [-Wswitch] /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2429:16: warning: enumeration value 'eSeqLiteral' not handled in switch [-Wswitch] /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'bool ncbi::objects::edit::s_FindSegment(const ncbi::objects::CDense_seg&, ncbi::objects::CDense_seg_Base::TDim, ncbi::TSeqPos, ncbi::objects::CDense_seg_Base::TNumseg&, ncbi::TSeqPos&)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2785:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (pos >= start && pos < start + len) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2785:39: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (pos >= start && pos < start + len) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'void ncbi::objects::edit::TrimSeqAlign(ncbi::objects::CBioseq_Handle, ncbi::CRef, const TCuts&)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2989:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] else if (seg_start < cut_from) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2992:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] else if (seg_start >= cut_from && ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/promote.cpp: In member function 'void ncbi::objects::edit::CPromote::x_PromoteCdregion(ncbi::objects::CSeq_feat&, ncbi::objects::edit::CPromote::TRnaMap*) const': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/promote.cpp:228:68: warning: 'static void ncbi::objects::CCdregion_translate::TranslateCdregion(std::string&, const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, bool, bool, bool*, ncbi::objects::CCdregion_translate::ETranslationLengthProblemOptions)' is deprecated [-Wdeprecated-declarations] remove_trailingX); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/promote.cpp:52:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objmgr/util/sequence.hpp:931:17: note: declared here static void TranslateCdregion(string& prot, ^ gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/edit' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/gap_trim.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/publication_edit.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/parse_text_options.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/remote_updater.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/rna_edit.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/source_edit.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/gaps_edit.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/feattable_edit.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/mail_report.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/loc_edit.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/capitalization_string.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/link_cds_mrna.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/gb_block_field.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/text_desc_field.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/struc_comm_field.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/dblink_field.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seqid_guesser.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/string_constraint.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/apply_object.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/field_handler.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/autodef_with_tax.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/promote.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/gene_utils.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/gene_utils.cpp -o gene_utils.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp -o seq_entry_edit.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/promote.cpp -o promote.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/autodef_with_tax.cpp -o autodef_with_tax.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/field_handler.cpp -o field_handler.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/apply_object.cpp -o apply_object.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/string_constraint.cpp -o string_constraint.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seqid_guesser.cpp: In constructor 'ncbi::objects::edit::CSeqIdGuesser::CSeqIdGuesser(ncbi::objects::CSeq_entry_Handle)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seqid_guesser.cpp:92:91: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37:0, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objects/general/Dbtag_.hpp:43, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objects/general/Dbtag.hpp:44, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seqid_guesser.cpp:31: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:5473:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seqid_guesser.cpp: In static member function 'static std::vector > ncbi::objects::edit::CSeqIdGuesser::GetIdStrings(ncbi::objects::CBioseq_Handle)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seqid_guesser.cpp:171:87: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37:0, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objects/general/Dbtag_.hpp:43, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objects/general/Dbtag.hpp:44, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seqid_guesser.cpp:31: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:5473:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/link_cds_mrna.cpp: In function 'void ncbi::{anonymous}::xLinkCDSmRNAbyLabelAndLocation(ncbi::objects::CSeq_annot_Base::C_Data::TFtable&)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/link_cds_mrna.cpp:135:13: warning: unused variable 'best_fit_size' [-Wunused-variable] int best_fit_size = -1; ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp: In function 'bool ncbi::objects::edit::AdjustProteinFeaturePartialsToMatchCDS(ncbi::objects::CSeq_feat&, const ncbi::objects::CSeq_feat&)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp:409:19: warning: 'bool ncbi::objects::edit::AdjustFeaturePartialFlagForLocation(ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] any_change |= AdjustFeaturePartialFlagForLocation(new_prot); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp:34:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/edit/cds_fix.hpp:62:43: note: declared here NCBI_DEPRECATED NCBI_XOBJEDIT_EXPORT bool AdjustFeaturePartialFlagForLocation(CSeq_feat& new_feat); ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp:409:19: warning: 'bool ncbi::objects::edit::AdjustFeaturePartialFlagForLocation(ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] any_change |= AdjustFeaturePartialFlagForLocation(new_prot); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp:34:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/edit/cds_fix.hpp:62:43: note: declared here NCBI_DEPRECATED NCBI_XOBJEDIT_EXPORT bool AdjustFeaturePartialFlagForLocation(CSeq_feat& new_feat); ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp:409:63: warning: 'bool ncbi::objects::edit::AdjustFeaturePartialFlagForLocation(ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] any_change |= AdjustFeaturePartialFlagForLocation(new_prot); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp:34:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/edit/cds_fix.hpp:62:43: note: declared here NCBI_DEPRECATED NCBI_XOBJEDIT_EXPORT bool AdjustFeaturePartialFlagForLocation(CSeq_feat& new_feat); ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp: In function 'bool ncbi::objects::edit::AdjustForCDSPartials(const ncbi::objects::CSeq_feat&, ncbi::objects::CSeq_entry_Handle)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp:482:27: warning: 'bool ncbi::objects::edit::AdjustProteinMolInfoToMatchCDS(ncbi::objects::CMolInfo&, const ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] any_change |= AdjustProteinMolInfoToMatchCDS((*it)->SetMolinfo(), cds); ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp:364:6: note: declared here bool AdjustProteinMolInfoToMatchCDS(CMolInfo& molinfo, const CSeq_feat& cds) ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp:482:27: warning: 'bool ncbi::objects::edit::AdjustProteinMolInfoToMatchCDS(ncbi::objects::CMolInfo&, const ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] any_change |= AdjustProteinMolInfoToMatchCDS((*it)->SetMolinfo(), cds); ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp:364:6: note: declared here bool AdjustProteinMolInfoToMatchCDS(CMolInfo& molinfo, const CSeq_feat& cds) ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp:482:82: warning: 'bool ncbi::objects::edit::AdjustProteinMolInfoToMatchCDS(ncbi::objects::CMolInfo&, const ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] any_change |= AdjustProteinMolInfoToMatchCDS((*it)->SetMolinfo(), cds); ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp:364:6: note: declared here bool AdjustProteinMolInfoToMatchCDS(CMolInfo& molinfo, const CSeq_feat& cds) ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp:488:9: warning: 'bool ncbi::objects::edit::AdjustProteinMolInfoToMatchCDS(ncbi::objects::CMolInfo&, const ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] AdjustProteinMolInfoToMatchCDS(new_molinfo_desc->SetMolinfo(), cds); ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp:364:6: note: declared here bool AdjustProteinMolInfoToMatchCDS(CMolInfo& molinfo, const CSeq_feat& cds) ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp:488:9: warning: 'bool ncbi::objects::edit::AdjustProteinMolInfoToMatchCDS(ncbi::objects::CMolInfo&, const ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] AdjustProteinMolInfoToMatchCDS(new_molinfo_desc->SetMolinfo(), cds); ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp:364:6: note: declared here bool AdjustProteinMolInfoToMatchCDS(CMolInfo& molinfo, const CSeq_feat& cds) ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp:488:75: warning: 'bool ncbi::objects::edit::AdjustProteinMolInfoToMatchCDS(ncbi::objects::CMolInfo&, const ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] AdjustProteinMolInfoToMatchCDS(new_molinfo_desc->SetMolinfo(), cds); ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp:364:6: note: declared here bool AdjustProteinMolInfoToMatchCDS(CMolInfo& molinfo, const CSeq_feat& cds) ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp: In function 'bool ncbi::objects::edit::RetranslateCDS(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp:548:5: warning: 'bool ncbi::objects::edit::AdjustForCDSPartials(const ncbi::objects::CSeq_feat&, ncbi::objects::CSeq_entry_Handle)' is deprecated [-Wdeprecated-declarations] AdjustForCDSPartials(cds, peh.GetSeq_entry_Handle()); ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp:449:6: note: declared here bool AdjustForCDSPartials(const CSeq_feat& cds, CSeq_entry_Handle seh) ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp:548:5: warning: 'bool ncbi::objects::edit::AdjustForCDSPartials(const ncbi::objects::CSeq_feat&, ncbi::objects::CSeq_entry_Handle)' is deprecated [-Wdeprecated-declarations] AdjustForCDSPartials(cds, peh.GetSeq_entry_Handle()); ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp:449:6: note: declared here bool AdjustForCDSPartials(const CSeq_feat& cds, CSeq_entry_Handle seh) ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp:548:56: warning: 'bool ncbi::objects::edit::AdjustForCDSPartials(const ncbi::objects::CSeq_feat&, ncbi::objects::CSeq_entry_Handle)' is deprecated [-Wdeprecated-declarations] AdjustForCDSPartials(cds, peh.GetSeq_entry_Handle()); ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp:449:6: note: declared here bool AdjustForCDSPartials(const CSeq_feat& cds, CSeq_entry_Handle seh) ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp: In function 'void ncbi::objects::edit::s_AdjustForUTR(const ncbi::objects::CSeq_feat&, int, int, ncbi::objects::CSeq_loc&, bool&, bool&, ncbi::objects::CScope&)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp:644:65: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (utr.GetLocation().GetStart(eExtreme_Positional) != cd_stop + 1) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp:649:64: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (utr.GetLocation().GetStop(eExtreme_Positional) != cd_start - 1) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp:659:64: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (utr.GetLocation().GetStop(eExtreme_Positional) != cd_start - 1) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp:664:65: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (utr.GetLocation().GetStart(eExtreme_Positional) != cd_stop + 1) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/capitalization_string.cpp: In function 'void ncbi::objects::edit::CapitalizeAfterApostrophe(std::string&)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/capitalization_string.cpp:905:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (rslt[0] != start) ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/capitalization_string.cpp: In function 'void ncbi::objects::edit::FixAffiliationShortWordsInElement(std::string&)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/capitalization_string.cpp:944:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (rslt[0] != start) ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/capitalization_string.cpp: In function 'void ncbi::objects::edit::FixOrdinalNumbers(std::string&)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/capitalization_string.cpp:971:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (rslt[0] != start) ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/loc_edit.cpp: In member function 'bool ncbi::objects::edit::CLocationEditPolicy::ApplyPolicyToFeature(ncbi::objects::CSeq_feat&, ncbi::objects::CScope&) const': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/loc_edit.cpp:550:19: warning: 'bool ncbi::objects::edit::AdjustFeaturePartialFlagForLocation(ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] any_change |= AdjustFeaturePartialFlagForLocation(feat); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/loc_edit.cpp:35:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/edit/cds_fix.hpp:62:43: note: declared here NCBI_DEPRECATED NCBI_XOBJEDIT_EXPORT bool AdjustFeaturePartialFlagForLocation(CSeq_feat& new_feat); ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/loc_edit.cpp:550:19: warning: 'bool ncbi::objects::edit::AdjustFeaturePartialFlagForLocation(ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] any_change |= AdjustFeaturePartialFlagForLocation(feat); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/loc_edit.cpp:35:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/edit/cds_fix.hpp:62:43: note: declared here NCBI_DEPRECATED NCBI_XOBJEDIT_EXPORT bool AdjustFeaturePartialFlagForLocation(CSeq_feat& new_feat); ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/loc_edit.cpp:550:59: warning: 'bool ncbi::objects::edit::AdjustFeaturePartialFlagForLocation(ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] any_change |= AdjustFeaturePartialFlagForLocation(feat); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/loc_edit.cpp:35:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/edit/cds_fix.hpp:62:43: note: declared here NCBI_DEPRECATED NCBI_XOBJEDIT_EXPORT bool AdjustFeaturePartialFlagForLocation(CSeq_feat& new_feat); ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/loc_edit.cpp: In function 'bool ncbi::objects::edit::ApplyPolicyToFeature(const ncbi::objects::edit::CLocationEditPolicy&, const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, bool, bool)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/loc_edit.cpp:773:38: warning: 'bool ncbi::objects::edit::RetranslateCDS(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&)' is deprecated [-Wdeprecated-declarations] if (!retranslate_cds || !RetranslateCDS(*new_feat, scope)) { ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/loc_edit.cpp:35:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/edit/cds_fix.hpp:65:43: note: declared here NCBI_DEPRECATED NCBI_XOBJEDIT_EXPORT bool RetranslateCDS(const CSeq_feat& cds, CScope& scope); ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/loc_edit.cpp:773:38: warning: 'bool ncbi::objects::edit::RetranslateCDS(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&)' is deprecated [-Wdeprecated-declarations] if (!retranslate_cds || !RetranslateCDS(*new_feat, scope)) { ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/loc_edit.cpp:35:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/edit/cds_fix.hpp:65:43: note: declared here NCBI_DEPRECATED NCBI_XOBJEDIT_EXPORT bool RetranslateCDS(const CSeq_feat& cds, CScope& scope); ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/loc_edit.cpp:773:69: warning: 'bool ncbi::objects::edit::RetranslateCDS(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&)' is deprecated [-Wdeprecated-declarations] if (!retranslate_cds || !RetranslateCDS(*new_feat, scope)) { ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/loc_edit.cpp:35:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/edit/cds_fix.hpp:65:43: note: declared here NCBI_DEPRECATED NCBI_XOBJEDIT_EXPORT bool RetranslateCDS(const CSeq_feat& cds, CScope& scope); ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/loc_edit.cpp:774:17: warning: 'bool ncbi::objects::edit::AdjustForCDSPartials(const ncbi::objects::CSeq_feat&, ncbi::objects::CSeq_entry_Handle)' is deprecated [-Wdeprecated-declarations] AdjustForCDSPartials(*new_feat, scope.GetBioseqHandle(new_feat->GetLocation()).GetSeq_entry_Handle()); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/loc_edit.cpp:35:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/edit/cds_fix.hpp:64:43: note: declared here NCBI_DEPRECATED NCBI_XOBJEDIT_EXPORT bool AdjustForCDSPartials(const CSeq_feat& cds, CSeq_entry_Handle seh); ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/loc_edit.cpp:774:17: warning: 'bool ncbi::objects::edit::AdjustForCDSPartials(const ncbi::objects::CSeq_feat&, ncbi::objects::CSeq_entry_Handle)' is deprecated [-Wdeprecated-declarations] AdjustForCDSPartials(*new_feat, scope.GetBioseqHandle(new_feat->GetLocation()).GetSeq_entry_Handle()); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/loc_edit.cpp:35:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/edit/cds_fix.hpp:64:43: note: declared here NCBI_DEPRECATED NCBI_XOBJEDIT_EXPORT bool AdjustForCDSPartials(const CSeq_feat& cds, CSeq_entry_Handle seh); ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/loc_edit.cpp:774:117: warning: 'bool ncbi::objects::edit::AdjustForCDSPartials(const ncbi::objects::CSeq_feat&, ncbi::objects::CSeq_entry_Handle)' is deprecated [-Wdeprecated-declarations] AdjustForCDSPartials(*new_feat, scope.GetBioseqHandle(new_feat->GetLocation()).GetSeq_entry_Handle()); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/loc_edit.cpp:35:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/edit/cds_fix.hpp:64:43: note: declared here NCBI_DEPRECATED NCBI_XOBJEDIT_EXPORT bool AdjustForCDSPartials(const CSeq_feat& cds, CSeq_entry_Handle seh); ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/rna_edit.cpp: In member function 'bool ncbi::objects::edit::CFindITSParser::IsLengthTooLarge(const string&, int, int, const std::vector&, const std::vector&, const std::vector&, int)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/rna_edit.cpp:261:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int j = i + 1; j < spans.size(); j++) ^ I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seqid_guesser.cpp -o seqid_guesser.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/dblink_field.cpp -o dblink_field.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/struc_comm_field.cpp -o struc_comm_field.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/text_desc_field.cpp -o text_desc_field.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/gb_block_field.cpp -o gb_block_field.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/link_cds_mrna.cpp -o link_cds_mrna.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp -o cds_fix.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/capitalization_string.cpp -o capitalization_string.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/loc_edit.cpp -o loc_edit.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/mail_report.cpp -o mail_report.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/feattable_edit.cpp -o feattable_edit.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/gaps_edit.cpp -o gaps_edit.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/source_edit.cpp -o source_edit.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/rna_edit.cpp -o rna_edit.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fP/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/parse_text_options.cpp: In function 'ncbi::SIZE_TYPE ncbi::objects::edit::FindWithOptions(const string&, const string&, ncbi::SIZE_TYPE, bool, bool)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/parse_text_options.cpp:47:73: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pos = NStr::Find(str, pattern, pos, NPOS, NStr::eFirst, str_case); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37:0, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objtools/edit/parse_text_options.hpp:34, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/parse_text_options.cpp:33: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:5473:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^ IC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/remote_updater.cpp -o remote_updater.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/parse_text_options.cpp -o parse_text_options.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/publication_edit.cpp -o publication_edit.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/gap_trim.cpp -o gap_trim.o /bin/rm -f libxobjedit.a .libxobjedit.a.stamp ar cr libxobjedit.a gene_utils.o seq_entry_edit.o promote.o autodef_with_tax.o field_handler.o apply_object.o string_constraint.o seqid_guesser.o dblink_field.o struc_comm_field.o text_desc_field.o gb_block_field.o link_cds_mrna.o cds_fix.o capitalization_string.o loc_edit.o mail_report.o feattable_edit.o gaps_edit.o source_edit.o rna_edit.o remote_updater.o parse_text_options.o publication_edit.o gap_trim.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjedit.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxobjedit.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxobjedit.a /bin/ln -f .xobjedit.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xobjedit.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/edit' /usr/pkg/bin/gmake -C protein_match -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/edit/protein_match' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/edit/protein_match' /usr/pkg/bin/gmake -C demo -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/edit/demo' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/edit/demo' /usr/pkg/bin/gmake -C unit_test -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/edit/unit_test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/edit/unit_test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/edit' /usr/pkg/bin/gmake -C validator -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/validator' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/validator' /usr/pkg/bin/gmake -C asniotest -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/asniotest' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/asniotest' /usr/pkg/bin/gmake -C align -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/align' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/align' /usr/pkg/bin/gmake -C seqmasks_io -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/unit_test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/unit_test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/unit_test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io/unit_test/Makefile /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -w all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/mask_writer_int.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/mask_writer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp -o mask_cmdline_args.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp -o mask_bdb_reader.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp -o mask_fasta_reader.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/mask_writer.cpp -o mask_writer.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp -o mask_writer_fasta.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/mask_writer_int.cpp -o mask_writer_int.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp -o mask_writer_tab.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp -o mask_writer_seqloc.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp -o mask_writer_blastdb_maskinfo.o /bin/rm -f libseqmasks_io.a .libseqmasks_io.a.stamp ar cr libseqmasks_io.a mask_cmdline_args.o mask_bdb_reader.o mask_fasta_reader.o mask_writer.o mask_writer_fasta.o mask_writer_int.o mask_writer_tab.o mask_writer_seqloc.o mask_writer_blastdb_maskinfo.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqmasks_io.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqmasks_io.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libseqmasks_io.a /bin/ln -f .seqmasks_io.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.seqmasks_io.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /usr/pkg/bin/gmake -C unit_test -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io/unit_test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io/unit_test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /usr/pkg/bin/gmake -C eutils -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/eutils' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/eutils' /usr/pkg/bin/gmake -C align_format -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/align_format' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format TMPL=align_format -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/align_format' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format TMPL=align_format -w all /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/showalign.cpp: In function 'void ncbi::align_format::s_MakeDomainString(int, int, const string&, std::string&)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/showalign.cpp:4355:49: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = actual_first_pos, j = 0; i < domain_string.size() - 1 && j < domain_name.size(); i ++, j ++){ ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/showalign.cpp:4355:81: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = actual_first_pos, j = 0; i < domain_string.size() - 1 && j < domain_name.size(); i ++, j ++){ ^ gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/align_format' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/aln_printer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/taxFormat.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/seqalignfilter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/vectorscreen.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/tabular.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/showalign.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/showdefline.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/align_format_util.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/format_flags.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/format_flags.cpp -o format_flags.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/align_format_util.cpp -o align_format_util.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/showdefline.cpp -o showdefline.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/showalign.cpp -o showalign.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/tabular.cpp -o tabular.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/vectorscreen.cpp -o vectorscreen.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/seqalignfilter.cpp -o seqalignfilter.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/taxFormat.cpp -o taxFormat.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/aln_printer.cpp -o aln_printer.o /bin/rm -f libalign_format.a .libalign_format.a.stamp ar cr libalign_format.a format_flags.o align_format_util.o showdefline.o showalign.o tabular.o vectorscreen.o seqalignfilter.o taxFormat.o aln_printer.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libalign_format.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libalign_format.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libalign_format.a /bin/ln -f .align_format.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.align_format.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/align_format' /usr/pkg/bin/gmake -C unit_test -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' gmake[5]: Nothing to be done for 'mark-as-disabled_r'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/align_format' /usr/pkg/bin/gmake -C snputil -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/snputil' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/snputil' /usr/pkg/bin/gmake -C uudutil -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/uudutil' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/uudutil' /usr/pkg/bin/gmake -C variation -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/variation' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/variation' /usr/pkg/bin/gmake -C writers -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/writers' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/writers' gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools' /usr/pkg/bin/gmake -C ctools -w all_r || exit 5 gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/ctools' gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/ctools' /usr/pkg/bin/gmake -C sra -w all_r || exit 5 gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/sra' gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/sra' /usr/pkg/bin/gmake -C algo -w all_r || exit 5 gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/sequence/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/sequence/Makefile.in || /bin/cp -p 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/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT align/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/align/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/structure/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/structure/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/structure/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT structure/Makefile config.status: creating 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/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT volume_merge/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/volume_merge/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/primer/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/primer/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/primer/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT primer/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/primer/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/id_mapper/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/id_mapper/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/id_mapper/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT id_mapper/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/id_mapper/Makefile /usr/pkg/bin/gmake -C dustmask -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/dustmask' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/dustmask TMPL=xalgodustmask -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/dustmask' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/dustmask TMPL=xalgodustmask -w all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/dustmask' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/dustmask/symdust.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/dustmask/symdust.cpp -o symdust.o /bin/rm -f libxalgodustmask.a .libxalgodustmask.a.stamp ar cr libxalgodustmask.a symdust.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgodustmask.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxalgodustmask.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxalgodustmask.a /bin/ln -f .xalgodustmask.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xalgodustmask.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/dustmask' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/dustmask' /usr/pkg/bin/gmake -C winmask -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/winmask' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask TMPL=xalgowinmask -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/winmask' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask TMPL=xalgowinmask -w all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/winmask' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_istat.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/win_mask_config.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/win_mask_util.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/win_mask_dup_table.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/win_mask_counts_converter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_cache_boost.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_istat_obinary.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_uset_hash.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_istat_bin.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_uset_array.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_ostat_bin.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_istat_factory.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_uset_simple.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_istat_ascii.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_ostat.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_ostat_factory.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_window_pattern.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_window_ambig.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_window.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_util.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_score_min.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_score_mean.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker.cpp -o seq_masker.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_score_mean.cpp -o seq_masker_score_mean.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp -o seq_masker_score_mean_glob.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_score_min.cpp -o seq_masker_score_min.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_util.cpp -o seq_masker_util.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_window.cpp -o seq_masker_window.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_window_ambig.cpp -o seq_masker_window_ambig.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_window_pattern.cpp -o seq_masker_window_pattern.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp -o seq_masker_window_pattern_ambig.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_ostat_factory.cpp -o seq_masker_ostat_factory.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_ostat.cpp -o seq_masker_ostat.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp -o seq_masker_ostat_ascii.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_istat_ascii.cpp -o seq_masker_istat_ascii.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_uset_simple.cpp -o seq_masker_uset_simple.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_istat_factory.cpp -o seq_masker_istat_factory.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_ostat_bin.cpp -o seq_masker_ostat_bin.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_uset_array.cpp -o seq_masker_uset_array.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_istat_bin.cpp -o seq_masker_istat_bin.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt.cpp -o seq_masker_ostat_opt.o /tmp/pkgbuild/biology/ncbi-bl/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp: In constructor 'ncbi::CSeqMaskerIstatOAscii::CSeqMaskerIstatOAscii(const string&, Uint4, Uint4, Uint4, Uint4, Uint4, Uint4, Uint4)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp:113:49: warning: 'unit_size' may be used uninitialized in this function [-Wmaybe-uninitialized] if( k == 0U || k > (Uint4)(2*unit_size - 1) ) ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/win_mask_util.cpp: In member function 'virtual bool ncbi::CWinMaskUtil::CIdSet_TextMatch::find(const ncbi::objects::CBioseq_Handle&) const': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/win_mask_util.cpp:130:45: warning: 'std::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::TGetTitleFlags)' is deprecated [-Wdeprecated-declarations] string id_str = sequence::GetTitle( bsh ); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/win_mask_util.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objmgr/util/sequence.hpp:289:8: note: declared here string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0); ^ ast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp -o seq_masker_ostat_opt_ascii.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_uset_hash.cpp -o seq_masker_uset_hash.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp -o seq_masker_istat_oascii.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp -o seq_masker_ostat_opt_bin.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_istat_obinary.cpp -o seq_masker_istat_obinary.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_cache_boost.cpp -o seq_masker_cache_boost.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/win_mask_counts_converter.cpp -o win_mask_counts_converter.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/win_mask_dup_table.cpp -o win_mask_dup_table.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp -o win_mask_gen_counts.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/win_mask_util.cpp -o win_mask_util.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/win_mask_config.cpp -o win_mask_config.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_istat.cpp -o seq_masker_istat.o /bin/rm -f libxalgowinmask.a .libxalgowinmask.a.stamp ar cr libxalgowinmask.a seq_masker.o seq_masker_score_mean.o seq_masker_score_mean_glob.o seq_masker_score_min.o seq_masker_util.o seq_masker_window.o seq_masker_window_ambig.o seq_masker_window_pattern.o seq_masker_window_pattern_ambig.o seq_masker_ostat_factory.o seq_masker_ostat.o seq_masker_ostat_ascii.o seq_masker_istat_ascii.o seq_masker_uset_simple.o seq_masker_istat_factory.o seq_masker_ostat_bin.o seq_masker_uset_array.o seq_masker_istat_bin.o seq_masker_ostat_opt.o seq_masker_ostat_opt_ascii.o seq_masker_uset_hash.o seq_masker_istat_oascii.o seq_masker_ostat_opt_bin.o seq_masker_istat_obinary.o seq_masker_cache_boost.o win_mask_counts_converter.o win_mask_dup_table.o win_mask_gen_counts.o win_mask_util.o win_mask_config.o seq_masker_istat.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgowinmask.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxalgowinmask.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxalgowinmask.a /bin/ln -f .xalgowinmask.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xalgowinmask.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/winmask' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/winmask' /usr/pkg/bin/gmake -C sequence -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/sequence' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/sequence' /usr/pkg/bin/gmake -C blast -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex_search/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex_search/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex_search/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT dbindex_search/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/dbindex_search/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blast_sra_input/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blast_sra_input/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blast_sra_input/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT blast_sra_input/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/blast_sra_input/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/gumbel_params/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/gumbel_params/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/gumbel_params/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT gumbel_params/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/gumbel_params/Makefile /usr/pkg/bin/gmake -C composition_adjustment -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -w all /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/compo_heap.c:137:1: warning: 's_CompoHeapIsValid' defined but not used [-Wunused-function] s_CompoHeapIsValid(BlastCompo_HeapRecord * heapArray, int i, int n) ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c:185:1: warning: 's_AlignmentsAreSorted' defined but not used [-Wunused-function] s_AlignmentsAreSorted(BlastCompo_Alignment * alignments) ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c:200:1: warning: 's_DistinctAlignmentsLength' defined but not used [-Wunused-function] s_DistinctAlignmentsLength(BlastCompo_Alignment * list) ^ gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/unified_pvalues.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/smith_waterman.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/composition_adjustment.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/compo_heap.c. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/compo_heap.c -o compo_heap.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c -o compo_mode_condition.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/composition_adjustment.c -o composition_adjustment.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c -o matrix_frequency_data.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c -o nlm_linear_algebra.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c -o optimize_target_freq.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c -o redo_alignment.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/smith_waterman.c -o smith_waterman.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/unified_pvalues.c -o unified_pvalues.o /bin/rm -f libcomposition_adjustment.a .libcomposition_adjustment.a.stamp ar cr libcomposition_adjustment.a compo_heap.o compo_mode_condition.o composition_adjustment.o matrix_frequency_data.o nlm_linear_algebra.o optimize_target_freq.o redo_alignment.o smith_waterman.o unified_pvalues.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcomposition_adjustment.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libcomposition_adjustment.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libcomposition_adjustment.a /bin/ln -f .composition_adjustment.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.composition_adjustment.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' /usr/pkg/bin/gmake -C core -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/core' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core TMPL=blast -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/core' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core TMPL=blast -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/core' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/spliced_hits.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/hspfilter_mapper.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/jumper.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/boost_erf.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_hspstream_mt_utils.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_traceback_mt_priv.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/index_ungapped.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/gencode_singleton.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/split_query.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_dynarray.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_sw.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_tune.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_query_info.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_program.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_posit.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_parameters.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/phi_lookup.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/phi_gapalign.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/phi_extend.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/pattern.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_encoding.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/ncbi_math.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/ncbi_std.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/matrix_freq_ratios.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/lookup_wrap.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/lookup_util.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/link_hsps.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/hspfilter_culling.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/hspfilter_besthit.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/hspfilter_collector.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/greedy_align.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/gapinfo.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_util.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_traceback.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_stat.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_setup.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_seqsrc.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_seg.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_psi_priv.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/na_ungapped.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_psi.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_options.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_message.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_nascan.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_nalookup.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_aascan.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_aalookup.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_lookup.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_kappa.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_itree.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_hspstream.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_hits.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_gapalign.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_filter.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_extend.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_engine.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_diagnostics.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/aa_ungapped.c. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_kappa.c: In function 'Blast_RedoAlignmentCore_MT': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_kappa.c:3409:11: warning: unused variable 'my_stderr' [-Wunused-variable] FILE *my_stderr = stderr; ^ -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/aa_ungapped.c -o aa_ungapped.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_diagnostics.c -o blast_diagnostics.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_engine.c -o blast_engine.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_extend.c -o blast_extend.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_filter.c -o blast_filter.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_gapalign.c -o blast_gapalign.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_hits.c -o blast_hits.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_hspstream.c -o blast_hspstream.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_itree.c -o blast_itree.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_kappa.c -o blast_kappa.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_lookup.c -o blast_lookup.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_aalookup.c -o blast_aalookup.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_aascan.c -o blast_aascan.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_nalookup.c -o blast_nalookup.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_nascan.c -o blast_nascan.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_message.c -o blast_message.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_options.c -o blast_options.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_psi.c -o blast_psi.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/na_ungapped.c -o na_ungapped.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_psi_priv.c -o blast_psi_priv.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc 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-I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/gencode_singleton.c -o gencode_singleton.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/index_ungapped.c -o index_ungapped.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_traceback_mt_priv.c -o blast_traceback_mt_priv.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_hspstream_mt_utils.c -o blast_hspstream_mt_utils.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/boost_erf.c -o boost_erf.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/jumper.c -o jumper.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/hspfilter_mapper.c -o hspfilter_mapper.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/spliced_hits.c -o spliced_hits.o /bin/rm -f libblast.a .libblast.a.stamp ar cr libblast.a aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o blast_filter.o blast_gapalign.o blast_hits.o blast_hspstream.o blast_itree.o blast_kappa.o blast_lookup.o blast_aalookup.o blast_aascan.o blast_nalookup.o blast_nascan.o blast_message.o blast_options.o blast_psi.o na_ungapped.o blast_psi_priv.o blast_seg.o blast_seqsrc.o blast_setup.o blast_stat.o blast_traceback.o blast_util.o gapinfo.o greedy_align.o hspfilter_collector.o hspfilter_besthit.o hspfilter_culling.o link_hsps.o lookup_util.o lookup_wrap.o matrix_freq_ratios.o ncbi_std.o ncbi_math.o blast_encoding.o pattern.o phi_extend.o phi_gapalign.o phi_lookup.o blast_parameters.o blast_posit.o blast_program.o blast_query_info.o blast_tune.o blast_sw.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o blast_traceback_mt_priv.o blast_hspstream_mt_utils.o boost_erf.o jumper.o hspfilter_mapper.o spliced_hits.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libblast.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libblast.a /bin/ln -f .blast.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.blast.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/core' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/core' /usr/pkg/bin/gmake -C dbindex -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -w all /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/dbindex.cpp: In function 'const ncbi::blastdbindex::SIndexHeader ncbi::blastdbindex::ReadIndexHeader(void*) [with bool LEGACY = true]': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/dbindex.cpp:306:19: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] unsigned long tmp; ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp: In member function 'std::string ncbi::blastdbindex::CSubjectMap_Factory_Base::extractSeqVector(ncbi::blastdbindex::CSubjectMap_Factory_Base::TSeqData&)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:658:53: warning: 'std::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::TGetTitleFlags)' is deprecated [-Wdeprecated-declarations] string idstr = objects::sequence::GetTitle( bsh ); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:42:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objmgr/util/sequence.hpp:289:8: note: declared here string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0); ^ gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/dbindex_search.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/dbindex.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp -o sequence_istream_fasta.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp -o sequence_istream_bdb.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/dbindex.cpp -o dbindex.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp -o dbindex_factory.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/dbindex_search.cpp -o dbindex_search.o /bin/rm -f libxalgoblastdbindex.a .libxalgoblastdbindex.a.stamp ar cr libxalgoblastdbindex.a sequence_istream_fasta.o sequence_istream_bdb.o dbindex.o dbindex_factory.o dbindex_search.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgoblastdbindex.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxalgoblastdbindex.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxalgoblastdbindex.a /bin/ln -f .xalgoblastdbindex.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xalgoblastdbindex.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' /usr/pkg/bin/gmake -C makeindex -w all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/makeindex TMPL=makeindex -w all gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/makeindex/main.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/makeindex/main.cpp -o main.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp -o mkindex_app.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O main.o mkindex_app.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lxalgoblastdbindex-static -lblast-static -lcomposition_adjustment-static -lseqdb-static -lblastdb-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxobjutil-static -ltables-static -lconnect-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -llzo2 -lgnutls -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lgcrypt -lgpg-error -lz -lz -lm -lpthread -o makembindex strip makembindex /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f makembindex /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f makembindex /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/makembindex gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' /usr/pkg/bin/gmake -C dbindex_search -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/dbindex_search' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/dbindex_search' /usr/pkg/bin/gmake -C api -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/api' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api TMPL=xblast -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/api' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api TMPL=xblast -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/api' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/magicblast.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/magicblast_options.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/deltablast.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/deltablast_options.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/cdd_pssm_input.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/seedtop.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/rpsblast_local.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/subj_ranges_set.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/winmask_filter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/split_query_blk.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/split_query_aux_priv.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/split_query_cxx.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_dbindex.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/effsearchspace_calc.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/objmgrfree_query_data.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/objmgr_query_data.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/query_data.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/remote_search.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_results.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/local_search.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/uniform_search.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/traceback_stage.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/prelim_stage.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/setup_factory.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/search_strategy.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/rps_aux.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/dust_filter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/version.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blastp_kmer_options.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_advprot_options.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_aux_priv.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/msa_pssm_input.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/psi_pssm_input.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/psiblast_iteration.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/psiblast_impl.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/psiblast.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/local_db_adapter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/psibl2seq.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_mtlock.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/repeats_filter_cxx.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_objmgr_tools.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/bl2seq.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/seqsrc_query_factory.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/seqsrc_seqdb.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/seqsrc_multiseq.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/remote_blast.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/local_blast.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/pssm_engine.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/phiblast_prot_options.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/phiblast_nucl_options.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/rpstblastn_options.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/tblastn_options.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/tblastx_options.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blastx_options.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_rps_options.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/psiblast_options.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_prot_options.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/disc_nucl_options.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_nucl_options.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_seqalign.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup_cxx.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_options_builder.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_options_cxx.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_aux.cpp. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/spliced_hits.c"' > .core_spliced_hits.c Updating dependency information for .core_spliced_hits.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/hspfilter_mapper.c"' > .core_hspfilter_mapper.c Updating dependency information for .core_hspfilter_mapper.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/jumper.c"' > .core_jumper.c Updating dependency information for .core_jumper.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/boost_erf.c"' > .core_boost_erf.c Updating dependency information for .core_boost_erf.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_hspstream_mt_utils.c"' > .core_blast_hspstream_mt_utils.c Updating dependency information for .core_blast_hspstream_mt_utils.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_traceback_mt_priv.c"' > .core_blast_traceback_mt_priv.c Updating dependency information for .core_blast_traceback_mt_priv.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/index_ungapped.c"' > .core_index_ungapped.c Updating dependency information for .core_index_ungapped.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/gencode_singleton.c"' > .core_gencode_singleton.c Updating dependency information for .core_gencode_singleton.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/split_query.c"' > .core_split_query.c Updating dependency information for .core_split_query.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_dynarray.c"' > .core_blast_dynarray.c Updating dependency information for .core_blast_dynarray.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_sw.c"' > .core_blast_sw.c Updating dependency information for .core_blast_sw.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_tune.c"' > .core_blast_tune.c Updating dependency information for .core_blast_tune.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_query_info.c"' > .core_blast_query_info.c Updating dependency information for .core_blast_query_info.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_program.c"' > .core_blast_program.c Updating dependency information for .core_blast_program.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_posit.c"' > .core_blast_posit.c Updating dependency information for .core_blast_posit.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_parameters.c"' > .core_blast_parameters.c Updating dependency information for .core_blast_parameters.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/phi_lookup.c"' > .core_phi_lookup.c Updating dependency information for .core_phi_lookup.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/phi_gapalign.c"' > .core_phi_gapalign.c Updating dependency information for .core_phi_gapalign.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/phi_extend.c"' > .core_phi_extend.c Updating dependency information for .core_phi_extend.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/pattern.c"' > .core_pattern.c Updating dependency information for .core_pattern.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_encoding.c"' > .core_blast_encoding.c Updating dependency information for .core_blast_encoding.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/ncbi_math.c"' > .core_ncbi_math.c Updating dependency information for .core_ncbi_math.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/ncbi_std.c"' > .core_ncbi_std.c Updating dependency information for .core_ncbi_std.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/matrix_freq_ratios.c"' > .core_matrix_freq_ratios.c Updating dependency information for .core_matrix_freq_ratios.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/lookup_wrap.c"' > .core_lookup_wrap.c Updating dependency information for .core_lookup_wrap.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/lookup_util.c"' > .core_lookup_util.c Updating dependency information for .core_lookup_util.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/link_hsps.c"' > .core_link_hsps.c Updating dependency information for .core_link_hsps.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/hspfilter_culling.c"' > .core_hspfilter_culling.c Updating dependency information for .core_hspfilter_culling.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/hspfilter_besthit.c"' > .core_hspfilter_besthit.c Updating dependency information for .core_hspfilter_besthit.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/hspfilter_collector.c"' > .core_hspfilter_collector.c Updating dependency information for .core_hspfilter_collector.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/greedy_align.c"' > .core_greedy_align.c Updating dependency information for .core_greedy_align.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/gapinfo.c"' > .core_gapinfo.c Updating dependency information for .core_gapinfo.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_util.c"' > .core_blast_util.c Updating dependency information for .core_blast_util.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_traceback.c"' > .core_blast_traceback.c Updating dependency information for .core_blast_traceback.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_stat.c"' > .core_blast_stat.c Updating dependency information for .core_blast_stat.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_setup.c"' > .core_blast_setup.c Updating dependency information for .core_blast_setup.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_seqsrc.c"' > .core_blast_seqsrc.c Updating dependency information for .core_blast_seqsrc.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_seg.c"' > .core_blast_seg.c Updating dependency information for .core_blast_seg.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_psi_priv.c"' > .core_blast_psi_priv.c Updating dependency information for .core_blast_psi_priv.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/na_ungapped.c"' > .core_na_ungapped.c Updating dependency information for .core_na_ungapped.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_psi.c"' > .core_blast_psi.c Updating dependency information for .core_blast_psi.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_options.c"' > .core_blast_options.c Updating dependency information for .core_blast_options.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_message.c"' > .core_blast_message.c Updating dependency information for .core_blast_message.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_nascan.c"' > .core_blast_nascan.c Updating dependency information for .core_blast_nascan.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_nalookup.c"' > .core_blast_nalookup.c Updating dependency information for .core_blast_nalookup.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_aascan.c"' > .core_blast_aascan.c Updating dependency information for .core_blast_aascan.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_aalookup.c"' > .core_blast_aalookup.c Updating dependency information for .core_blast_aalookup.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_lookup.c"' > .core_blast_lookup.c Updating dependency information for .core_blast_lookup.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_kappa.c"' > .core_blast_kappa.c Updating dependency information for .core_blast_kappa.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_itree.c"' > .core_blast_itree.c Updating dependency information for .core_blast_itree.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_hspstream.c"' > .core_blast_hspstream.c Updating dependency information for .core_blast_hspstream.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_hits.c"' > .core_blast_hits.c Updating dependency information for .core_blast_hits.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_gapalign.c"' > .core_blast_gapalign.c Updating dependency information for .core_blast_gapalign.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_filter.c"' > .core_blast_filter.c Updating dependency information for .core_blast_filter.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_extend.c"' > .core_blast_extend.c Updating dependency information for .core_blast_extend.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_engine.c"' > .core_blast_engine.c Updating dependency information for .core_blast_engine.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_diagnostics.c"' > .core_blast_diagnostics.c Updating dependency information for .core_blast_diagnostics.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/aa_ungapped.c"' > .core_aa_ungapped.c Updating dependency information for .core_aa_ungapped.c. rm .core_blast_nascan.c .core_blast_diagnostics.c .core_blast_sw.c .core_split_query.c .core_hspfilter_collector.c .core_blast_query_info.c .core_blast_traceback_mt_priv.c .core_jumper.c .core_blast_util.c .core_blast_aascan.c .core_blast_dynarray.c .core_blast_posit.c .core_na_ungapped.c .core_blast_setup.c .core_blast_hits.c .core_blast_traceback.c .core_matrix_freq_ratios.c .core_ncbi_std.c .core_phi_extend.c .core_link_hsps.c .core_phi_lookup.c .core_blast_message.c .core_blast_extend.c .core_blast_lookup.c .core_blast_psi.c .core_phi_gapalign.c .core_spliced_hits.c .core_pattern.c .core_blast_hspstream.c .core_blast_psi_priv.c .core_blast_gapalign.c .core_hspfilter_mapper.c .core_lookup_wrap.c .core_blast_filter.c .core_index_ungapped.c .core_blast_encoding.c .core_aa_ungapped.c .core_blast_engine.c .core_hspfilter_culling.c .core_gencode_singleton.c .core_blast_options.c .core_boost_erf.c .core_blast_seqsrc.c .core_blast_stat.c .core_blast_aalookup.c .core_blast_parameters.c .core_ncbi_math.c .core_blast_tune.c .core_greedy_align.c .core_gapinfo.c .core_blast_itree.c .core_blast_hspstream_mt_utils.c .core_hspfilter_besthit.c .core_lookup_util.c .core_blast_seg.c .core_blast_nalookup.c .core_blast_program.c .core_blast_kappa.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/aa_ungapped.c"' > .core_aa_ungapped.c /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_aa_ungapped.c -o .core_aa_ungapped.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_diagnostics.c"' > .core_blast_diagnostics.c /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -In file included from .core_blast_kappa.c:1:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_kappa.c: In function 'Blast_RedoAlignmentCore_MT': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_kappa.c:3409:11: warning: unused variable 'my_stderr' [-Wunused-variable] FILE *my_stderr = stderr; ^ D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_blast_diagnostics.c -o .core_blast_diagnostics.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_engine.c"' > .core_blast_engine.c /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_blast_engine.c -o .core_blast_engine.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_extend.c"' > .core_blast_extend.c /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_blast_extend.c -o .core_blast_extend.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_filter.c"' > .core_blast_filter.c /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_blast_filter.c -o .core_blast_filter.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_gapalign.c"' > .core_blast_gapalign.c /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_blast_gapalign.c -o .core_blast_gapalign.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_hits.c"' > .core_blast_hits.c /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_blast_hits.c -o .core_blast_hits.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_hspstream.c"' > .core_blast_hspstream.c /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_blast_hspstream.c -o .core_blast_hspstream.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_itree.c"' > .core_blast_itree.c /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_blast_itree.c -o .core_blast_itree.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_kappa.c"' > .core_blast_kappa.c /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_blast_kappa.c -o .core_blast_kappa.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_lookup.c"' > .core_blast_lookup.c /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_blast_lookup.c -o .core_blast_lookup.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_aalookup.c"' > .core_blast_aalookup.c /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_blast_aalookup.c -o .core_blast_aalookup.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_aascan.c"' > .core_blast_aascan.c /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_blast_aascan.c -o .core_blast_aascan.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_nalookup.c"' > .core_blast_nalookup.c /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_blast_nalookup.c -o .core_blast_nalookup.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_nascan.c"' > .core_blast_nascan.c /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_blast_nascan.c -o .core_blast_nascan.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_message.c"' > .core_blast_message.c /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_blast_message.c -o .core_blast_message.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_options.c"' > .core_blast_options.c /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_blast_options.c -o .core_blast_options.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_psi.c"' > .core_blast_psi.c /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_blast_psi.c -o .core_blast_psi.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/na_ungapped.c"' > .core_na_ungapped.c /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_na_ungapped.c -o .core_na_ungapped.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_psi_priv.c"' > .core_blast_psi_priv.c /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_blast_psi_priv.c -o .core_blast_psi_priv.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_seg.c"' > .core_blast_seg.c /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_blast_seg.c -o .core_blast_seg.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_seqsrc.c"' > .core_blast_seqsrc.c /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_blast_seqsrc.c -o .core_blast_seqsrc.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_setup.c"' > .core_blast_setup.c /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_blast_setup.c -o .core_blast_setup.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_stat.c"' > .core_blast_stat.c /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_blast_stat.c -o .core_blast_stat.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_traceback.c"' > .core_blast_traceback.c /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_blast_traceback.c -o .core_blast_traceback.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_util.c"' > .core_blast_util.c /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_blast_util.c -o .core_blast_util.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/gapinfo.c"' > .core_gapinfo.c /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_gapinfo.c -o .core_gapinfo.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/greedy_align.c"' > .core_greedy_align.c /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_greedy_align.c -o .core_greedy_align.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/hspfilter_collector.c"' > .core_hspfilter_collector.c /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_hspfilter_collector.c -o .core_hspfilter_collector.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/hspfilter_besthit.c"' > .core_hspfilter_besthit.c /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_hspfilter_besthit.c -o .core_hspfilter_besthit.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/hspfilter_culling.c"' > .core_hspfilter_culling.c /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_hspfilter_culling.c -o .core_hspfilter_culling.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/link_hsps.c"' > .core_link_hsps.c /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_link_hsps.c -o .core_link_hsps.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/lookup_util.c"' > .core_lookup_util.c /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_lookup_util.c -o .core_lookup_util.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/lookup_wrap.c"' > .core_lookup_wrap.c /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_lookup_wrap.c -o .core_lookup_wrap.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/matrix_freq_ratios.c"' > .core_matrix_freq_ratios.c /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_matrix_freq_ratios.c -o .core_matrix_freq_ratios.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/ncbi_std.c"' > .core_ncbi_std.c /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_ncbi_std.c -o .core_ncbi_std.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/ncbi_math.c"' > .core_ncbi_math.c /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_ncbi_math.c -o .core_ncbi_math.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_encoding.c"' > .core_blast_encoding.c /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_blast_encoding.c -o .core_blast_encoding.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/pattern.c"' > .core_pattern.c /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_pattern.c -o .core_pattern.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/phi_extend.c"' > .core_phi_extend.c /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_phi_extend.c -o .core_phi_extend.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/phi_gapalign.c"' > .core_phi_gapalign.c /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_phi_gapalign.c -o .core_phi_gapalign.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/phi_lookup.c"' > .core_phi_lookup.c /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_phi_lookup.c -o .core_phi_lookup.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_parameters.c"' > .core_blast_parameters.c /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_blast_parameters.c -o .core_blast_parameters.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_posit.c"' > .core_blast_posit.c /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_blast_posit.c -o .core_blast_posit.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_program.c"' > .core_blast_program.c /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_blast_program.c -o .core_blast_program.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_query_info.c"' > .core_blast_query_info.c /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_blast_query_info.c -o .core_blast_query_info.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_tune.c"' > .core_blast_tune.c /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_blast_tune.c -o .core_blast_tune.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_sw.c"' > .core_blast_sw.c /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_blast_sw.c -o .core_blast_sw.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_dynarray.c"' > .core_blast_dynarray.c /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_blast_dynarray.c -o .core_blast_dynarray.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/split_query.c"' > .core_split_query.c /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_split_query.c -o .core_split_query.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/gencode_singleton.c"' > .core_gencode_singleton.c /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_gencode_singleton.c -o .core_gencode_singleton.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/index_ungapped.c"' > .core_index_ungapped.c /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_index_ungapped.c -o .core_index_ungapped.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_traceback_mt_priv.c"' > .core_blast_traceback_mt_priv.c /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_blast_traceback_mt_priv.c -o .core_blast_traceback_mt_priv.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_hspstream_mt_utils.c"' > .core_blast_hspstream_mt_utils.c /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_blast_hspstream_mt_utils.c -o .core_blast_hspstream_mt_utils.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/boost_erf.c"' > .core_boost_erf.c /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_boost_erf.c -o .core_boost_erf.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/jumper.c"' > .core_jumper.c /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_jumper.c -o .core_jumper.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/hspfilter_mapper.c"' > .core_hspfilter_mapper.c /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_hspfilter_mapper.c -o .core_hspfilter_mapper.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/spliced_hits.c"' > .core_spliced_hits.c /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include .core_spliced_hits.c -o .core_spliced_hits.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/wor/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp: In member function 'char* ncbi::blast::CBlastOptionsHandle::GetFilterString() const': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp:100:36: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] return m_Opts->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp:36: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_options.hpp:171:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp: In member function 'void ncbi::blast::CBlastOptionsHandle::SetFilterString(const char*, bool)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp:106:37: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] m_Opts->SetFilterString(f, clear); /* NCBI_FAKE_WARNING */ ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp:36: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_options.hpp:173:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^ k/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_aux.cpp -o blast_aux.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_options_cxx.cpp -o blast_options_cxx.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp -o blast_options_local_priv.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_options_builder.cpp -o blast_options_builder.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup_cxx.cpp -o blast_setup_cxx.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_seqalign.cpp -o blast_seqalign.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp -o blast_options_handle.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_nucl_options.cpp -o blast_nucl_options.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/disc_nucl_options.cpp -o disc_nucl_options.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall 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-fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blastx_options.cpp -o blastx_options.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/tblastx_options.cpp -o tblastx_options.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/tblastn_options.cpp -o tblastn_options.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/rpstblastn_options.cpp -o rpstblastn_options.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/phiblast_nucl_options.cpp -o phiblast_nucl_options.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/phiblast_prot_options.cpp -o phiblast_prot_options.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/pssm_engine.cpp -o pssm_engine.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/local_blast.cpp -o local_blast.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/remote_blast.cpp -o remote_blast.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp -o seqinfosrc_seqvec.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp -o seqinfosrc_seqdb.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp -o seqinfosrc_bioseq.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/seqsrc_multiseq.cpp -o seqsrc_multiseq.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/seqsrc_seqdb.cpp -o seqsrc_seqdb.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp//tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/msa_pssm_input.cpp: In member function 'void ncbi::blast::CPsiBlastInputClustalW::x_ExtractAlignmentData()': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/msa_pssm_input.cpp:376:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while (k < m_Msa->dimensions->query_length && ^ pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/seqsrc_query_factory.cpp -o seqsrc_query_factory.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/bl2seq.cpp -o bl2seq.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_objmgr_tools.cpp -o blast_objmgr_tools.o 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/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp -o blast_seqinfosrc_aux.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_dbindex.cpp -o blast_dbindex.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/split_query_cxx.cpp -o split_query_cxx.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/split_query_aux_priv.cpp -o split_query_aux_priv.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/split_query_blk.cpp -o split_query_blk.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/winmask_filter.cpp -o winmask_filter.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/subj_ranges_set.cpp -o subj_ranges_set.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/rpsblast_local.cpp -o rpsblast_local.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/seedtop.cpp -o seedtop.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/cdd_pssm_input.cpp -o cdd_pssm_input.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/deltablast_options.cpp -o deltablast_options.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/deltablast.cpp -o deltablast.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/magicblast_options.cpp -o magicblast_options.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/magicblast.cpp -o magicblast.o /bin/rm -f libxblast.a .libxblast.a.stamp ar cr libxblast.a .core_aa_ungapped.o .core_blast_diagnostics.o .core_blast_engine.o .core_blast_extend.o .core_blast_filter.o .core_blast_gapalign.o .core_blast_hits.o .core_blast_hspstream.o .core_blast_itree.o .core_blast_kappa.o .core_blast_lookup.o .core_blast_aalookup.o .core_blast_aascan.o .core_blast_nalookup.o .core_blast_nascan.o .core_blast_message.o .core_blast_options.o .core_blast_psi.o .core_na_ungapped.o .core_blast_psi_priv.o .core_blast_seg.o .core_blast_seqsrc.o .core_blast_setup.o .core_blast_stat.o .core_blast_traceback.o .core_blast_util.o .core_gapinfo.o .core_greedy_align.o .core_hspfilter_collector.o .core_hspfilter_besthit.o .core_hspfilter_culling.o .core_link_hsps.o .core_lookup_util.o .core_lookup_wrap.o .core_matrix_freq_ratios.o .core_ncbi_std.o .core_ncbi_math.o .core_blast_encoding.o .core_pattern.o .core_phi_extend.o .core_phi_gapalign.o .core_phi_lookup.o .core_blast_parameters.o .core_blast_posit.o .core_blast_program.o .core_blast_query_info.o .core_blast_tune.o .core_blast_sw.o .core_blast_dynarray.o .core_split_query.o .core_gencode_singleton.o .core_index_ungapped.o .core_blast_traceback_mt_priv.o .core_blast_hspstream_mt_utils.o .core_boost_erf.o .core_jumper.o .core_hspfilter_mapper.o .core_spliced_hits.o blast_aux.o blast_options_cxx.o blast_options_local_priv.o blast_options_builder.o blast_setup_cxx.o blast_seqalign.o blast_options_handle.o blast_nucl_options.o disc_nucl_options.o blast_prot_options.o psiblast_options.o blast_rps_options.o blastx_options.o tblastx_options.o tblastn_options.o rpstblastn_options.o phiblast_nucl_options.o phiblast_prot_options.o pssm_engine.o local_blast.o remote_blast.o seqinfosrc_seqvec.o seqinfosrc_seqdb.o seqinfosrc_bioseq.o seqsrc_multiseq.o seqsrc_seqdb.o seqsrc_query_factory.o bl2seq.o blast_objmgr_tools.o repeats_filter_cxx.o blast_mtlock.o psibl2seq.o local_db_adapter.o psiblast.o psiblast_impl.o psiblast_iteration.o psi_pssm_input.o msa_pssm_input.o psiblast_aux_priv.o blast_aux_priv.o blast_advprot_options.o blastp_kmer_options.o version.o dust_filter.o rps_aux.o search_strategy.o setup_factory.o prelim_stage.o traceback_stage.o uniform_search.o local_search.o blast_results.o remote_search.o query_data.o objmgr_query_data.o objmgrfree_query_data.o bioseq_extract_data_priv.o effsearchspace_calc.o blast_seqinfosrc_aux.o blast_dbindex.o split_query_cxx.o split_query_aux_priv.o split_query_blk.o winmask_filter.o subj_ranges_set.o rpsblast_local.o seedtop.o cdd_pssm_input.o deltablast_options.o deltablast.o magicblast_options.o magicblast.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblast.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxblast.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxblast.a /bin/ln -f .xblast.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xblast.dep rm .core_hspfilter_collector.c .core_blast_query_info.c .core_blast_filter.c .core_blast_dynarray.c .core_blast_aascan.c .core_phi_gapalign.c .core_blast_engine.c .core_blast_stat.c .core_blast_tune.c .core_blast_hspstream_mt_utils.c .core_blast_itree.c .core_ncbi_std.c .core_blast_hits.c .core_blast_extend.c .core_link_hsps.c .core_phi_lookup.c .core_blast_psi.c .core_blast_psi_priv.c .core_blast_nascan.c .core_blast_diagnostics.c .core_blast_seqsrc.c .core_gencode_singleton.c .core_hspfilter_culling.c .core_index_ungapped.c .core_blast_options.c .core_greedy_align.c .core_blast_util.c .core_blast_parameters.c .core_blast_seg.c .core_blast_nalookup.c .core_blast_traceback_mt_priv.c .core_phi_extend.c .core_blast_posit.c .core_jumper.c .core_gapinfo.c .core_na_ungapped.c .core_blast_traceback.c .core_split_query.c .core_blast_message.c .core_matrix_freq_ratios.c .core_blast_program.c .core_blast_lookup.c .core_blast_encoding.c .core_spliced_hits.c .core_lookup_wrap.c .core_hspfilter_besthit.c .core_hspfilter_mapper.c .core_blast_kappa.c .core_blast_gapalign.c .core_blast_sw.c .core_boost_erf.c .core_blast_hspstream.c .core_aa_ungapped.c .core_blast_setup.c .core_blast_aalookup.c .core_ncbi_math.c .core_pattern.c .core_lookup_util.c gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/api' /usr/bin/awk: can't open file make_xblast.log.new source line number 4 leaseMT/build/algo/blast/api' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/api' /usr/pkg/bin/gmake -C proteinkmer -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer TMPL=proteinkmer -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer TMPL=proteinkmer -w all /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:431:0: warning: ignoring #pragma ivdep [-Wunknown-pragmas] #pragma ivdep ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp: In function 'void ncbi::neighbor_query(const std::vector >&, const __uint64_t*, std::vector >&, ncbi::blast::CMinHashFile&, int, int, double, ncbi::TBlastKmerPrelimScoreVector&, ncbi::BlastKmerStats&, int)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:791:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (last_oid == *i) ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp:84:0: warning: ignoring #pragma ivdep [-Wunknown-pragmas] #pragma ivdep ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp:91:0: warning: ignoring #pragma ivdep [-Wunknown-pragmas] #pragma ivdep ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp:98:0: warning: ignoring #pragma ivdep [-Wunknown-pragmas] #pragma ivdep ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp: In member function 'void ncbi::blast::CMinHashFile::GetMinHits(int, int&, std::vector&) const': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp:77:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (hits.size() < numHashes) ^ gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/kblastapi.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/pearson.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/blastkmeroptions.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/blastkmer.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/blastkmer.cpp -o blastkmer.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp -o blastkmerindex.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/blastkmeroptions.cpp -o blastkmeroptions.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp -o blastkmerresults.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp -o blastkmerutils.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp -o mhfile.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/pearson.cpp -o pearson.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/kblastapi.cpp -o kblastapi.o /bin/rm -f libproteinkmer.a .libproteinkmer.a.stamp ar cr libproteinkmer.a blastkmer.o blastkmerindex.o blastkmeroptions.o blastkmerresults.o blastkmerutils.o mhfile.o pearson.o kblastapi.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libproteinkmer.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libproteinkmer.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libproteinkmer.a /bin/ln -f .proteinkmer.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.proteinkmer.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /usr/pkg/bin/gmake -C unit_test -w all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[6]: *** No rule to make target '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' NOTE: skipping project "proteinkmer_unit_test" due to unmet requirements gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /usr/pkg/bin/gmake -C format -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/format' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format TMPL=xblastformat -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/format' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format TMPL=xblastformat -w all /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blastxml_format.cpp: In function 'void ncbi::s_SeqAlignSetToXMLHits(std::list >&, const ncbi::objects::CSeq_align_set&, ncbi::objects::CScope*, const ncbi::CBlastFormattingMatrix*, const ncbi::TMaskedQueryRegions*, bool, int, int, ncbi::CNcbiOstream*)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blastxml_format.cpp:501:86: warning: 'ncbi::CObjectOStreamXml::CObjectOStreamXml(ncbi::CNcbiOstream&, bool)' is deprecated [-Wdeprecated-declarations] auto_ptr xml_one_hit_os (new CObjectOStreamXml (one_hit_os,false)); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:39:0, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blastxml_format.cpp:34: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/serial/objostrxml.hpp:66:26: note: declared here NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut)); ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbimisc.hpp:1099:38: note: in definition of macro 'NCBI_DEPRECATED_CTOR' # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blastxml_format.cpp: In function 'bool ncbi::s_SerializeAndSplitBy(const ncbi::CSerialObject&, const char*, std::string&, std::string&, bool, bool)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blastxml_format.cpp:785:89: warning: 'ncbi::CObjectOStreamXml::CObjectOStreamXml(ncbi::CNcbiOstream&, bool)' is deprecated [-Wdeprecated-declarations] auto_ptr xml_one_iter_os(new CObjectOStreamXml (one_iter_ss_os,false)); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:39:0, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blastxml_format.cpp:34: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/serial/objostrxml.hpp:66:26: note: declared here NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut)); ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbimisc.hpp:1099:38: note: in definition of macro 'NCBI_DEPRECATED_CTOR' # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blast_format.cpp:49:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/algo/blast/format/data4xmlformat.hpp: In member function 'virtual std::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/algo/blast/format/data4xmlformat.hpp:155:39: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/uniform_search.hpp:42, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/algo/blast/format/blast_format.hpp:42, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blast_format.cpp:37: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_options.hpp:171:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blast_format.cpp:51:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/algo/blast/format/data4xml2format.hpp: In member function 'virtual std::string ncbi::CCmdLineBlastXML2ReportData::GetFilterString() const': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/algo/blast/format/data4xml2format.hpp:140:40: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/uniform_search.hpp:42, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/algo/blast/format/blast_format.hpp:42, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blast_format.cpp:37: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_options.hpp:171:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blast_format.cpp: In member function 'void ncbi::CBlastFormat::x_SplitSeqAlign(ncbi::CConstRef, ncbi::objects::CSeq_align_set&, ncbi::objects::CSeq_align_set&, ncbi::blast::CPsiBlastIterationState::TSeqIds&)': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blast_format.cpp:520:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(count >= m_NumSummary) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/data4xmlformat.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/algo/blast/format/data4xmlformat.hpp: In member function 'virtual std::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/algo/blast/format/data4xmlformat.hpp:155:39: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/uniform_search.hpp:42, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/algo/blast/format/data4xmlformat.hpp:42, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/data4xmlformat.cpp:37: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_options.hpp:171:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/data4xml2format.cpp:36:0: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/algo/blast/format/data4xml2format.hpp: In member function 'virtual std::string ncbi::CCmdLineBlastXML2ReportData::GetFilterString() const': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/algo/blast/format/data4xml2format.hpp:140:40: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/uniform_search.hpp:42, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/algo/blast/format/data4xml2format.hpp:42, from /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/data4xml2format.cpp:36: /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_options.hpp:171:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^ /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blast_async_format.cpp: In member function 'virtual void* CBlastAsyncFormatThread::Main()': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blast_async_format.cpp:122:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (m_ResultsMap.size() != currNum) ^ gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/format' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blast_async_format.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/sam.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/vecscreen_run.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/build_archive.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/data4xml2format.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/data4xmlformat.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blast_format.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blastxml2_format.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blastxml_format.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blastfmtutil.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blastfmtutil.cpp -o blastfmtutil.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blastxml_format.cpp -o blastxml_format.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blastxml2_format.cpp -o blastxml2_format.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blast_format.cpp -o blast_format.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/data4xmlformat.cpp -o data4xmlformat.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/data4xml2format.cpp -o data4xml2format.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/build_archive.cpp -o build_archive.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/vecscreen_run.cpp -o vecscreen_run.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/sam.cpp -o sam.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blast_async_format.cpp -o blast_async_format.o /bin/rm -f libxblastformat.a .libxblastformat.a.stamp ar cr libxblastformat.a blastfmtutil.o blastxml_format.o blastxml2_format.o blast_format.o data4xmlformat.o data4xml2format.o build_archive.o vecscreen_run.o sam.o blast_async_format.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblastformat.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxblastformat.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxblastformat.a /bin/ln -f .xblastformat.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xblastformat.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/format' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/format' /usr/pkg/bin/gmake -C blastinput -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/demo/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/demo/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/demo/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT demo/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/demo/Makefile /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput TMPL=blastinput -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput TMPL=blastinput -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/kblastp_args.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/igblastn_args.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/blastx_args.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/blastn_args.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/blastp_args.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/cmdline_flags.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/blast_args.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/blast_input.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/blast_input.cpp -o blast_input.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp -o blast_fasta_input.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp -o blast_scope_src.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/blast_args.cpp -o blast_args.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/cmdline_flags.cpp -o cmdline_flags.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp -o blast_input_aux.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/blastp_args.cpp -o blastp_args.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/blastn_args.cpp -o blastn_args.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp -o rmblastn_args.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/blastx_args.cpp -o blastx_args.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp -o tblastn_args.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp -o tblastx_args.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp -o psiblast_args.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp -o rpsblast_args.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp -o rpstblastn_args.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/igblastn_args.cpp -o igblastn_args.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp -o igblastp_args.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp -o deltablast_args.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp -o magicblast_args.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/kblastp_args.cpp -o kblastp_args.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp -o blast_asn1_input.o /bin/rm -f libblastinput.a .libblastinput.a.stamp ar cr libblastinput.a blast_input.o blast_fasta_input.o blast_scope_src.o blast_args.o cmdline_flags.o blast_input_aux.o blastp_args.o blastn_args.o rmblastn_args.o blastx_args.o tblastn_args.o tblastx_args.o psiblast_args.o rpsblast_args.o rpstblastn_args.o igblastn_args.o igblastp_args.o deltablast_args.o magicblast_args.o kblastp_args.o blast_asn1_input.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastinput.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libblastinput.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libblastinput.a /bin/ln -f .blastinput.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.blastinput.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' /usr/pkg/bin/gmake -C unit_test -w all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test' NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test' /usr/pkg/bin/gmake -C demo -w all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/demo' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/demo' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' /usr/pkg/bin/gmake -C blast_sra_input -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/blast_sra_input' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/blast_sra_input' /usr/pkg/bin/gmake -C igblast -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/igblast' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/igblast TMPL=igblast -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/igblast' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/igblast TMPL=igblast -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/igblast' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/igblast/igblast.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/igblast/igblast.cpp -o igblast.o /bin/rm -f libigblast.a .libigblast.a.stamp ar cr libigblast.a igblast.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libigblast.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libigblast.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libigblast.a /bin/ln -f .igblast.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.igblast.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/igblast' /usr/pkg/bin/gmake -C gumbel_params -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/gumbel_params' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/gumbel_params' /usr/pkg/bin/gmake -C unit_tests -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests' /usr/pkg/bin/gmake -C blast_format -w all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format' NOTE: Skipping project blast_format due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format' /usr/pkg/bin/gmake -C blastdb -w all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb' NOTE: Skipping project blastdb due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb' /usr/pkg/bin/gmake -C seqdb_reader -w all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader' NOTE: Skipping project seqdb_reader due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader' /usr/pkg/bin/gmake -C api -w all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' NOTE: Skipping project api due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/unit_tests/api TMPL=blast_unit_test_util -w mark-as-disabled gmake[7]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/blast/unit_tests/api TMPL=seqalign_util -w mark-as-disabled gmake[7]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast' /usr/pkg/bin/gmake -C segmask -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/segmask' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/segmask TMPL=xalgosegmask -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/segmask' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/segmask TMPL=xalgosegmask -w all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/segmask' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/segmask/segmask.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/algo/segmask/segmask.cpp -o segmask.o /bin/rm -f libxalgosegmask.a .libxalgosegmask.a.stamp ar cr libxalgosegmask.a segmask.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgosegmask.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxalgosegmask.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxalgosegmask.a /bin/ln -f .xalgosegmask.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xalgosegmask.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/segmask' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/segmask' /usr/pkg/bin/gmake -C align -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/align' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/align' /usr/pkg/bin/gmake -C structure -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/structure' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/structure' /usr/pkg/bin/gmake -C ms -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/ms' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/ms' /usr/pkg/bin/gmake -C gnomon -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/gnomon' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/gnomon' /usr/pkg/bin/gmake -C tree -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/tree' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/tree' /usr/pkg/bin/gmake -C phy_tree -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/phy_tree' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/phy_tree' /usr/pkg/bin/gmake -C seqqa -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/seqqa' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/seqqa' /usr/pkg/bin/gmake -C cobalt -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/cobalt' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/cobalt' /usr/pkg/bin/gmake -C text -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/text' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/text' /usr/pkg/bin/gmake -C volume_merge -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/volume_merge' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/volume_merge' /usr/pkg/bin/gmake -C primer -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/primer' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/primer' /usr/pkg/bin/gmake -C id_mapper -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/id_mapper' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/id_mapper' gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo' /usr/pkg/bin/gmake -C misc -w all_r || exit 5 gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/clog/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/clog/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/clog/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT clog/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/clog/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/grid_cgi/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/grid_cgi/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/grid_cgi/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT grid_cgi/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/grid_cgi/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/xmlwrapp/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/xmlwrapp/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/xmlwrapp/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT xmlwrapp/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/xmlwrapp/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/eutils_client/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/eutils_client/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/eutils_client/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT eutils_client/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/eutils_client/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/hydra_client/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/hydra_client/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/hydra_client/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT hydra_client/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/hydra_client/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/discrepancy/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/discrepancy/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/discrepancy/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT discrepancy/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/discrepancy/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/xmlreaders/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/xmlreaders/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/xmlreaders/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT xmlreaders/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/xmlreaders/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/hgvs/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/hgvs/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/hgvs/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT hgvs/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/hgvs/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/netstorage/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/netstorage/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/netstorage/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT netstorage/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/netstorage/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/jsonwrapp/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/jsonwrapp/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/jsonwrapp/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT jsonwrapp/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/jsonwrapp/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/biosample_util/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/biosample_util/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/biosample_util/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT biosample_util/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/biosample_util/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/data_loaders_util/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/data_loaders_util/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/data_loaders_util/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT data_loaders_util/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/data_loaders_util/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/lapackwrapp/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/lapackwrapp/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/lapackwrapp/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT lapackwrapp/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/lapackwrapp/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/pmcidconv_client/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/pmcidconv_client/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/pmcidconv_client/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT pmcidconv_client/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/pmcidconv_client/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/grpc_integration/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/grpc_integration/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/grpc_integration/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT grpc_integration/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/grpc_integration/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/cgi_redirect/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/cgi_redirect/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/misc/cgi_redirect/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT cgi_redirect/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/cgi_redirect/Makefile /usr/pkg/bin/gmake -C third_party -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/third_party' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/third_party' /usr/pkg/bin/gmake -C third_party_static -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/third_party_static' NOTE: Skipping project third_party_static due to unmet requirements: -DLL gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/third_party_static' gmake[4]: Nothing to be done for 'mark-as-disabled_r'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/third_party_static' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/third_party_static' /usr/pkg/bin/gmake -C clog -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/clog' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/clog' /usr/pkg/bin/gmake -C grid_cgi -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/grid_cgi' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/grid_cgi' /usr/pkg/bin/gmake -C xmlwrapp -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/xmlwrapp' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/xmlwrapp' /usr/pkg/bin/gmake -C eutils_client -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/eutils_client' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/eutils_client' /usr/pkg/bin/gmake -C hydra_client -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/hydra_client' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/hydra_client' /usr/pkg/bin/gmake -C discrepancy -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/discrepancy' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/discrepancy' /usr/pkg/bin/gmake -C xmlreaders -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/xmlreaders' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/xmlreaders' /usr/pkg/bin/gmake -C hgvs -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/hgvs' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/hgvs' /usr/pkg/bin/gmake -C netstorage -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/netstorage' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/netstorage' /usr/pkg/bin/gmake -C jsonwrapp -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/jsonwrapp' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/jsonwrapp' /usr/pkg/bin/gmake -C biosample_util -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/biosample_util' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/biosample_util' /usr/pkg/bin/gmake -C data_loaders_util -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/data_loaders_util' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/data_loaders_util' /usr/pkg/bin/gmake -C lapackwrapp -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/lapackwrapp' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/lapackwrapp' /usr/pkg/bin/gmake -C pmcidconv_client -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/pmcidconv_client' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/pmcidconv_client' /usr/pkg/bin/gmake -C grpc_integration -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/grpc_integration' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/grpc_integration' NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/pkg/bin/gmake -C cgi_redirect -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/cgi_redirect' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/cgi_redirect' gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc' /usr/pkg/bin/gmake -C gui -w all_r || exit 5 gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/gui' gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/gui' /usr/pkg/bin/gmake -C app -w all_r || exit 5 gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/asn2asn/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/asn2asn/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/asn2asn/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT asn2asn/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/asn2asn/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/asn2fasta/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/asn2fasta/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/asn2fasta/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT asn2fasta/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/asn2fasta/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/asn2flat/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/asn2flat/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/asn2flat/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT asn2flat/Makefile config.status: creating 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/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/asn_cleanup/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/asn_cleanup/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT asn_cleanup/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/asn_cleanup/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/id1_fetch/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/id1_fetch/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/id1_fetch/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT id1_fetch/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/id1_fetch/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/convert_seq/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/convert_seq/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/convert_seq/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT convert_seq/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/convert_seq/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/nmer_repeats/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/nmer_repeats/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/nmer_repeats/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT nmer_repeats/Makefile config.status: creating 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'/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/asn2fasta' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/asn2fasta' /usr/pkg/bin/gmake -C asn2flat -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/asn2flat' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/asn2flat' /usr/pkg/bin/gmake -C asnval -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/asnval' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/asnval' /usr/pkg/bin/gmake -C asn_cleanup -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/asn_cleanup' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/asn_cleanup' /usr/pkg/bin/gmake -C id1_fetch -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/id1_fetch' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/id1_fetch' /usr/pkg/bin/gmake -C blast -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/Makefile.legacy_blast builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast -w all gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/legacy_blast.pl /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/legacy_blast.pl /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/legacy_blast.pl gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/Makefile.update_blastdb builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast -w all gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/update_blastdb.pl /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/update_blastdb.pl /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/update_blastdb.pl gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast TMPL=blast_app_util -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast TMPL=blast_app_util -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/blast_app_util.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/blast_app_util.cpp -o blast_app_util.o /bin/rm -f libblast_app_util.a .libblast_app_util.a.stamp ar cr libblast_app_util.a blast_app_util.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_app_util.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libblast_app_util.a /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libblast_app_util.a /bin/ln -f .blast_app_util.dep /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.blast_app_util.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast TMPL=blastp -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/blastp_app.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/blastp_app.cpp -o blastp_app.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O blastp_app.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -llzo2 -lgnutls -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lgcrypt -lgpg-error -lz -lz -lm -lpthread -o blastp strip blastp /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastp /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f blastp /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/blastp gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast TMPL=blastn -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/blastn_app.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/blastn_app.cpp -o blastn_app.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O blastn_app.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lblast_app_util -lxformat-static -lxcleanup-static -lvalid-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lsubmit-static -lxregexp-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -llzo2 -lgnutls -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lgcrypt -lgpg-error -lz -lz -lm -lpthread -o blastn strip blastn /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f blastn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/blastn gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast TMPL=blastx -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/blastx_app.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/blastx_app.cpp -o blastx_app.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O blastx_app.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -llzo2 -lgnutls -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lgcrypt -lgpg-error -lz -lz -lm -lpthread -o blastx strip blastx /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastx /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f blastx /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/blastx gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast TMPL=tblastn -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/tblastn_app.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/tblastn_app.cpp -o tblastn_app.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O tblastn_app.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -llzo2 -lgnutls -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lgcrypt -lgpg-error -lz -lz -lm -lpthread -o tblastn strip tblastn /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f tblastn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/tblastn gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast TMPL=tblastx -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/tblastx_app.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/tblastx_app.cpp -o tblastx_app.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O tblastx_app.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -llzo2 -lgnutls -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lgcrypt -lgpg-error -lz -lz -lm -lpthread -o tblastx strip tblastx /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastx /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f tblastx /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/tblastx gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast TMPL=psiblast -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/psiblast_app.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/psiblast_app.cpp -o psiblast_app.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O psiblast_app.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -llzo2 -lgnutls -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lgcrypt -lgpg-error -lz -lz -lm -lpthread -o psiblast strip psiblast /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f psiblast /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/psiblast gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast TMPL=rpsblast -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/rpsblast_app.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/rpsblast_app.cpp -o rpsblast_app.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O rpsblast_app.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -llzo2 -lgnutls -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lgcrypt -lgpg-error -lz -lz -lm -lpthread -o rpsblast strip rpsblast /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpsblast /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f rpsblast /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/rpsblast gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast TMPL=rpstblastn -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/rpstblastn_app.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/rpstblastn_app.cpp -o rpstblastn_app.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O rpstblastn_app.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -llzo2 -lgnutls -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lgcrypt -lgpg-error -lz -lz -lm -lpthread -o rpstblastn strip rpstblastn /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpstblastn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f rpstblastn /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/rpstblastn gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast TMPL=blast_formatter -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/blast_formatter.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/blast_formatter.cpp -o blast_formatter.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O blast_formatter.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -llzo2 -lgnutls -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lgcrypt -lgpg-error -lz -lz -lm -lpthread -o blast_formatter strip blast_formatter /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_formatter /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f blast_formatter /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/blast_formatter gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast TMPL=deltablast -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/deltablast_app.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/deltablast_app.cpp -o deltablast_app.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O deltablast_app.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -llzo2 -lgnutls -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lgcrypt -lgpg-error -lz -lz -lm -lpthread -o deltablast strip deltablast /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f deltablast /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f deltablast /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/deltablast gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast TMPL=seedtop -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/seedtop_app.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blast/seedtop_app.cpp -o seedtop_app.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O seedtop_app.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -llzo2 -lgnutls -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lgcrypt -lgpg-error -lz -lz -lm -lpthread -o seedtop strip seedtop /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seedtop /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f seedtop /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/seedtop gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' /usr/pkg/bin/gmake -C convert_seq -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/convert_seq' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/convert_seq' /usr/pkg/bin/gmake -C nmer_repeats -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/nmer_repeats' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/nmer_repeats' /usr/pkg/bin/gmake -C objmgr -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/objmgr' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/objmgr' /usr/pkg/bin/gmake -C gi2taxid -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/gi2taxid' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/gi2taxid' /usr/pkg/bin/gmake -C netschedule -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/netschedule' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/netschedule' /usr/pkg/bin/gmake -C grid -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/grid' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/grid' /usr/pkg/bin/gmake -C netstorage -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/netstorage' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/netstorage' /usr/pkg/bin/gmake -C igblast -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/igblast' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/igblast' /usr/pkg/bin/gmake -C winmasker -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/winmasker' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/winmasker/Makefile.windowmasker_2.2.22_adapter builddir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/winmasker -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/winmasker' /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/windowmasker_2.2.22_adapter.py gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/winmasker' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/winmasker TMPL=winmasker -w all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/winmasker' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/winmasker/win_mask_app.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/winmasker/main.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/winmasker/main.cpp -o main.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/winmasker/win_mask_app.cpp -o win_mask_app.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp -o win_mask_sdust_masker.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O main.o win_mask_app.o win_mask_sdust_masker.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lxalgowinmask -lxalgodustmask -lblast -lcomposition_adjustment -lseqmasks_io -lseqdb -lblastdb -ltables -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -llzo2 -lgnutls -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lgcrypt -lgpg-error -lz -lz -lm -lpthread -o windowmasker strip windowmasker /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f windowmasker /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f windowmasker /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/windowmasker gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/winmasker' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/winmasker' /usr/pkg/bin/gmake -C dustmasker -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/dustmasker' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/dustmasker TMPL=dustmasker -w all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/dustmasker' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/dustmasker/dust_mask_app.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/dustmasker/main.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/dustmasker/main.cpp -o main.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/dustmasker/dust_mask_app.cpp -o dust_mask_app.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O main.o dust_mask_app.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lxalgodustmask -lseqmasks_io -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -lseqdb -lblastdb -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -llzo2 -lgnutls -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lgcrypt -lgpg-error -lz -lz -lm -lpthread -o dustmasker strip dustmasker /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f dustmasker /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f dustmasker /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/dustmasker gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/dustmasker' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/dustmasker' /usr/pkg/bin/gmake -C segmasker -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/segmasker' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/segmasker TMPL=segmasker -w all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/segmasker' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/segmasker/segmasker.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/segmasker/segmasker.cpp -o segmasker.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O segmasker.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lxobjsimple-static -lxalgosegmask-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -llzo2 -lgnutls -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lgcrypt -lgpg-error -lz -lz -lm -lpthread -o segmasker strip segmasker /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f segmasker /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f segmasker /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/segmasker gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/segmasker' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/segmasker' /usr/pkg/bin/gmake -C blastdb -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blastdb' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blastdb TMPL=blastdbcmd -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blastdb/blastdbcmd.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blastdb/blastdbcmd.cpp -o blastdbcmd.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O blastdbcmd.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -llzo2 -lgnutls -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lgcrypt -lgpg-error -lz -lz -lm -lpthread -o blastdbcmd strip blastdbcmd /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcmd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f blastdbcmd /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/blastdbcmd gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blastdb' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blastdb TMPL=makeblastdb -w all /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blastdb/makeblastdb.cpp: In member function 'void CMakeBlastDBApp::x_BuildDatabase()': /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blastdb/makeblastdb.cpp:1126:15: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (bytes >= (1L << 31)) { ^ gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blastdb/masked_range_set.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blastdb/makeblastdb.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blastdb/makeblastdb.cpp -o makeblastdb.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blastdb/masked_range_set.cpp -o masked_range_set.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O makeblastdb.o masked_range_set.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lwritedb-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -llzo2 -lgnutls -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lgcrypt -lgpg-error -lz -lz -lm -lpthread -o makeblastdb strip makeblastdb /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeblastdb /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f makeblastdb /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/makeblastdb gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blastdb' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blastdb TMPL=blastdb_aliastool -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blastdb/blastdb_aliastool.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blastdb/blastdb_aliastool.cpp -o blastdb_aliastool.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O blastdb_aliastool.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lwritedb-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -llzo2 -lgnutls -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lgcrypt -lgpg-error -lz -lz -lm -lpthread -o blastdb_aliastool strip blastdb_aliastool /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_aliastool /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f blastdb_aliastool /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/blastdb_aliastool gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blastdb' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blastdb TMPL=blastdbcheck -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blastdb/blastdbcheck.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blastdb/blastdbcheck.cpp -o blastdbcheck.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O blastdbcheck.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -llzo2 -lgnutls -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lgcrypt -lgpg-error -lz -lz -lm -lpthread -o blastdbcheck strip blastdbcheck /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcheck /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f blastdbcheck /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/blastdbcheck gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blastdb' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blastdb TMPL=convert2blastmask -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blastdb/convert2blastmask.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blastdb/convert2blastmask.cpp -o convert2blastmask.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O convert2blastmask.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lproteinkmer -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -ldbapi_driver -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -llzo2 -lgnutls -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lgcrypt -lgpg-error -lz -lz -lm -lpthread -o convert2blastmask strip convert2blastmask /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f convert2blastmask /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f convert2blastmask /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/convert2blastmask gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blastdb' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blastdb TMPL=blastdbcp -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blastdb/blastdbcp.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blastdb/blastdbcp.cpp -o blastdbcp.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O blastdbcp.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lwritedb -lproteinkmer -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -ldbapi_driver -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lxser -lxcgi -lxhtml -lxconnect -lxutil -lxncbi -lz -lbz2 -llzo2 -lgnutls -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lgcrypt -lgpg-error -lz -lz -lm -lpthread -o blastdbcp strip blastdbcp /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcp /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f blastdbcp /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/blastdbcp gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blastdb' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blastdb TMPL=makeprofiledb -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blastdb/makeprofiledb.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/src/app/blastdb/makeprofiledb.cpp -o makeprofiledb.o /tmp/pkgbuild/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O makeprofiledb.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lwritedb-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -llzo2 -lgnutls -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lgcrypt -lgpg-error -lz -lz -lm -lpthread -o makeprofiledb strip makeprofiledb /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeprofiledb /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f makeprofiledb /tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/makeprofiledb gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blastdb' /usr/pkg/bin/gmake -C vecscreen -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/vecscreen' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/vecscreen' /usr/pkg/bin/gmake -C agpconvert -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/agpconvert' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/agpconvert' /usr/pkg/bin/gmake -C id2_fetch -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/id2_fetch' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/id2_fetch' /usr/pkg/bin/gmake -C agp_validate -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/agp_validate' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/agp_validate' /usr/pkg/bin/gmake -C objextract -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/objextract' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/objextract' /usr/pkg/bin/gmake -C bdb_env_keeper -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/bdb_env_keeper' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/bdb_env_keeper' /usr/pkg/bin/gmake -C nw_aligner -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/nw_aligner' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/nw_aligner' /usr/pkg/bin/gmake -C speedtest -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/speedtest' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/speedtest' /usr/pkg/bin/gmake -C idmapper -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/idmapper' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/idmapper' /usr/pkg/bin/gmake -C formatguess -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/formatguess' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/formatguess' /usr/pkg/bin/gmake -C multireader -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/multireader' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/multireader' /usr/pkg/bin/gmake -C read_blast_result -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/read_blast_result' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/read_blast_result' /usr/pkg/bin/gmake -C splign -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/splign' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/splign' /usr/pkg/bin/gmake -C hfilter -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/hfilter' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/hfilter' /usr/pkg/bin/gmake -C annotwriter -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/annotwriter' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/annotwriter' /usr/pkg/bin/gmake -C compart -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/compart' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/compart' /usr/pkg/bin/gmake -C streamtest -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/streamtest' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/streamtest' /usr/pkg/bin/gmake -C lds2_indexer -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/lds2_indexer' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/lds2_indexer' /usr/pkg/bin/gmake -C discrepancy_report -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/discrepancy_report' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/discrepancy_report' /usr/pkg/bin/gmake -C biosample_chk -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/biosample_chk' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/biosample_chk' /usr/pkg/bin/gmake -C gap_stats -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/gap_stats' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/gap_stats' /usr/pkg/bin/gmake -C table2asn -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/table2asn' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/table2asn' /usr/pkg/bin/gmake -C srcchk -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/srcchk' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/srcchk' /usr/pkg/bin/gmake -C tableval -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/tableval' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/tableval' /usr/pkg/bin/gmake -C ncbi_encrypt -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/ncbi_encrypt' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/ncbi_encrypt' /usr/pkg/bin/gmake -C ssub_fork -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/ssub_fork' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/ssub_fork' /usr/pkg/bin/gmake -C asn_cache -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/asn_cache' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/asn_cache' /usr/pkg/bin/gmake -C magicblast -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/magicblast' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/magicblast' /usr/pkg/bin/gmake -C pub_report -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/pub_report' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/pub_report' /usr/pkg/bin/gmake -C prot_match -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/prot_match' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/prot_match' /usr/pkg/bin/gmake -C gff_deconcat -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/gff_deconcat' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/gff_deconcat' /usr/pkg/bin/gmake -C sub_fuse -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/sub_fuse' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/sub_fuse' NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/pkg/bin/gmake -C split_cache -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/split_cache' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/split_cache' NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/pkg/bin/gmake -C wig2table -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/wig2table' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/wig2table' NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/pkg/bin/gmake -C netcache -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/netcache' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/netcache' NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/pkg/bin/gmake -C rmblastn -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/rmblastn' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/rmblastn' NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/pkg/bin/gmake -C dblb -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/dblb' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/dblb' NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/pkg/bin/gmake -C tls -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/tls' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/tls' NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/pkg/bin/gmake -C idfetch -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/idfetch' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/idfetch' gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app' /usr/pkg/bin/gmake -C sample -w all_r || exit 5 gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/sample' gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/sample' /usr/pkg/bin/gmake -C internal -w all_r || exit 5 gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/internal' gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/internal' gmake[1]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build'