=> Bootstrap dependency digest>=20010302: found digest-20190127 ===> Building for plink-1.07 c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c plink.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c options.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c input.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c binput.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c tinput.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c genome.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c helper.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c stats.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c filters.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c locus.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c multi.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c crandom.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c cluster.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c mds.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c output.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c informative.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c assoc.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c epi.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c prephap.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c phase.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c trio.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c tdt.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c sharing.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c genepi.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c sets.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c perm.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c mh.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c genedrop.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c gxe.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c merge.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c hotel.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c multiple.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c haploCC.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c haploTDT.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c poo.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c webcheck.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c qfam.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c linear.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c bmerge.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c parse.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c mishap.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c legacy.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c homozyg.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c segment.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c model.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c logistic.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c glm.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c dcdflib.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c elf.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c dfam.cpp dcdflib.cpp: In function 'void E0000(int, int*, double*, double*, long unsigned int*, long unsigned int*, double*, double*, double*, double*, double*, double*, double*)': dcdflib.cpp:6025:60: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] dcdflib.cpp: In function 'double dlanor(double*)': dcdflib.cpp:6401:59: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] dcdflib.cpp: In function 'double dstrem(double*)': dcdflib.cpp:6782:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c fisher.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c linput.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c sockets.cpp fisher.cpp: In function 'void fexact(int*, int*, double*, int*, double*, double*, double*, double*, double*, int*)': fisher.cpp:261:61: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] fisher.cpp:267:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] fisher.cpp:273:47: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] fisher.cpp: In function 'void f2xact(int*, int*, double*, int*, double*, double*, double*, double*, double*, double*, int*, int*, int*, int*, int*, int*, int*, int*, double*, int*, int*, double*, double*, double*, int*, int*, double*)': fisher.cpp:448:59: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] fisher.cpp:450:40: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] fisher.cpp:501:59: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] fisher.cpp:509:54: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] fisher.cpp:563:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] fisher.cpp:751:57: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] fisher.cpp: In function 'void f5xact(double*, const double*, int*, int*, int*, int*, double*, int*, int*, int*, int*, int*, int*, int*, int*)': fisher.cpp:1539:57: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] fisher.cpp:1555:52: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] fisher.cpp:1597:57: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] fisher.cpp: In function 'int iwork(int, int*, int, int)': fisher.cpp:2001:37: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] fisher.cpp: In function 'void isort(int*, int*)': fisher.cpp:2078:44: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c lookup.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c proxy.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c pdriver.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c haploQTL.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c haplohelper.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c haplowindow.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c genogroup.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c nonfounderphasing.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c clumpld.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c genoerr.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c em.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c impute.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c metaem.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c profile.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c nlist.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c whap.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c simul.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c gvar.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c cnv.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c step.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c greport.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c flip.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c qualscores.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c cnvqt.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c cfamily.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c setscreen.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c idhelp.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c tag.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c hapglm.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c lookup2.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c blox.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c zed.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c dosage.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c annot.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c metaanal.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c r.cpp c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c Rconnection.cpp In file included from Rconnection.h:42:0, from r.cpp:29: Rsrv.h:324:2: error: #error "Cannot determine endianness. Make sure config.h is included or __{BIG|LITTLE}_ENDIAN__ is defined ." #error "Cannot determine endianness. Make sure config.h is included or __{BIG|LITTLE}_ENDIAN__ is defined ." ^~~~~ distcc[24200] ERROR: compile r.cpp on 10.0.20.122:3640 failed distcc[24200] (dcc_build_somewhere) Warning: remote compilation of 'r.cpp' failed, retrying locally distcc[24200] Warning: failed to distribute r.cpp to 10.0.20.122:3640, running locally instead In file included from Rconnection.h:42:0, from Rconnection.cpp:30: Rsrv.h:324:2: error: #error "Cannot determine endianness. Make sure config.h is included or __{BIG|LITTLE}_ENDIAN__ is defined ." #error "Cannot determine endianness. Make sure config.h is included or __{BIG|LITTLE}_ENDIAN__ is defined ." ^~~~~ distcc[6813] ERROR: compile Rconnection.cpp on 10.0.20.122:3640 failed distcc[6813] (dcc_build_somewhere) Warning: remote compilation of 'Rconnection.cpp' failed, retrying locally distcc[6813] Warning: failed to distribute Rconnection.cpp to 10.0.20.122:3640, running locally instead In file included from Rconnection.h:42:0, from r.cpp:29: Rsrv.h:324:2: error: #error "Cannot determine endianness. Make sure config.h is included or __{BIG|LITTLE}_ENDIAN__ is defined ." #error "Cannot determine endianness. Make sure config.h is included or __{BIG|LITTLE}_ENDIAN__ is defined ." ^~~~~ In file included from Rconnection.h:42:0, from Rconnection.cpp:30: Rsrv.h:324:2: error: #error "Cannot determine endianness. Make sure config.h is included or __{BIG|LITTLE}_ENDIAN__ is defined ." #error "Cannot determine endianness. Make sure config.h is included or __{BIG|LITTLE}_ENDIAN__ is defined ." ^~~~~ c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c zfstream.cpp In file included from Rconnection.cpp:30:0: Rconnection.h: In constructor 'Rsymbol::Rsymbol(Rmessage*)': Rconnection.h:203:12: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] { name=""; fix_content(); } ^~ Rconnection.h: In constructor 'Rsymbol::Rsymbol(unsigned int*, Rmessage*)': Rconnection.h:206:12: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] { name=""; fix_content(); } ^~ c++ -O2 -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c lapackf.cpp Rconnection.cpp: At global scope: Rconnection.cpp:56:20: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] static char *myID= "Rsrv0103QAP1"; /* this client supports up to protocol version 0103 */ ^~~~~~~~~~~~~~ distcc[6813] ERROR: compile Rconnection.cpp on localhost failed gmake: *** [Makefile:159: Rconnection.o] Error 1 gmake: *** Waiting for unfinished jobs.... lapackf.cpp: In function 'bool svd_lapack(int, vector_t&, vector_t&, matrix_t&)': lapackf.cpp:58:104: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] lapackf.cpp:63:100: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] lapackf.cpp: In function 'bool eigen_lapack(int, vector_t&, vector_t&, matrix_t&)': lapackf.cpp:132:10: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] lapackf.cpp:132:10: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] lapackf.cpp:132:10: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] lapackf.cpp:158:10: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] lapackf.cpp:158:10: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] lapackf.cpp:158:10: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] In file included from r.cpp:29:0: Rconnection.h: In constructor 'Rsymbol::Rsymbol(Rmessage*)': Rconnection.h:203:12: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] { name=""; fix_content(); } ^~ Rconnection.h: In constructor 'Rsymbol::Rsymbol(unsigned int*, Rmessage*)': Rconnection.h:206:12: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] { name=""; fix_content(); } ^~ distcc[24200] ERROR: compile r.cpp on localhost failed gmake: *** [Makefile:159: r.o] Error 1 *** Error code 2 Stop. make[1]: stopped in /usr/pkgsrc/biology/plink *** Error code 1 Stop. make: stopped in /usr/pkgsrc/biology/plink