=> Bootstrap dependency digest>=20010302: found digest-20190127 ===> Skipping vulnerability checks. WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found. WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'. ===> Building for ncbi-blast+-2.8.1nb12 if test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.flat; then \ cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build && /usr/pkg/bin/gmake -f Makefile.flat; \ elif test -s ""; then \ cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build && /usr/pkg/bin/gmake -j3 --jobserver-auth=6,7 all_p; \ else \ cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build && /usr/pkg/bin/gmake -j3 --jobserver-auth=6,7 all_r; \ fi gmake[1]: warning: -jN forced in submake: disabling jobserver mode. gmake[1]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/ctools/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/sra/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/gui/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/ctools/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/ctools/Makefile.in test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/sra/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/sra/Makefile.in /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/sample/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/gui/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/gui/Makefile.in /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/internal/Makefile.in` /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT ctools/Makefile test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/sample/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/sample/Makefile.in test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/internal/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/internal/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT sra/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT gui/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/ctools/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/gui/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/sra/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT sample/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT internal/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/sample/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/internal/Makefile /usr/pkg/bin/gmake -C corelib -w -j3 --jobserver-auth=8,9 all_r || exit 5 gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build' gmake[2]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib/test/Makefile gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' /usr/pkg/bin/gmake[4] (Makefile.precompile): Nothing to be done for `all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib TMPL=corelib -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib TMPL=test_mt -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: *** No rule to make target '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' NOTE: skipping project "test_boost" due to unmet requirements gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib TMPL=corelib -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_fast.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/request_status.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_message.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/guard.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_cookies.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbierror.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_url.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_toolkit.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/perf_log.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_autoinit.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/interprocess_lock.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/resource_info.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_strings.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/expr.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/request_control.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/request_ctx.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/version.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/syslog.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/stream_utils.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/rwstreambuf.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/plugin_manager_store.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/plugin_manager.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/obj_store.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbitime.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbithr.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbistre.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbistr.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbireg.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbiobj.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbimtx.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbimempool.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbifile.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbiexpt.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbiexec.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbienv.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbidll.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbidiag_p.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbidiag.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbidbg.cpp. Updating dependency information for ncbicfg.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbiatomic.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbiargs.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbiapp.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_system.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_stack.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_signal.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_safe_static.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_process.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_param.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_config.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/metareg.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/env_reg.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ddumpable.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/blob_storage.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_os_unix.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_os_unix.cpp -o ncbi_os_unix.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/blob_storage.cpp -o blob_storage.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ddumpable.cpp -o ddumpable.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/env_reg.cpp -o env_reg.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/metareg.cpp -o metareg.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_config.cpp -o ncbi_config.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_param.cpp -o ncbi_param.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_process.cpp -o ncbi_process.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_safe_static.cpp -o ncbi_safe_static.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_signal.cpp -o ncbi_signal.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_stack.cpp -o ncbi_stack.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_system.cpp -o ncbi_system.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbiapp.cpp -o ncbiapp.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/b/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbidiag.cpp: In static member function 'static void ncbi::CDiagContext::sx_ThreadDataTlsCleanup(ncbi::CDiagContextThreadData*, void*)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbidiag.cpp:877:67: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] value->GetProperties(CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbidbg.hpp:47:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbidiag.cpp:37: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbidiag.hpp:1813:34: note: declared here NCBI_DEPRECATED TProperties* GetProperties(EGetProperties flag); ^~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::SetProperty(const string&, const string&, ncbi::CDiagContext::EPropertyMode)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbidiag.cpp:1861:49: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Create); /* NCBI_FAKE_WARNING */ ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbidiag.cpp:1012:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^~~~~~~~~~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbidiag.cpp: In member function 'std::__cxx11::string ncbi::CDiagContext::GetProperty(const string&, ncbi::CDiagContext::EPropertyMode) const': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbidiag.cpp:1924:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbidiag.cpp:1012:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^~~~~~~~~~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::DeleteProperty(const string&, ncbi::CDiagContext::EPropertyMode)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbidiag.cpp:1949:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbidiag.cpp:1012:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^~~~~~~~~~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::PrintProperties()': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbidiag.cpp:1981:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbidiag.cpp:1012:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^~~~~~~~~~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbidiag.cpp: In static member function 'static void ncbi::CDiagContext::SetupDiag(ncbi::EAppDiagStream, ncbi::CNcbiRegistry*, ncbi::EDiagCollectMessages, const char*)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbidiag.cpp:3574:48: warning: 'virtual bool ncbi::CNcbiApplication::SetupDiag_AppSpecific()' is deprecated [-Wdeprecated-declarations] app->SetupDiag_AppSpecific(); /* NCBI_FAKE_WARNING */ ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbi_param.hpp:41:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbifile.hpp:48, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbidiag.cpp:39: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbiapp.hpp:362:34: note: declared here NCBI_DEPRECATED virtual bool SetupDiag_AppSpecific(void); ^~~~~~~~~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbifile.cpp: In function 'void ncbi::s_GetFileSystemInfo(const string&, ncbi::CFileUtil::SFileSystemInfo*, ncbi::TFileSystemInfo)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbifile.cpp:5020:10: warning: variable 'need_name_max' set but not used [-Wunused-but-set-variable] bool need_name_max = true; ^~~~~~~~~~~~~ in/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbiargs.cpp -o ncbiargs.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbiatomic.cpp -o ncbiatomic.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include ncbicfg.c -o ncbicfg.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbidbg.cpp -o ncbidbg.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee 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-I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/interprocess_lock.cpp -o interprocess_lock.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_autoinit.cpp -o ncbi_autoinit.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/perf_log.cpp -o perf_log.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_toolkit.cpp -o ncbi_toolkit.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbierror.cpp -o ncbierror.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_url.cpp -o ncbi_url.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_cookies.cpp -o ncbi_cookies.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/guard.cpp -o guard.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_message.cpp -o ncbi_message.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/request_status.cpp -o request_status.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_fast.cpp -o ncbi_fast.o /bin/rm -f libxncbi.a .libxncbi.a.stamp ar cr libxncbi.a ncbi_os_unix.o blob_storage.o ddumpable.o env_reg.o metareg.o ncbi_config.o ncbi_param.o ncbi_process.o ncbi_safe_static.o ncbi_signal.o ncbi_stack.o ncbi_system.o ncbiapp.o ncbiargs.o ncbiatomic.o ncbicfg.o ncbidbg.o ncbidiag.o ncbidiag_p.o ncbidll.o ncbienv.o ncbiexec.o ncbiexpt.o ncbifile.o ncbimempool.o ncbimtx.o ncbiobj.o ncbireg.o ncbistr.o ncbistre.o ncbithr.o ncbitime.o obj_store.o plugin_manager.o plugin_manager_store.o rwstreambuf.o stream_utils.o syslog.o version.o request_ctx.o request_control.o expr.o ncbi_strings.o resource_info.o interprocess_lock.o ncbi_autoinit.o perf_log.o ncbi_toolkit.o ncbierror.o ncbi_url.o ncbi_cookies.o guard.o ncbi_message.o request_status.o ncbi_fast.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxncbi.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxncbi.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxncbi.a /bin/ln -f .xncbi.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xncbi.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib TMPL=test_mt -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/test_mt.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/test_mt.cpp -o test_mt.o /bin/rm -f libtest_mt.a .libtest_mt.a.stamp ar cr libtest_mt.a test_mt.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtest_mt.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libtest_mt.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libtest_mt.a /bin/ln -f .test_mt.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.test_mt.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: *** No rule to make target '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' NOTE: skipping project "test_boost" due to unmet requirements gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' /usr/pkg/bin/gmake -C test -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib/test' gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' /usr/pkg/bin/gmake -C util -w -j3 --jobserver-auth=8,9 all_r || exit 5 gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build' gmake[2]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/diff/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/image/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/qparse/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/diff/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/diff/Makefile.in test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/image/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/image/Makefile.in /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/demo/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/test/Makefile.in test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/demo/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/demo/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT diff/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT image/Makefile test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/qparse/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/qparse/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/image/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/diff/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT demo/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT qparse/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/demo/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/qparse/Makefile gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util TMPL=util -w -j3 --jobserver-auth=10,11 export-headers gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' gmake[3]: Nothing to be done for 'export-headers'. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util TMPL=util -w -j3 --jobserver-auth=10,11 all gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/multipattern_search.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/cache_async.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/file_manifest.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/stream_source.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/retry_ctx.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/table_printer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/histogram_binning.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/util_misc.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/rangelist.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/scheduler.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/distribution.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/thread_pool_ctrl.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/thread_pool.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/itransaction.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/multi_writer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/uttp.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/util_exception.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/line_reader.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/ncbi_cache.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/mutex_pool.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/miscmath.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/transmissionrw.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/static_set.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/sgml_entity.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/thread_nonstop.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/dictionary_util.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/dictionary.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/unicode.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/file_obsolete.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/md5.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/ascii85.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/format_guess.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/logrotate.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/strsearch.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/ddump_viewer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/thread_pool_old.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/smalldns.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/itree.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/strbuffer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/bytesrc.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/checksum_farmhash.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/checksum_cityhash.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/checksum.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/random_gen.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/utf8.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/random_gen.cpp -o random_gen.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/utf8.cpp -o utf8.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG 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/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/checksum_cityhash.cpp -o checksum_cityhash.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/checksum_farmhash.cpp -o checksum_farmhash.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/bytesrc.cpp -o bytesrc.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/strbuffer.cpp -o strbuffer.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/itree.cpp -o itree.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/smalldns.cpp -o smalldns.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/thread_pool_old.cpp -o thread_pool_old.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/ddump_viewer.cpp -o ddump_viewer.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/strsearch.cpp -o strsearch.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/logrotate.cpp -o logrotate.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/format_guess.cpp -o format_guess.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/ascii85.cpp -o ascii85.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/dictionary_util.cpp: In static member function 'static void ncbi::CDictionaryUtil::Stem(const string&, std::__cxx11::string*)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/dictionary_util.cpp:709:17: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/dictionary_util.cpp:709:17: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/dictionary_util.cpp:709:17: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/dictionary_util.cpp:709:17: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/dictionary_util.cpp:709:17: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/dictionary_util.cpp:709:17: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/dictionary_util.cpp:709:17: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/dictionary_util.cpp:709:17: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/dictionary_util.cpp:709:17: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^~~~ -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/md5.cpp -o md5.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/file_obsolete.cpp -o file_obsolete.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/unicode.cpp -o unicode.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/dictionary.cpp -o dictionary.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/dictionary_util.cpp -o dictionary_util.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/thread_nonstop.cpp -o thread_nonstop.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/sgml_entity.cpp -o sgml_entity.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/static_set.cpp -o static_set.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/transmissionrw.cpp -o transmissionrw.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/miscmath.c -o miscmath.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/mutex_pool.cpp -o mutex_pool.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/ncbi_cache.cpp -o ncbi_cache.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/line_reader.cpp -o line_reader.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/util_exception.cpp -o util_exception.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/uttp.cpp -o uttp.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/multi_writer.cpp -o multi_writer.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/itransaction.cpp -o itransaction.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/thread_pool.cpp -o thread_pool.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/thread_pool_ctrl.cpp -o thread_pool_ctrl.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/scheduler.cpp -o scheduler.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/distribution.cpp -o distribution.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/rangelist.cpp -o rangelist.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/util_misc.cpp -o util_misc.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/histogram_binning.cpp -o histogram_binning.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/table_printer.cpp -o table_printer.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/retry_ctx.cpp -o retry_ctx.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/stream_source.cpp -o stream_source.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/file_manifest.cpp -o file_manifest.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/cache_async.cpp -o cache_async.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/multipattern_search.cpp -o multipattern_search.o /bin/rm -f libxutil.a .libxutil.a.stamp ar cr libxutil.a random_gen.o utf8.o checksum.o checksum_cityhash.o checksum_farmhash.o bytesrc.o strbuffer.o itree.o smalldns.o thread_pool_old.o ddump_viewer.o strsearch.o logrotate.o format_guess.o ascii85.o md5.o file_obsolete.o unicode.o dictionary.o dictionary_util.o thread_nonstop.o sgml_entity.o static_set.o transmissionrw.o miscmath.o mutex_pool.o ncbi_cache.o line_reader.o util_exception.o uttp.o multi_writer.o itransaction.o thread_pool.o thread_pool_ctrl.o scheduler.o distribution.o rangelist.o util_misc.o histogram_binning.o table_printer.o retry_ctx.o stream_source.o file_manifest.o cache_async.o multipattern_search.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxutil.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxutil.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxutil.a /bin/ln -f .xutil.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xutil.dep gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' /usr/pkg/bin/gmake -C regexp -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. NOTE: Skipping project regexp due to unmet requirements: LocalPCRE gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/regexp' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/regexp' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/regexp' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/regexp' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/regexp' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/regexp TMPL=regexp -w -j3 --jobserver-auth=14,15 mark-as-disabled gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/regexp' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/regexp' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/regexp' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/regexp' /usr/pkg/bin/gmake -C xregexp -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/xregexp TMPL=xregexp -w -j3 --jobserver-auth=14,15 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/xregexp TMPL=xregexp_template_tester -w -j3 --jobserver-auth=14,15 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/xregexp TMPL=xregexp -w -j3 --jobserver-auth=14,15 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/xregexp/mask_regexp.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/xregexp/arg_regexp.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/xregexp/regexp.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include -I/usr/pkg/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/xregexp/regexp.cpp -o regexp.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include -I/usr/pkg/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/xregexp/arg_regexp.cpp -o arg_regexp.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include -I/usr/pkg/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/xregexp/mask_regexp.cpp -o mask_regexp.o /bin/rm -f libxregexp.a .libxregexp.a.stamp ar cr libxregexp.a regexp.o arg_regexp.o mask_regexp.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxregexp.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxregexp.a /bin/ln -f .xregexp.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xregexp.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/xregexp TMPL=xregexp_template_tester -w -j3 --jobserver-auth=14,15 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/xregexp/regexp_template_tester.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/xregexp/regexp_template_tester.cpp -o regexp_template_tester.o /bin/rm -f libxregexp_template_tester.a .libxregexp_template_tester.a.stamp ar cr libxregexp_template_tester.a regexp_template_tester.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp_template_tester.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxregexp_template_tester.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxregexp_template_tester.a /bin/ln -f .xregexp_template_tester.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xregexp_template_tester.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' /usr/pkg/bin/gmake -C compress -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -C bzip2 -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. NOTE: Skipping project bzip2 due to unmet requirements: LocalBZ2 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/bzip2' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/bzip2 TMPL=bzip2 -w -j3 --jobserver-auth=16,17 mark-as-disabled gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/bzip2' /usr/pkg/bin/gmake -C zlib -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. NOTE: Skipping project zlib due to unmet requirements: LocalZ gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/zlib' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/zlib TMPL=zlib -w -j3 --jobserver-auth=16,17 mark-as-disabled gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/zlib' /usr/pkg/bin/gmake -C api -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/api' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api TMPL=compress -w -j3 --jobserver-auth=14,15 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/api' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api TMPL=compress -w -j3 --jobserver-auth=14,15 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/archive_zip.cpp:45:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/miniz/miniz.c: In function 'ncbi::tinfl_status ncbi::tinfl_decompress(ncbi::tinfl_decompressor*, const mz_uint8*, size_t*, ncbi::mz_uint8*, ncbi::mz_uint8*, size_t*, ncbi::mz_uint32)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/miniz/miniz.c:1531:9: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for ( i = 0; i <= 143; ++i) *p++ = 8; for ( ; i <= 255; ++i) *p++ = 9; for ( ; i <= 279; ++i) *p++ = 7; for ( ; i <= 287; ++i) *p++ = 8; ^~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/miniz/miniz.c:1531:47: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' for ( i = 0; i <= 143; ++i) *p++ = 8; for ( ; i <= 255; ++i) *p++ = 9; for ( ; i <= 279; ++i) *p++ = 7; for ( ; i <= 287; ++i) *p++ = 8; ^~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/miniz/miniz.c: In function 'void ncbi::tdefl_find_match(ncbi::tdefl_compressor*, ncbi::mz_uint, ncbi::mz_uint, ncbi::mz_uint, ncbi::mz_uint*, ncbi::mz_uint*)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/miniz/miniz.c:2361:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!dist) break; p = s; q = d->m_dict + probe_pos; for (probe_len = 0; probe_len < max_match_len; probe_len++) if (*p++ != *q++) break; ^~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/miniz/miniz.c:2361:23: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!dist) break; p = s; q = d->m_dict + probe_pos; for (probe_len = 0; probe_len < max_match_len; probe_len++) if (*p++ != *q++) break; ^ gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/api' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/archive_zip.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/archive_.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/archive.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/tar.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/reader_zlib.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/lzo.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/zlib.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/bzip2.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/stream_util.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/streambuf.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/stream.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/compress.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/compress.cpp -o compress.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/stream.cpp -o stream.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/streambuf.cpp -o streambuf.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/stream_util.cpp -o stream_util.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/bzip2.cpp -o bzip2.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/zlib.cpp -o zlib.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/lzo.cpp -o lzo.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/reader_zlib.cpp -o reader_zlib.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/tar.cpp -o tar.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/archive.cpp -o archive.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/archive_.cpp -o archive_.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/archive_zip.cpp -o archive_zip.o /bin/rm -f libxcompress.a .libxcompress.a.stamp ar cr libxcompress.a compress.o stream.o streambuf.o stream_util.o bzip2.o zlib.o lzo.o reader_zlib.o tar.o archive.o archive_.o archive_zip.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcompress.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxcompress.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxcompress.a /bin/ln -f .xcompress.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xcompress.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress' /usr/pkg/bin/gmake -C diff -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/diff' /usr/pkg/bin/gmake -C image -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/image' /usr/pkg/bin/gmake -C tables -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/tables/test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/tables/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/tables/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/tables/test/Makefile gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/tables' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/tables' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/tables' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/tables TMPL=tables -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/tables' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/tables' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/tables' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/tables TMPL=tables -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/tables' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/tables/raw_scoremat.c. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/tables/raw_scoremat.c -o raw_scoremat.o /bin/rm -f libtables.a .libtables.a.stamp ar cr libtables.a raw_scoremat.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtables.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libtables.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libtables.a /bin/ln -f .tables.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.tables.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/tables' /usr/pkg/bin/gmake -C test -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/tables' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/tables/test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/tables' /usr/pkg/bin/gmake -C creaders -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/creaders' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/creaders' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/creaders' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/creaders' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/creaders TMPL=creaders -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/creaders' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/creaders' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/creaders' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/creaders' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/creaders' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/creaders' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/creaders TMPL=creaders -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/creaders' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/creaders/alnread.c. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/creaders/alnread.c -o alnread.o /bin/rm -f libcreaders.a .libcreaders.a.stamp ar cr libcreaders.a alnread.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcreaders.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libcreaders.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libcreaders.a /bin/ln -f .creaders.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.creaders.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/creaders' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/creaders' /usr/pkg/bin/gmake -C sequtil -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/sequtil' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/sequtil TMPL=sequtil -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/sequtil' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/sequtil TMPL=sequtil -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/sequtil' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/sequtil/sequtil_shared.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/sequtil/sequtil_tables.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/sequtil/sequtil_manip.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/sequtil/sequtil_convert.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/sequtil/sequtil.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/sequtil/sequtil.cpp -o sequtil.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/sequtil/sequtil_convert.cpp -o sequtil_convert.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp -o sequtil_convert_imp.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/sequtil/sequtil_manip.cpp -o sequtil_manip.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/sequtil/sequtil_tables.cpp -o sequtil_tables.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/sequtil/sequtil_shared.cpp -o sequtil_shared.o /bin/rm -f libsequtil.a .libsequtil.a.stamp ar cr libsequtil.a sequtil.o sequtil_convert.o sequtil_convert_imp.o sequtil_manip.o sequtil_tables.o sequtil_shared.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsequtil.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libsequtil.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libsequtil.a /bin/ln -f .sequtil.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.sequtil.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/sequtil' /usr/pkg/bin/gmake -C bitset -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/bitset/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/bitset/demo/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/bitset/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/bitset/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT test/Makefile test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/bitset/demo/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/bitset/demo/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT demo/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/bitset/test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/bitset/demo/Makefile /usr/pkg/bin/gmake -C test -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/bitset' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/bitset/test' /usr/pkg/bin/gmake -C demo -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/bitset' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/bitset/demo' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/bitset' /usr/pkg/bin/gmake -C qparse -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/qparse' /usr/pkg/bin/gmake -C lmdb -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. NOTE: Skipping project lmdb due to unmet requirements: LocalLMDB gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/lmdb' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/lmdb' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/lmdb' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/lmdb' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: *** No rule to make target '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/LocalLMDB.enabled', needed by 'requirements'. Stop. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/lmdb' NOTE: skipping project "lmdb" due to unmet requirements gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/lmdb' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/lmdb' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/lmdb' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/lmdb' /usr/pkg/bin/gmake -C lmdbxx -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/lmdbxx' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/lmdbxx TMPL=lmdbxx_sample -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/lmdbxx' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/lmdbxx/example.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/util/lmdbxx -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/lmdbxx/example.cpp -o example.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O example.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -llmdb -lpthread -lm -lpthread -o lmdbxx_sample strip lmdbxx_sample /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f lmdbxx_sample /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin /bin/ln -f lmdbxx_sample /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/lmdbxx_sample gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/lmdbxx' /usr/pkg/bin/gmake -C test -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/test' /usr/pkg/bin/gmake -C demo -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/demo' gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' /usr/pkg/bin/gmake -C connect -w -j3 --jobserver-auth=8,9 all_r || exit 5 gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build' gmake[2]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ext/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/daemons/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ext/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ext/Makefile.in test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/daemons/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/daemons/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT ext/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT daemons/Makefile test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/ext/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/daemons/Makefile gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect TMPL=connssl -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect TMPL=connect -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect TMPL=xxconnect -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect TMPL=xconnect -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect TMPL=xthrserv -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect TMPL=connssl -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' /bin/mkdir -p mbedtls Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ssl_tls.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ssl_ticket.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ssl_srv.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ssl_cookie.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ssl_cli.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ssl_ciphersuites.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ssl_cache.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/net_sockets.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/debug.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/x509write_csr.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/x509write_crt.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/x509_csr.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/x509_crt.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/x509_crl.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/x509_create.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/x509.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/pkcs11.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/certs.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/xtea.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/version_features.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/mbedtls_version.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/timing.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/threading.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/sha512.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/sha256.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/sha1.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/rsa.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ripemd160.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/platform.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/pkwrite.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/pkparse.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/pkcs5.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/pkcs12.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/pk_wrap.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/pk.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/pem.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/padlock.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/oid.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/memory_buffer_alloc.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/md_wrap.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/mbedtls_md5.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/md4.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/md2.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/md.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/hmac_drbg.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/havege.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/gcm.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/error.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/entropy_poll.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/entropy.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ecp_curves.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ecp.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ecjpake.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ecdsa.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ecdh.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/dhm.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/des.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ctr_drbg.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/cmac.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/cipher_wrap.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/cipher.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ccm.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/camellia.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/blowfish.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/bignum.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/base64.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/asn1write.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/asn1parse.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/arc4.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/aesni.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/aes.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_tls.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_mbedtls.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_gnutls.c. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_gnutls.c -o ncbi_gnutls.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include 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-I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/sha1.c -o mbedtls/sha1.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc 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-Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/threading.c -o mbedtls/threading.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/timing.c -o mbedtls/timing.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/mbedtls_version.c -o mbedtls/mbedtls_version.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/version_features.c -o mbedtls/version_features.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/net_sockets.c: In function 'mbedtls_net_accept_ncbicxx_2_4_2': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/net_sockets.c:316:37: warning: pointer targets in passing argument 5 of 'getsockopt' differ in signedness [-Wpointer-sign] (void *) &type, &type_len ) != 0 || ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/net_sockets.c:75:0: /usr/include/sys/socket.h:626:5: note: expected '__socklen_t * restrict {aka unsigned int * restrict}' but argument is of type 'int *' int getsockopt(int, int, int, void *__restrict, socklen_t * __restrict); ^~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/net_sockets.c:326:80: warning: pointer targets in passing argument 3 of 'accept' differ in signedness [-Wpointer-sign] (struct sockaddr *) &client_addr, &n ); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/net_sockets.c:75:0: /usr/include/sys/socket.h:620:5: note: expected '__socklen_t * restrict {aka unsigned int * restrict}' but argument is of type 'int *' int accept(int, struct sockaddr * __restrict, socklen_t * __restrict); ^~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/net_sockets.c:334:59: warning: pointer targets in passing argument 6 of 'recvfrom' differ in signedness [-Wpointer-sign] (struct sockaddr *) &client_addr, &n ); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/net_sockets.c:75:0: /usr/include/sys/socket.h:632:9: note: expected '__socklen_t * restrict {aka unsigned int * restrict}' but argument is of type 'int *' ssize_t recvfrom(int, void *__restrict, size_t, int, ^~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/net_sockets.c:369:59: warning: pointer targets in passing argument 3 of 'getsockname' differ in signedness [-Wpointer-sign] (struct sockaddr *) &local_addr, &n ) != 0 || ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/net_sockets.c:75:0: /usr/include/sys/socket.h:625:5: note: expected '__socklen_t * restrict {aka unsigned int * restrict}' but argument is of type 'int *' int getsockname(int, struct sockaddr * __restrict, socklen_t * __restrict); ^~~~~~~~~~~ -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/xtea.c -o mbedtls/xtea.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/certs.c -o mbedtls/certs.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/pkcs11.c -o mbedtls/pkcs11.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/x509.c -o mbedtls/x509.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/x509_create.c -o mbedtls/x509_create.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/x509_crl.c -o mbedtls/x509_crl.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/x509_crt.c -o mbedtls/x509_crt.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/x509_csr.c -o mbedtls/x509_csr.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/x509write_crt.c -o mbedtls/x509write_crt.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/x509write_csr.c -o mbedtls/x509write_csr.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/debug.c -o mbedtls/debug.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/net_sockets.c -o mbedtls/net_sockets.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ssl_cache.c -o mbedtls/ssl_cache.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ssl_ciphersuites.c -o mbedtls/ssl_ciphersuites.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ssl_cli.c -o mbedtls/ssl_cli.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ssl_cookie.c -o mbedtls/ssl_cookie.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ssl_srv.c -o mbedtls/ssl_srv.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ssl_ticket.c -o mbedtls/ssl_ticket.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ssl_tls.c -o mbedtls/ssl_tls.o /bin/rm -f libconnssl.a .libconnssl.a.stamp ar cr libconnssl.a ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o mbedtls/aes.o mbedtls/aesni.o mbedtls/arc4.o mbedtls/asn1parse.o mbedtls/asn1write.o mbedtls/base64.o mbedtls/bignum.o mbedtls/blowfish.o mbedtls/camellia.o mbedtls/ccm.o mbedtls/cipher.o mbedtls/cipher_wrap.o mbedtls/cmac.o mbedtls/ctr_drbg.o mbedtls/des.o mbedtls/dhm.o mbedtls/ecdh.o mbedtls/ecdsa.o mbedtls/ecjpake.o mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/md_wrap.o mbedtls/memory_buffer_alloc.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnssl.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libconnssl.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libconnssl.a /bin/ln -f .connssl.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.connssl.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect TMPL=connect -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_Attach': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_heapmgr.c:341:68: warning: variable 'p' set but not used [-Wunused-but-set-variable] const SHEAP_HeapBlock* b = (const SHEAP_HeapBlock*) base, *p = 0; ^ gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_localip.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_iprange.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_ipv6.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/parson.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_namerd.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_linkerd.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_lbos.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_version.c. 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Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_host_info.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_service.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_server_info.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_heapmgr.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_memory_connector.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_http_connector.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_file_connector.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_socket_connector.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_connector.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_connection.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_connutil.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_socket.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_util.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_core.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_priv.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_types.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_buffer.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_ansi_ext.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_lbsmd_stub.c. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_lbsmd_stub.c -o ncbi_lbsmd_stub.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 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-I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_connutil.c -o ncbi_connutil.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_connection.c -o ncbi_connection.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_connector.c -o ncbi_connector.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_socket_connector.c -o ncbi_socket_connector.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_file_connector.c -o ncbi_file_connector.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_http_connector.c -o ncbi_http_connector.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_memory_connector.c -o ncbi_memory_connector.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_heapmgr.c -o ncbi_heapmgr.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/bi/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/parson.c: In function 'remove_comments': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/parson.c:281:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for (i = 0; i < (ptr - string) + end_token_len; i++) ^~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/parson.c:283:12: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' string = ptr + end_token_len - 1; ^~~~~~ ology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_server_info.c -o ncbi_server_info.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_service.c -o ncbi_service.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_host_info.c -o ncbi_host_info.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_dispd.c -o ncbi_dispd.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_service_connector.c -o ncbi_service_connector.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_sendmail.c -o ncbi_sendmail.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_ftp_connector.c -o ncbi_ftp_connector.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_lb.c -o ncbi_lb.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_local.c -o ncbi_local.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_base64.c -o ncbi_base64.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_version.c -o ncbi_version.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_lbos.c -o ncbi_lbos.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_linkerd.c -o ncbi_linkerd.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_namerd.c -o ncbi_namerd.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/parson.c -o parson.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_ipv6.c -o ncbi_ipv6.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_iprange.c -o ncbi_iprange.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_localip.c -o ncbi_localip.o /bin/rm -f libconnect.a .libconnect.a.stamp ar cr libconnect.a ncbi_lbsmd_stub.o ncbi_ansi_ext.o ncbi_buffer.o ncbi_types.o ncbi_priv.o ncbi_core.o ncbi_util.o ncbi_socket.o ncbi_connutil.o ncbi_connection.o ncbi_connector.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_heapmgr.o ncbi_server_info.o ncbi_service.o ncbi_host_info.o ncbi_dispd.o ncbi_service_connector.o ncbi_sendmail.o ncbi_ftp_connector.o ncbi_lb.o ncbi_local.o ncbi_base64.o ncbi_version.o ncbi_lbos.o ncbi_linkerd.o ncbi_namerd.o parson.o ncbi_ipv6.o ncbi_iprange.o ncbi_localip.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnect.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libconnect.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libconnect.a /bin/ln -f .connect.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.connect.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect TMPL=xxconnect -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_service_cxx.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_monkey.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_lbos_cxx.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_http_session.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_userhost.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_conn_reader_writer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_pipe_connector.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_pipe.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_namedpipe_connector.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_namedpipe.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_misc.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_conn_test.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_conn_stream.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_conn_streambuf.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/email_diag_handler.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_core_cxx.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_socket_cxx.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include 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-fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_monkey.cpp -o ncbi_monkey.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_service_cxx.cpp -o ncbi_service_cxx.o /bin/rm -f libxxconnect.a .libxxconnect.a.stamp ar cr libxxconnect.a ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o ncbi_http_session.o ncbi_lbos_cxx.o ncbi_monkey.o ncbi_service_cxx.o ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o mbedtls/aes.o mbedtls/aesni.o mbedtls/arc4.o mbedtls/asn1parse.o mbedtls/asn1write.o mbedtls/base64.o mbedtls/bignum.o mbedtls/blowfish.o mbedtls/camellia.o mbedtls/ccm.o mbedtls/cipher.o mbedtls/cipher_wrap.o mbedtls/cmac.o mbedtls/ctr_drbg.o mbedtls/des.o mbedtls/dhm.o mbedtls/ecdh.o mbedtls/ecdsa.o mbedtls/ecjpake.o mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/md_wrap.o mbedtls/memory_buffer_alloc.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxxconnect.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxxconnect.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxxconnect.a /bin/ln -f .xxconnect.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xxconnect.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect TMPL=xconnect -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' /bin/rm -f libxconnect.a .libxconnect.a.stamp ar cr libxconnect.a ncbi_lbsmd_stub.o ncbi_ansi_ext.o ncbi_buffer.o ncbi_types.o ncbi_priv.o ncbi_core.o ncbi_util.o ncbi_socket.o ncbi_connutil.o ncbi_connection.o ncbi_connector.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_heapmgr.o ncbi_server_info.o ncbi_service.o ncbi_host_info.o ncbi_dispd.o ncbi_service_connector.o ncbi_sendmail.o ncbi_ftp_connector.o ncbi_lb.o ncbi_local.o ncbi_base64.o ncbi_version.o ncbi_lbos.o ncbi_linkerd.o ncbi_namerd.o parson.o ncbi_ipv6.o ncbi_iprange.o ncbi_localip.o ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o ncbi_http_session.o ncbi_lbos_cxx.o ncbi_monkey.o ncbi_service_cxx.o ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o mbedtls/aes.o mbedtls/aesni.o mbedtls/arc4.o mbedtls/asn1parse.o mbedtls/asn1write.o mbedtls/base64.o mbedtls/bignum.o mbedtls/blowfish.o mbedtls/camellia.o mbedtls/ccm.o mbedtls/cipher.o mbedtls/cipher_wrap.o mbedtls/cmac.o mbedtls/ctr_drbg.o mbedtls/des.o mbedtls/dhm.o mbedtls/ecdh.o mbedtls/ecdsa.o mbedtls/ecjpake.o mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/md_wrap.o mbedtls/memory_buffer_alloc.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnect.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxconnect.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxconnect.a /bin/ln -f .xconnect.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xconnect.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect TMPL=xthrserv -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/threaded_server.cpp:47:54: warning: 'CThreadedServer' is deprecated [-Wdeprecated-declarations] CSocketRequest(CThreadedServer& server, SOCK sock) // NCBI_FAKE_WARNING ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/threaded_server.cpp:33:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/connect/threaded_server.hpp:77:44: note: declared here NCBI_DEPRECATED_CLASS NCBI_XCONNECT_EXPORT CThreadedServer ^~~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/threaded_server.cpp:52:22: warning: 'CThreadedServer' is deprecated [-Wdeprecated-declarations] CThreadedServer& m_Server; // NCBI_FAKE_WARNING ^~~~~~~~ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/threaded_server.cpp:33:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/connect/threaded_server.hpp:77:44: note: declared here NCBI_DEPRECATED_CLASS NCBI_XCONNECT_EXPORT CThreadedServer ^~~~~~~~~~~~~~~ gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/connection_pool.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/server_monitor.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/server.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/threaded_server.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/threaded_server.cpp -o threaded_server.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/server.cpp -o server.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/server_monitor.cpp -o server_monitor.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/connection_pool.cpp -o connection_pool.o /bin/rm -f libxthrserv.a .libxthrserv.a.stamp ar cr libxthrserv.a threaded_server.o server.o server_monitor.o connection_pool.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxthrserv.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxthrserv.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxthrserv.a /bin/ln -f .xthrserv.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xthrserv.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -C services -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services/test/Makefile gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services TMPL=xconnserv -w -j3 --jobserver-auth=14,15 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services TMPL=ncbi_xcache_netcache -w -j3 --jobserver-auth=14,15 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services TMPL=ncbi_xblobstorage_netcache -w -j3 --jobserver-auth=14,15 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services TMPL=xconnserv -w -j3 --jobserver-auth=14,15 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/netschedule_api_wn_info.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/compound_id_v0.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/compound_id.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/ns_job_serializer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/ns_output_parser.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/netstorage_direct_nc.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/netstorageobjectinfo.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/netstorageobjectloc.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/netstorage_rpc.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/netstorage.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/json_over_uttp.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/clparser.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/util.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/netservice_protocol_parser.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/netcache_search.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/netcache_api_admin.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/netcache_api.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/netcache_params.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/netcache_rw.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/netcache_key.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/netschedule_api_expt.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/netschedule_key.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/netschedule_api_getjob.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/netschedule_api_admin.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/netschedule_api_reader.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/netschedule_api_executor.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/netschedule_api_submitter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/netschedule_api.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/netservice_params.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/netservice_api.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/srv_connections.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/remote_app.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/grid_rw_impl.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/grid_globals.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/grid_control_thread.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/wn_offline_mode.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/wn_cleanup.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/wn_main_loop.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/wn_commit_thread.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/grid_client_app.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/grid_client.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/grid_worker_app.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/ns_client_factory.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/grid_worker.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/grid_worker.cpp -o grid_worker.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/ns_client_factory.cpp -o ns_client_factory.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/grid_worker_app.cpp -o grid_worker_app.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/grid_client.cpp -o grid_client.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/grid_client_app.cpp -o grid_client_app.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/wn_commit_thread.cpp -o wn_commit_thread.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/wn_main_loop.cpp -o wn_main_loop.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/wn_cleanup.cpp -o wn_cleanup.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/wn_offline_mode.cpp -o wn_offline_mode.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/grid_control_thread.cpp -o grid_control_thread.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/grid_globals.cpp -o grid_globals.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/grid_rw_impl.cpp -o grid_rw_impl.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/remote_app.cpp -o remote_app.o 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/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/ns_output_parser.cpp -o ns_output_parser.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/ns_job_serializer.cpp -o ns_job_serializer.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/compound_id.cpp -o compound_id.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/compound_id_v0.cpp -o compound_id_v0.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/netschedule_api_wn_info.cpp -o netschedule_api_wn_info.o /bin/rm -f libxconnserv.a .libxconnserv.a.stamp ar cr libxconnserv.a grid_worker.o ns_client_factory.o grid_worker_app.o grid_client.o grid_client_app.o wn_commit_thread.o wn_main_loop.o wn_cleanup.o wn_offline_mode.o grid_control_thread.o grid_globals.o grid_rw_impl.o remote_app.o srv_connections.o netservice_api.o netservice_params.o netschedule_api.o netschedule_api_submitter.o netschedule_api_executor.o netschedule_api_reader.o netschedule_api_admin.o netschedule_api_getjob.o netschedule_key.o netschedule_api_expt.o netcache_key.o netcache_rw.o netcache_params.o netcache_api.o netcache_api_admin.o netcache_search.o netservice_protocol_parser.o util.o clparser.o json_over_uttp.o netstorage.o netstorage_rpc.o netstorageobjectloc.o netstorageobjectinfo.o netstorage_direct_nc.o ns_output_parser.o ns_job_serializer.o compound_id.o compound_id_v0.o netschedule_api_wn_info.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnserv.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxconnserv.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxconnserv.a /bin/ln -f .xconnserv.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xconnserv.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services TMPL=ncbi_xcache_netcache -w -j3 --jobserver-auth=14,15 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/neticache_client.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/neticache_client.cpp -o neticache_client.o /bin/rm -f libncbi_xcache_netcache.a .libncbi_xcache_netcache.a.stamp /bin/rm -f libncbi_xcache_netcache-dll.so .libncbi_xcache_netcache-dll.so.stamp ar cr libncbi_xcache_netcache.a neticache_client.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -shared -o libncbi_xcache_netcache-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O -fPIC neticache_client.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -lxconnserv -lxconnect -lxutil -lm -lpthread /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_netcache.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xcache_netcache.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libncbi_xcache_netcache.a /bin/ln -f .ncbi_xcache_netcache.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.ncbi_xcache_netcache.dep /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_netcache-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xcache_netcache-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libncbi_xcache_netcache-dll.so /bin/ln -f .ncbi_xcache_netcache-dll.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.ncbi_xcache_netcache-dll.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services TMPL=ncbi_xblobstorage_netcache -w -j3 --jobserver-auth=14,15 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/blob_storage_netcache.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/blob_storage_netcache.cpp -o blob_storage_netcache.o /bin/rm -f libncbi_xblobstorage_netcache.a .libncbi_xblobstorage_netcache.a.stamp ar cr libncbi_xblobstorage_netcache.a blob_storage_netcache.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xblobstorage_netcache.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xblobstorage_netcache.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libncbi_xblobstorage_netcache.a /bin/ln -f .ncbi_xblobstorage_netcache.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.ncbi_xblobstorage_netcache.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' /usr/pkg/bin/gmake -C test -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services/test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' /usr/pkg/bin/gmake -C ext -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/ext' /usr/pkg/bin/gmake -C test -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/test' /usr/pkg/bin/gmake -C daemons -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/daemons' gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -C cgi -w -j3 --jobserver-auth=8,9 all_r || exit 5 gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build' gmake[2]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi/test/Makefile gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi TMPL=cgi -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi TMPL=fcgi -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi TMPL=cgi -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/user_agent.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/cgi_entry_reader.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/cgiapp_cached.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/cgi_exception.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/cgi_session.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/cgi_serial.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/cgi_util.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/cgi_run.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/ref_args.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/ncbires.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/ncbicgir.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/cgictx.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/cgiapp.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/ncbicgi.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/ncbicgi.cpp -o ncbicgi.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/cgiapp.cpp -o cgiapp.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/cgictx.cpp -o cgictx.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/ncbicgir.cpp -o ncbicgir.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/ncbires.cpp -o ncbires.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/ref_args.cpp -o ref_args.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/cgi_run.cpp -o cgi_run.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/cgi_util.cpp -o cgi_util.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/cgi_serial.cpp -o cgi_serial.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/cgi_session.cpp -o cgi_session.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/cgi_exception.cpp -o cgi_exception.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/cgiapp_cached.cpp -o cgiapp_cached.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/cgi_entry_reader.cpp -o cgi_entry_reader.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/user_agent.cpp -o user_agent.o /bin/rm -f libxcgi.a .libxcgi.a.stamp ar cr libxcgi.a ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_run.o cgi_util.o cgi_serial.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcgi.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxcgi.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxcgi.a /bin/ln -f .xcgi.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xcgi.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi TMPL=fcgi -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/fcgi_run.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include -DNCBI_XFCGI_EXPORTS /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/fcgi_run.cpp -o fcgi_run.o /bin/rm -f libxfcgi.a .libxfcgi.a.stamp ar cr libxfcgi.a ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_util.o cgi_serial.o fcgi_run.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxfcgi.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxfcgi.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxfcgi.a /bin/ln -f .xfcgi.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xfcgi.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' /usr/pkg/bin/gmake -C test -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi/test' gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' /usr/pkg/bin/gmake -C html -w -j3 --jobserver-auth=8,9 all_r || exit 5 gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build' gmake[2]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html/demo/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT test/Makefile test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html/demo/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html/demo/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT demo/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/html/test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/html/demo/Makefile gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/html' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/html' gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/html' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/html' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html TMPL=html -w -j3 --jobserver-auth=10,11 export-headers gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/html' gmake[3]: Nothing to be done for 'export-headers'. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/html' gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/html' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/html' gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/html' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/html' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html TMPL=html -w -j3 --jobserver-auth=10,11 all gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/html' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html/writer_htmlenc.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html/html_exception.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html/indentstream.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html/commentdiag.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html/components.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html/selection.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html/pager.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html/page.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html/htmlhelper.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html/html.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html/node.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html/node.cpp -o node.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html/html.cpp -o html.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html/htmlhelper.cpp -o htmlhelper.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html/page.cpp -o page.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html/pager.cpp -o pager.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html/selection.cpp -o selection.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html/components.cpp -o components.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html/commentdiag.cpp -o commentdiag.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html/indentstream.cpp -o indentstream.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html/html_exception.cpp -o html_exception.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html/writer_htmlenc.cpp -o writer_htmlenc.o /bin/rm -f libxhtml.a .libxhtml.a.stamp ar cr libxhtml.a node.o html.o htmlhelper.o page.o pager.o selection.o components.o commentdiag.o indentstream.o html_exception.o writer_htmlenc.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxhtml.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxhtml.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxhtml.a /bin/ln -f .xhtml.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xhtml.dep gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/html' /usr/pkg/bin/gmake -C test -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/html' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/html/test' /usr/pkg/bin/gmake -C demo -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/html' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/html/demo' gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/html' /usr/pkg/bin/gmake -C build-system -w -j3 --jobserver-auth=8,9 all_r || exit 5 gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build' gmake[2]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -C helpers -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system/helpers' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system/helpers' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system/helpers' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system/helpers' /usr/pkg/bin/gmake[3] (Makefile.run_with_lock.app): Nothing to be done for `all'. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system/helpers' /usr/pkg/bin/gmake -C project_tree_builder -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder TMPL=project_tree_builder -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/prj_file_collector.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/ptb_registry.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/ptb_gui.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/configurable_file.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/msvc_dlls_info.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/proj_projects.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/msvc_configure_prj_generator.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/resolver.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/proj_utils.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/proj_src_resolver.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/proj_tree_builder.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/proj_tree.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/proj_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/proj_builder_app.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/msvc_sln_generator.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/msvc_site.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/msvc_project_context.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_generator.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/msvc_masterproject_generator.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/msvc_makefile.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/msvc_configure.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/file_contents.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/file_contents.cpp -o file_contents.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include 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/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/msvc_project_context.cpp -o msvc_project_context.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/msvc_site.cpp -o msvc_site.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee 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/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp -o proj_datatool_generated_src.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/proj_item.cpp -o proj_item.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee 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-D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.cpp -o msvc_prj_files_collector.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/configurable_file.cpp -o configurable_file.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/ptb_gui.cpp -o ptb_gui.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/ptb_registry.cpp -o ptb_registry.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp -o mac_prj_generator.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/prj_file_collector.cpp -o prj_file_collector.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O file_contents.o msvc_configure.o msvc_makefile.o msvc_masterproject_generator.o msvc_prj_generator.o msvc_prj_utils.o msvc_project_context.o msvc_site.o msvc_sln_generator.o proj_builder_app.o proj_datatool_generated_src.o proj_item.o proj_tree.o proj_tree_builder.o proj_src_resolver.o proj_utils.o resolver.o msvc_configure_prj_generator.o proj_projects.o msvc_dlls_info.o msvc_prj_files_collector.o configurable_file.o ptb_gui.o ptb_registry.o mac_prj_generator.o prj_file_collector.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -lxutil -lxncbi -lxregexp -L/usr/pkg/lib -lpcre -lm -lpthread -o project_tree_builder strip project_tree_builder /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f project_tree_builder /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin /bin/ln -f project_tree_builder /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/project_tree_builder gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' /usr/pkg/bin/gmake -C msbuild -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. NOTE: Skipping project msbuild due to unmet requirements: MSWin gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/msbuild TMPL=msbuild_dataobj -w -j3 --jobserver-auth=16,17 mark-as-disabled gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system' /usr/pkg/bin/gmake -C serial -w -j3 --jobserver-auth=8,9 all_r || exit 5 gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build' gmake[2]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/soap/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT test/Makefile test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/soap/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/soap/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT soap/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial/test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial/soap/Makefile gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial TMPL=serial -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial TMPL=cserial -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial TMPL=serial -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/rpcbase.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/pathhook.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/serialobject.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/serializable.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/objistrjson.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/objostrjson.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/objistrxml.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/objostrxml.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/objistrasnb.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/objostrasnb.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/objistrasn.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/objostrasn.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/objstack.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/objlist.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/objhook.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/exception.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/pack_string.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/delaybuf.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/serial.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/iterator.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/objcopy.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/objostr.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/objistr.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/aliasinfo.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/choiceptr.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/choice.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/variant.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/classinfo.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/member.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/classinfob.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/memberlist.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/memberid.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/stltypes.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/continfo.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/autoptrinfo.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/ptrinfo.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/enumerated.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/stdtypes.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/typemap.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/typeref.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/objectio.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/objectiter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/objectinfo.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/typeinfo.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/hookdatakey.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/hookdata.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/hookdata.cpp -o hookdata.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG 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/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/rpcbase.cpp -o rpcbase.o /bin/rm -f libxser.a .libxser.a.stamp ar cr libxser.a hookdata.o hookdatakey.o typeinfo.o objectinfo.o objectiter.o objectio.o typeref.o typemap.o stdtypes.o enumerated.o ptrinfo.o autoptrinfo.o continfo.o stltypes.o memberid.o memberlist.o item.o classinfob.o member.o classinfo.o variant.o choice.o choiceptr.o aliasinfo.o objistr.o objostr.o objcopy.o iterator.o serial.o delaybuf.o pack_string.o exception.o objhook.o objlist.o objstack.o objostrasn.o objistrasn.o objostrasnb.o objistrasnb.o objostrxml.o objistrxml.o objostrjson.o objistrjson.o serializable.o serialobject.o pathhook.o rpcbase.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxser.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxser.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxser.a /bin/ln -f .xser.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xser.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial TMPL=cserial -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/serialasn.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/asntypes.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/asntypes.cpp -o asntypes.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/serialasn.cpp -o serialasn.o /bin/rm -f libxcser.a .libxcser.a.stamp ar cr libxcser.a asntypes.o serialasn.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcser.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxcser.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxcser.a /bin/ln -f .xcser.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xcser.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' /usr/pkg/bin/gmake -C datatool -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial/datatool' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial/datatool' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial/datatool' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial/datatool' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool TMPL=datatool -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial/datatool' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/traversal_spec_file_parser.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/traversal_node.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/traversal_merger.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/traversal_code_generator.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/traversal_pattern_match_callback.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/jsdparser.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/jsdlexer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/wsdlstr.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/wsdlparser.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/wsdllexer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/xsdparser.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/xsdlexer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/aliasstr.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/rpcgen.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/dtdparser.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/dtdlexer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/dtdaux.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/srcutil.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/comments.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/exceptions.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/lexer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/parser.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/aparser.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/alexer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/fileutil.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/code.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/filecode.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/generate.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/moduleset.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/module.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/mcontainer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/value.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/choiceptrstr.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/choicestr.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/stlstr.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/enumstr.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/classstr.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/stdstr.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/ptrstr.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/typestr.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/choicetype.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/blocktype.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/unitype.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/reftype.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/enumtype.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/statictype.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/namespace.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/type.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/datatool.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/datatool.cpp -o datatool.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/type.cpp -o type.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/namespace.cpp -o namespace.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/statictype.cpp -o statictype.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/enumtype.cpp -o enumtype.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/reftype.cpp -o reftype.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/unitype.cpp -o unitype.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/blocktype.cpp -o blocktype.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/choicetype.cpp -o choicetype.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/typestr.cpp -o typestr.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/ptrstr.cpp -o ptrstr.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/stdstr.cpp -o stdstr.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/classstr.cpp -o classstr.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmpIn file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/stdstr.cpp:34:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/stdstr.hpp: In constructor 'ncbi::CBitStringTypeStrings::CBitStringTypeStrings(const string&, const ncbi::CComments&, ncbi::CTypeStrings*)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/stdstr.hpp:133:27: warning: 'ncbi::CBitStringTypeStrings::m_BitNames' will be initialized after [-Wreorder] AutoPtr m_BitNames; ^~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/stdstr.cpp:201:56: warning: base 'ncbi::CStdTypeStrings' [-Wreorder] : m_BitNames(bitNames), CParent(type,comments,false) ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/stdstr.cpp:199:1: warning: when initialized here [-Wreorder] CBitStringTypeStrings::CBitStringTypeStrings(const string& type, ^~~~~~~~~~~~~~~~~~~~~ /pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/enumstr.cpp -o enumstr.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/stlstr.cpp -o stlstr.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/choicestr.cpp -o choicestr.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/choiceptrstr.cpp -o choiceptrstr.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/value.cpp -o value.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/mcontainer.cpp -o mcontainer.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/module.cpp -o module.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/moduleset.cpp -o moduleset.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/generate.cpp -o generate.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/filecode.cpp -o filecode.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/code.cpp -o code.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/fileutil.cpp -o fileutil.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/alexer.cpp -o alexer.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/aparser.cpp -o aparser.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/parser.cpp -o parser.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/lexer.cpp -o lexer.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/exceptions.cpp -o exceptions.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/comments.cpp -o comments.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/srcutil.cpp -o srcutil.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/dtdaux.cpp -o dtdaux.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/dtdlexer.cpp -o dtdlexer.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/dtdparser.cpp -o dtdparser.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/rpcgen.cpp -o rpcgen.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/aliasstr.cpp -o aliasstr.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/xsdlexer.cpp -o xsdlexer.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/xsdparser.cpp -o xsdparser.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/wsdllexer.cpp -o wsdllexer.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/wsdlparser.cpp -o wsdlparser.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/wsdlstr.cpp -o wsdlstr.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/jsdlexer.cpp -o jsdlexer.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/jsdparser.cpp -o jsdparser.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/traversal_pattern_match_callback.cpp -o traversal_pattern_match_callback.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/traversal_code_generator.cpp -o traversal_code_generator.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/traversal_merger.cpp -o traversal_merger.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/traversal_node.cpp -o traversal_node.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/traversal_spec_file_parser.cpp -o traversal_spec_file_parser.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O datatool.o type.o namespace.o statictype.o enumtype.o reftype.o unitype.o blocktype.o choicetype.o typestr.o ptrstr.o stdstr.o classstr.o enumstr.o stlstr.o choicestr.o choiceptrstr.o value.o mcontainer.o module.o moduleset.o generate.o filecode.o code.o fileutil.o alexer.o aparser.o parser.o lexer.o exceptions.o comments.o srcutil.o dtdaux.o dtdlexer.o dtdparser.o rpcgen.o aliasstr.o xsdlexer.o xsdparser.o wsdllexer.o wsdlparser.o wsdlstr.o jsdlexer.o jsdparser.o traversal_pattern_match_callback.o traversal_code_generator.o traversal_merger.o traversal_node.o traversal_spec_file_parser.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -lxser -lxutil -lxncbi -lm -lpthread -o datatool strip datatool /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f datatool /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin /bin/ln -f datatool /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial/datatool' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial/datatool' /usr/pkg/bin/gmake -C test -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial/test' /usr/pkg/bin/gmake -C soap -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial/soap' gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' /usr/pkg/bin/gmake -C db -w -j3 --jobserver-auth=8,9 all_r || exit 5 gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build' gmake[2]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/db/bdb/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/db/bdb/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/db/bdb/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT bdb/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/db/bdb/Makefile /usr/pkg/bin/gmake -C sqlite -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/db' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/db/sqlite' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/db/sqlite TMPL=sqlitewrapp -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/db/sqlite' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/db/sqlite TMPL=sqlitewrapp -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/db/sqlite' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/db/sqlite/sqlitewrapp.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/db/sqlite/sqlitewrapp.cpp -o sqlitewrapp.o /bin/rm -f libsqlitewrapp.a .libsqlitewrapp.a.stamp ar cr libsqlitewrapp.a sqlitewrapp.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsqlitewrapp.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libsqlitewrapp.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libsqlitewrapp.a /bin/ln -f .sqlitewrapp.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.sqlitewrapp.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/db/sqlite' /usr/pkg/bin/gmake -C bdb -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/db' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/db/bdb' gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/db' /usr/pkg/bin/gmake -C dbapi -w -j3 --jobserver-auth=8,9 all_r || exit 5 gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build' gmake[2]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/simple/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/lang_bind/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/simple/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/simple/Makefile.in test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/lang_bind/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/lang_bind/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT simple/Makefile test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT lang_bind/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/simple/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/lang_bind/Makefile gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi TMPL=dbapi -w -j3 --jobserver-auth=10,11 export-headers gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Nothing to be done for 'export-headers'. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi TMPL=dbapi -w -j3 --jobserver-auth=10,11 all gmake[3]: warning: -jN forced in submake: disabling jobserver mode. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/dbapi.cpp: In member function 'virtual ncbi::CNcbiOstream& ncbi::IResultSet::GetBlobOStream(size_t, ncbi::EAllowLog, size_t)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/dbapi.cpp:118:35: warning: 'virtual ncbi::CNcbiOstream& ncbi::IResultSet::GetBlobOStream(size_t, ncbi::TBlobOStreamFlags, size_t)' is deprecated [-Wdeprecated-declarations] buf_size); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/dbapi.cpp:35:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/dbapi.hpp:269:27: note: declared here virtual CNcbiOstream& GetBlobOStream(size_t blob_size, ^~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/dbapi.cpp: In member function 'virtual ncbi::CNcbiOstream& ncbi::IResultSet::GetBlobOStream(ncbi::IConnection*, size_t, ncbi::EAllowLog, size_t)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/dbapi.cpp:126:35: warning: 'virtual ncbi::CNcbiOstream& ncbi::IResultSet::GetBlobOStream(ncbi::IConnection*, size_t, ncbi::TBlobOStreamFlags, size_t)' is deprecated [-Wdeprecated-declarations] buf_size); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/dbapi.cpp:35:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/dbapi.hpp:294:27: note: declared here virtual CNcbiOstream& GetBlobOStream(IConnection *conn, ^~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/dbapi.cpp: In member function 'virtual ncbi::CNcbiOstream& ncbi::ICursor::GetBlobOStream(unsigned int, size_t, ncbi::EAllowLog, size_t)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/dbapi.cpp:156:35: warning: 'virtual ncbi::CNcbiOstream& ncbi::ICursor::GetBlobOStream(unsigned int, size_t, ncbi::TBlobOStreamFlags, size_t)' is deprecated [-Wdeprecated-declarations] buf_size); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/dbapi.cpp:35:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/dbapi.hpp:596:27: note: declared here virtual CNcbiOstream& GetBlobOStream(unsigned int col, ^~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/dbapi.cpp: In member function 'virtual ncbi::IWriter* ncbi::ICursor::GetBlobWriter(unsigned int, size_t, ncbi::EAllowLog)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/dbapi.cpp:163:72: warning: 'virtual ncbi::IWriter* ncbi::ICursor::GetBlobWriter(unsigned int, size_t, ncbi::TBlobOStreamFlags)' is deprecated [-Wdeprecated-declarations] (log_it == eDisableLog) ? fBOS_SkipLogging : 0); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/dbapi.cpp:35:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/dbapi.hpp:621:22: note: declared here virtual IWriter* GetBlobWriter(unsigned int col, ^~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rs_impl.cpp: In member function 'void ncbi::CResultSet::x_CacheItems(int)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rs_impl.cpp:261:59: warning: 'virtual ncbi::I_BlobDescriptor* ncbi::CDB_Result::GetBlobDescriptor()' is deprecated [-Wdeprecated-declarations] var.SetBlobDescriptor(m_rs->GetBlobDescriptor()); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/driver/driver_mgr.hpp:36:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/driver_mgr.hpp:38, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/dbapi.hpp:40, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/stmt_impl.hpp:38, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rs_impl.cpp:37: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/driver/public.hpp:541:31: note: declared here virtual I_BlobDescriptor* GetBlobDescriptor(); ^~~~~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rs_impl.cpp: In member function 'virtual ncbi::CNcbiOstream& ncbi::CResultSet::GetBlobOStream(size_t, ncbi::EAllowLog, size_t)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rs_impl.cpp:329:66: warning: 'virtual ncbi::CNcbiOstream& ncbi::IResultSet::GetBlobOStream(size_t, ncbi::EAllowLog, size_t)' is deprecated [-Wdeprecated-declarations] return IResultSet::GetBlobOStream(blob_size, log_it, buf_size); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/stmt_impl.hpp:38:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rs_impl.cpp:37: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/dbapi.hpp:274:27: note: declared here virtual CNcbiOstream& GetBlobOStream(size_t blob_size, ^~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rs_impl.cpp: At global scope: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rs_impl.cpp:330:1: warning: 'virtual ncbi::CNcbiOstream& ncbi::CResultSet::GetBlobOStream(size_t, ncbi::EAllowLog, size_t)' is deprecated [-Wdeprecated-declarations] } ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rs_impl.cpp:325:15: note: declared here CNcbiOstream& CResultSet::GetBlobOStream(size_t blob_size, ^~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rs_impl.cpp: In member function 'virtual ncbi::CNcbiOstream& ncbi::CResultSet::GetBlobOStream(ncbi::IConnection*, size_t, ncbi::EAllowLog, size_t)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rs_impl.cpp:337:72: warning: 'virtual ncbi::CNcbiOstream& ncbi::IResultSet::GetBlobOStream(ncbi::IConnection*, size_t, ncbi::EAllowLog, size_t)' is deprecated [-Wdeprecated-declarations] return IResultSet::GetBlobOStream(conn, blob_size, log_it, buf_size); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/stmt_impl.hpp:38:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rs_impl.cpp:37: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/dbapi.hpp:300:27: note: declared here virtual CNcbiOstream& GetBlobOStream(IConnection *conn, ^~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rs_impl.cpp: At global scope: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rs_impl.cpp:338:1: warning: 'virtual ncbi::CNcbiOstream& ncbi::CResultSet::GetBlobOStream(ncbi::IConnection*, size_t, ncbi::EAllowLog, size_t)' is deprecated [-Wdeprecated-declarations] } ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rs_impl.cpp:332:15: note: declared here CNcbiOstream& CResultSet::GetBlobOStream(IConnection *conn, ^~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rs_impl.cpp:355:1: warning: 'virtual ncbi::CNcbiOstream& ncbi::CResultSet::GetBlobOStream(size_t, ncbi::TBlobOStreamFlags, size_t)' is deprecated [-Wdeprecated-declarations] } ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rs_impl.cpp:348:15: note: declared here CNcbiOstream& CResultSet::GetBlobOStream(size_t blob_size, ^~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rs_impl.cpp:365:1: warning: 'virtual ncbi::CNcbiOstream& ncbi::CResultSet::GetBlobOStream(ncbi::IConnection*, size_t, ncbi::TBlobOStreamFlags, size_t)' is deprecated [-Wdeprecated-declarations] } ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rs_impl.cpp:357:15: note: declared here CNcbiOstream& CResultSet::GetBlobOStream(IConnection *conn, ^~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rs_impl.cpp: In member function 'ncbi::CNcbiOstream& ncbi::CResultSet::xGetBlobOStream(ncbi::CDB_Connection*, size_t, ncbi::TBlobOStreamFlags, size_t, bool)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rs_impl.cpp:384:63: warning: 'virtual ncbi::I_BlobDescriptor* ncbi::CDB_Result::GetBlobDescriptor()' is deprecated [-Wdeprecated-declarations] unique_ptr desc(m_rs->GetBlobDescriptor()); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/driver/driver_mgr.hpp:36:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/driver_mgr.hpp:38, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/dbapi.hpp:40, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/stmt_impl.hpp:38, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rs_impl.cpp:37: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/driver/public.hpp:541:31: note: declared here virtual I_BlobDescriptor* GetBlobDescriptor(); ^~~~~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/blobstream.cpp: In constructor 'ncbi::CBlobOStream::CBlobOStream(ncbi::CDB_CursorCmd*, unsigned int, size_t, std::streamsize, ncbi::TBlobOStreamFlags, ncbi::CDB_Connection*)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/blobstream.cpp:86:69: warning: 'virtual ncbi::CDB_SendDataCmd* ncbi::CDB_CursorCmd::SendDataCmd(unsigned int, size_t, bool, bool)' is deprecated [-Wdeprecated-declarations] (flags & fBOS_SkipLogging) == 0)); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/driver/driver_mgr.hpp:36:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/driver_mgr.hpp:38, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/dbapi.hpp:40, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/bytestreambuf.hpp:36, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/blobstream.hpp:36, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/blobstream.cpp:34: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/driver/public.hpp:890:30: note: declared here virtual CDB_SendDataCmd* SendDataCmd(unsigned int item_num, size_t size, ^~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cursor_impl.cpp:122:1: warning: 'virtual ncbi::CNcbiOstream& ncbi::CCursor::GetBlobOStream(unsigned int, size_t, ncbi::TBlobOStreamFlags, size_t)' is deprecated [-Wdeprecated-declarations] } ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cursor_impl.cpp:106:15: note: declared here CNcbiOstream& CCursor::GetBlobOStream(unsigned int col, ^~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cursor_impl.cpp: In member function 'virtual ncbi::CNcbiOstream& ncbi::CCursor::GetBlobOStream(unsigned int, size_t, ncbi::EAllowLog, size_t)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cursor_impl.cpp:129:68: warning: 'virtual ncbi::CNcbiOstream& ncbi::ICursor::GetBlobOStream(unsigned int, size_t, ncbi::EAllowLog, size_t)' is deprecated [-Wdeprecated-declarations] return ICursor::GetBlobOStream(col, blob_size, log_it, buf_size); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/conn_impl.hpp:38:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cursor_impl.cpp:35: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/dbapi.hpp:602:27: note: declared here virtual CNcbiOstream& GetBlobOStream(unsigned int col, ^~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cursor_impl.cpp: At global scope: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cursor_impl.cpp:130:1: warning: 'virtual ncbi::CNcbiOstream& ncbi::CCursor::GetBlobOStream(unsigned int, size_t, ncbi::EAllowLog, size_t)' is deprecated [-Wdeprecated-declarations] } ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cursor_impl.cpp:124:15: note: declared here CNcbiOstream& CCursor::GetBlobOStream(unsigned int col, ^~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cursor_impl.cpp:145:1: warning: 'virtual ncbi::IWriter* ncbi::CCursor::GetBlobWriter(unsigned int, size_t, ncbi::TBlobOStreamFlags)' is deprecated [-Wdeprecated-declarations] } ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cursor_impl.cpp:132:10: note: declared here IWriter* CCursor::GetBlobWriter(unsigned int col, ^~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cursor_impl.cpp: In member function 'virtual ncbi::IWriter* ncbi::CCursor::GetBlobWriter(unsigned int, size_t, ncbi::EAllowLog)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cursor_impl.cpp:151:57: warning: 'virtual ncbi::IWriter* ncbi::ICursor::GetBlobWriter(unsigned int, size_t, ncbi::EAllowLog)' is deprecated [-Wdeprecated-declarations] return ICursor::GetBlobWriter(col, blob_size, log_it); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/conn_impl.hpp:38:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cursor_impl.cpp:35: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/dbapi.hpp:626:22: note: declared here virtual IWriter* GetBlobWriter(unsigned int col, ^~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cursor_impl.cpp: At global scope: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cursor_impl.cpp:152:1: warning: 'virtual ncbi::IWriter* ncbi::CCursor::GetBlobWriter(unsigned int, size_t, ncbi::EAllowLog)' is deprecated [-Wdeprecated-declarations] } ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cursor_impl.cpp:147:10: note: declared here IWriter* CCursor::GetBlobWriter(unsigned int col, ^~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rw_impl.cpp: In constructor 'ncbi::CxBlobWriter::CxBlobWriter(ncbi::CDB_CursorCmd*, unsigned int, size_t, ncbi::TBlobOStreamFlags)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rw_impl.cpp:89:68: warning: 'virtual ncbi::CDB_SendDataCmd* ncbi::CDB_CursorCmd::SendDataCmd(unsigned int, size_t, bool, bool)' is deprecated [-Wdeprecated-declarations] (flags & fBOS_SkipLogging) == 0); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/driver/driver_mgr.hpp:36:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/driver_mgr.hpp:38, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/dbapi.hpp:40, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rw_impl.hpp:38, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rw_impl.cpp:35: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/driver/public.hpp:890:30: note: declared here virtual CDB_SendDataCmd* SendDataCmd(unsigned int item_num, size_t size, ^~~~~~~~~~~ gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rw_impl.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/bulkinsert.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cursor_impl.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/blobstream.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/bytestreambuf.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cstmt_impl.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rsmeta_impl.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rs_impl.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/stmt_impl.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/conn_impl.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/ds_impl.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/err_handler.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver_mgr.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/dbapi.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/active_obj.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/variant.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/variant.cpp -o variant.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/active_obj.cpp -o active_obj.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/dbapi.cpp -o dbapi.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver_mgr.cpp -o driver_mgr.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/err_handler.cpp -o err_handler.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/ds_impl.cpp -o ds_impl.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/conn_impl.cpp -o conn_impl.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/stmt_impl.cpp -o stmt_impl.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rs_impl.cpp -o rs_impl.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rsmeta_impl.cpp -o rsmeta_impl.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cstmt_impl.cpp -o cstmt_impl.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/bytestreambuf.cpp -o bytestreambuf.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/blobstream.cpp -o blobstream.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cursor_impl.cpp -o cursor_impl.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/bulkinsert.cpp -o bulkinsert.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rw_impl.cpp -o rw_impl.o /bin/rm -f libdbapi.a .libdbapi.a.stamp ar cr libdbapi.a variant.o active_obj.o dbapi.o driver_mgr.o err_handler.o ds_impl.o conn_impl.o stmt_impl.o rs_impl.o rsmeta_impl.o cstmt_impl.o bytestreambuf.o blobstream.o cursor_impl.o bulkinsert.o rw_impl.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libdbapi.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libdbapi.a /bin/ln -f .dbapi.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.dbapi.dep gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi' /usr/pkg/bin/gmake -C driver -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/util/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/ctlib/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/ftds64/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/util/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/util/Makefile.in test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/ctlib/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/ctlib/Makefile.in /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/ftds95/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/ftds64/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/ftds64/Makefile.in /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/ftds100/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/ftds-default/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/ftds95/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/ftds95/Makefile.in /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/mysql/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/ftds-default/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/ftds-default/Makefile.in test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/ftds100/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/ftds100/Makefile.in /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/samples/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/mysql/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/mysql/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT util/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT ctlib/Makefile test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/samples/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/samples/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT ftds64/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds64/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/util/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/ctlib/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT ftds95/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT ftds100/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT ftds-default/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds95/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds100/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT mysql/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT samples/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds-default/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/mysql/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/samples/Makefile gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver TMPL=dbapi_driver -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver TMPL=dbapi_driver -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/interfaces.cpp: In member function 'bool ncbi::I_CursorCmd::UpdateTextImage(unsigned int, ncbi::CDB_Stream&, bool)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/interfaces.cpp:248:45: warning: 'virtual bool ncbi::I_CursorCmd::UpdateBlob(unsigned int, ncbi::CDB_Stream&, bool)' is deprecated [-Wdeprecated-declarations] return UpdateBlob(item_num, data, log_it); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/driver/dbapi_driver_conn_mgr.hpp:38:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/driver/dbapi_driver_conn_params.hpp:36, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/interfaces.cpp:34: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/driver/interfaces.hpp:561:18: note: declared here virtual bool UpdateBlob(unsigned int item_num, CDB_Stream& data, ^~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/interfaces.cpp: In member function 'ncbi::I_BlobDescriptor* ncbi::I_Result::GetImageOrTextDescriptor()': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/interfaces.cpp:276:30: warning: 'virtual ncbi::I_BlobDescriptor* ncbi::I_Result::GetBlobDescriptor()' is deprecated [-Wdeprecated-declarations] return GetBlobDescriptor(); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/driver/dbapi_driver_conn_mgr.hpp:38:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/driver/dbapi_driver_conn_params.hpp:36, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/interfaces.cpp:34: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/driver/interfaces.hpp:769:31: note: declared here virtual I_BlobDescriptor* GetBlobDescriptor(void) = 0; ^~~~~~~~~~~~~~~~~ gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_pool_balancer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_object_convert.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_driver_exception_storage.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_driver_conn_params.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_impl_result.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_impl_context.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_impl_connection.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_impl_cmd.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_driver_utils.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_svc_mapper.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_conn_factory.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_driver_conn_mgr.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/driver_mgr.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/pointer_pot.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/memory_store.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/types.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/public.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/interfaces.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/exception.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/parameters.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/numeric_convert.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/handle_stack.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/handle_stack.cpp -o handle_stack.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include 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dbapi_driver_exception_storage.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_object_convert.cpp -o dbapi_object_convert.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp -o dbapi_driver_convert.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_pool_balancer.cpp -o dbapi_pool_balancer.o /bin/rm -f libdbapi_driver.a .libdbapi_driver.a.stamp /bin/rm -f libdbapi_driver-dll.so .libdbapi_driver-dll.so.stamp ar cr libdbapi_driver.a handle_stack.o numeric_convert.o parameters.o exception.o interfaces.o public.o types.o memory_store.o pointer_pot.o driver_mgr.o dbapi_driver_conn_mgr.o dbapi_conn_factory.o dbapi_svc_mapper.o dbapi_driver_utils.o dbapi_impl_cmd.o dbapi_impl_connection.o dbapi_impl_context.o dbapi_impl_result.o dbapi_driver_conn_params.o dbapi_driver_exception_storage.o dbapi_object_convert.o dbapi_driver_convert.o dbapi_pool_balancer.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -shared -o libdbapi_driver-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O -fPIC handle_stack.o numeric_convert.o parameters.o exception.o interfaces.o public.o types.o memory_store.o pointer_pot.o driver_mgr.o dbapi_driver_conn_mgr.o dbapi_conn_factory.o dbapi_svc_mapper.o dbapi_driver_utils.o dbapi_impl_cmd.o dbapi_impl_connection.o dbapi_impl_context.o dbapi_impl_result.o dbapi_driver_conn_params.o dbapi_driver_exception_storage.o dbapi_object_convert.o dbapi_driver_convert.o dbapi_pool_balancer.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -lm -lpthread /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi_driver.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libdbapi_driver.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libdbapi_driver.a /bin/ln -f .dbapi_driver.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.dbapi_driver.dep /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi_driver-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libdbapi_driver-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libdbapi_driver-dll.so /bin/ln -f .dbapi_driver-dll.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.dbapi_driver-dll.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver' /usr/pkg/bin/gmake -C util -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/util' /usr/pkg/bin/gmake -C ctlib -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/ctlib' /usr/pkg/bin/gmake -C ftds64 -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds64' /usr/pkg/bin/gmake -C ftds95 -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds95' /usr/pkg/bin/gmake -C ftds100 -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds100' /usr/pkg/bin/gmake -C ftds-default -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds-default' /usr/pkg/bin/gmake -C mysql -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/mysql' /usr/pkg/bin/gmake -C odbc -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. NOTE: Skipping project odbc due to unmet requirements: ODBC gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/odbc TMPL=ncbi_xdbapi_odbc -w -j3 --jobserver-auth=16,17 mark-as-disabled gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /bin/echo 'Warning: non-existent sub-project "samples"' Warning: non-existent sub-project "samples" gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /usr/pkg/bin/gmake -C samples -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/samples' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver' /usr/pkg/bin/gmake -C simple -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/simple' /usr/pkg/bin/gmake -C cache -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cache/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cache/admintool/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cache/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cache/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT test/Makefile test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cache/admintool/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cache/admintool/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT admintool/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/cache/test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/cache/admintool/Makefile gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/cache' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/cache' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/cache' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/cache' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cache TMPL=ncbi_xcache_dbapi -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/cache' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/cache' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/cache' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/cache' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/cache' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/cache' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cache TMPL=ncbi_xcache_dbapi -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cache/dbapi_blob_cache.cpp: In member function 'ncbi::ERW_Result ncbi::CDBAPI_CacheIWriter::x_SaveBlob(ncbi::ICursor&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cache/dbapi_blob_cache.cpp:436:65: warning: 'virtual ncbi::CNcbiOstream& ncbi::ICursor::GetBlobOStream(unsigned int, size_t, ncbi::TBlobOStreamFlags, size_t)' is deprecated [-Wdeprecated-declarations] ostream& out = cur.GetBlobOStream(1, m_BytesInBuffer); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/cache/dbapi_blob_cache.hpp:40:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cache/dbapi_blob_cache.cpp:33: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/dbapi.hpp:596:27: note: declared here virtual CNcbiOstream& GetBlobOStream(unsigned int col, ^~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cache/dbapi_blob_cache.cpp:441:69: warning: 'virtual ncbi::CNcbiOstream& ncbi::ICursor::GetBlobOStream(unsigned int, size_t, ncbi::TBlobOStreamFlags, size_t)' is deprecated [-Wdeprecated-declarations] ostream& out = cur.GetBlobOStream(1, (size_t)total_bytes); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/cache/dbapi_blob_cache.hpp:40:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cache/dbapi_blob_cache.cpp:33: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/dbapi.hpp:596:27: note: declared here virtual CNcbiOstream& GetBlobOStream(unsigned int col, ^~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cache/dbapi_blob_cache.cpp: In member function 'bool ncbi::CDBAPI_Cache::x_UpdateBlob(ncbi::IStatement&, const string&, int, const string&, const void*, size_t)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cache/dbapi_blob_cache.cpp:1246:51: warning: 'virtual ncbi::CNcbiOstream& ncbi::ICursor::GetBlobOStream(unsigned int, size_t, ncbi::TBlobOStreamFlags, size_t)' is deprecated [-Wdeprecated-declarations] ostream& out = cur->GetBlobOStream(1, size); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/cache/dbapi_blob_cache.hpp:40:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cache/dbapi_blob_cache.cpp:33: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/dbapi.hpp:596:27: note: declared here virtual CNcbiOstream& GetBlobOStream(unsigned int col, ^~~~~~~~~~~~~~ gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/cache' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cache/dbapi_blob_cache_cf.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cache/dbapi_blob_cache.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cache/dbapi_blob_cache.cpp -o dbapi_blob_cache.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cache/dbapi_blob_cache_cf.cpp -o dbapi_blob_cache_cf.o /bin/rm -f libncbi_xcache_dbapi.a .libncbi_xcache_dbapi.a.stamp /bin/rm -f libncbi_xcache_dbapi-dll.so .libncbi_xcache_dbapi-dll.so.stamp ar cr libncbi_xcache_dbapi.a dbapi_blob_cache.o dbapi_blob_cache_cf.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -shared -o libncbi_xcache_dbapi-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O -fPIC dbapi_blob_cache.o dbapi_blob_cache_cf.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -ldbapi -ldbapi_driver-dll -lm -lpthread /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_dbapi.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xcache_dbapi.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libncbi_xcache_dbapi.a /bin/ln -f .ncbi_xcache_dbapi.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.ncbi_xcache_dbapi.dep /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_dbapi-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xcache_dbapi-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libncbi_xcache_dbapi-dll.so /bin/ln -f .ncbi_xcache_dbapi-dll.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.ncbi_xcache_dbapi-dll.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/cache' /usr/pkg/bin/gmake -C test -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/cache' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/cache/test' /usr/pkg/bin/gmake -C admintool -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/cache' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/cache/admintool' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/cache' /usr/pkg/bin/gmake -C lang_bind -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/lang_bind' /usr/pkg/bin/gmake -C test -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/test' gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi' /usr/pkg/bin/gmake -C objects -w -j3 --jobserver-auth=8,9 all_r || exit 5 gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build' gmake[2]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/Makefile.sources builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects || exit 2; \ for i in omssa access biblio blast blastdb blastxml blastxml2 cdd cn3d docsum biotree entrez2 entrezgene featdef gbseq general id1 id2 insdseq macro medlars medline mim mla mmdb1 mmdb2 mmdb3 ncbimime objprt proj pub pubmed scoremat seq seqalign seqblock seqcode seqfeat seqloc seqsplit seqres seqset submit taxon1 taxon3 tinyseq pcsubstance pcassay remap homologene seqedit seqtable seqtest trackmgr gbproj valerr valid genesbyloc; do \ if test -f "$i/$i.asn"; then \ MAKE="/usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17"; export MAKE; \ ( cd $i && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh $i all; ) \ || case "-w -j3 --jobserver-auth=15,17" in *k*) ;; *) exit 2 ;; esac; \ else \ echo "Warning: $i/$i.asn not found (skipping)"; \ fi; \ done /usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=omssa MODULE_PATH=objects/omssa MODULE_ASN=omssa.asn MODULE_IMPORT='objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/omssa' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m omssa.asn -M "objects/seq/seq.asn" -oA \ -oc omssa -or objects/omssa -odi -od omssa.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd omssa.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/omssa' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=access MODULE_PATH=objects/access MODULE_ASN=access.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/access' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m access.asn -M "" -oA \ -oc access -or objects/access -odi -od access.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd access.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/access' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m biblio.asn -M "objects/general/general.asn" -oA \ -oc biblio -or objects/biblio -odi -od biblio.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd biblio.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat/scoremat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blast' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m blast.asn -M "objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn" -oA \ -oc blast -or objects/blast -odi -od blast.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blast.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blast' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastdb' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m blastdb.asn -M "objects/seqloc/seqloc.asn" -oA \ -oc blastdb -or objects/blastdb -odi -od blastdb.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blastdb.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastdb' File blastxml.module not found. Using defaults... /usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m blastxml.asn -M "" -oA \ -oc blastxml -or objects/blastxml -odi -od blastxml.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blastxml.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml' File blastxml2.module not found. Using defaults... /usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml2' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m blastxml2.asn -M "" -oA \ -oc blastxml2 -or objects/blastxml2 -odi -od blastxml2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blastxml2.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml2' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=cdd MODULE_PATH=objects/cdd MODULE_ASN=cdd.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seqalign/seqalign objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/scoremat/scoremat' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb1/mmdb1.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb2/mmdb2.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb3/mmdb3.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d/cn3d.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat/scoremat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cdd' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m cdd.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn" -oA \ -oc cdd -or objects/cdd -odi -od cdd.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd cdd.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cdd' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=cn3d MODULE_PATH=objects/cn3d MODULE_ASN=cn3d.asn MODULE_IMPORT='objects/mmdb1/mmdb1' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb1/mmdb1.asn' IMPFILES='objects/mmdb1/mmdb1.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. .8.1+-src/c++/src -m cn3d.asn -M "objects/mmdb1/mmdb1.asn" -oA \ -oc cn3d -or objects/cn3d -odi -od cn3d.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd cn3d.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=docsum MODULE_PATH=objects/docsum MODULE_ASN=docsum.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/docsum' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m docsum.asn -M "" -oA \ -oc docsum -or objects/docsum -odi -od docsum.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd docsum.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/docsum' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=biotree MODULE_PATH=objects/biotree MODULE_ASN=biotree.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biotree' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m biotree.asn -M "objects/general/general.asn" -oA \ -oc biotree -or objects/biotree -odi -od biotree.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd biotree.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biotree' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m entrez2.asn -M "" -oA \ -oc entrez2 -or objects/entrez2 -odi -od entrez2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd entrez2.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=entrezgene MODULE_PATH=objects/entrezgene MODULE_ASN=entrezgene.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrezgene' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m entrezgene.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn" -oA \ -oc entrezgene -or objects/entrezgene -odi -od entrezgene.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd entrezgene.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrezgene' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=featdef MODULE_PATH=objects/featdef MODULE_ASN=featdef.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/featdef' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m featdef.asn -M "" -oA \ -oc featdef -or objects/featdef -odi -od featdef.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd featdef.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/featdef' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbseq' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m gbseq.asn -M "" -oA \ -oc gbseq -or objects/gbseq -odi -od gbseq.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd gbseq.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbseq' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m general.asn -M "" -oA \ -oc general -or objects/general -odi -od general.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd general.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id1' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m id1.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn" -oA \ -oc id1 -or objects/id1 -odi -od id1.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd id1.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id1' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqsplit/seqsplit.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id2' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m id2.asn -M "objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn" -oA \ -oc id2 -or objects/id2 -odi -od id2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd id2.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id2' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=insdseq MODULE_PATH=objects/insdseq MODULE_ASN=insdseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/insdseq' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m insdseq.asn -M "" -oA \ -oc insdseq -or objects/insdseq -odi -od insdseq.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd insdseq.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/insdseq' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m macro.asn -M "" -oA \ -oc macro -or objects/macro -odi -od macro.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd macro.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-bla[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. st+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medlars' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m medlars.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA \ -oc medlars -or objects/medlars -odi -od medlars.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd medlars.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medlars' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m medline.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA \ -oc medline -or objects/medline -odi -od medline.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd medline.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=mim MODULE_PATH=objects/mim MODULE_ASN=mim.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mim' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m mim.asn -M "" -oA \ -oc mim -or objects/mim -odi -od mim.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mim.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mim' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medlars/medlars.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed/pubmed.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mla' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m mla.asn -M "objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn" -oA \ -oc mla -or objects/mla -odi -od mla.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mla.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mla' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb1 MODULE_PATH=objects/mmdb1 MODULE_ASN=mmdb1.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb2/mmdb2 objects/mmdb3/mmdb3' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb2/mmdb2.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb1' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m mmdb1.asn -M "objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn" -oA \ -oc mmdb1 -or objects/mmdb1 -odi -od mmdb1.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mmdb1.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb1' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb2 MODULE_PATH=objects/mmdb2 MODULE_ASN=mmdb2.asn MODULE_IMPORT='objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb3/mmdb3' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb1/mmdb1.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb2' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m mmdb2.asn -M "objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn" -oA \ -oc mmdb2 -or objects/mmdb2 -odi -od mmdb2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mmdb2.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb2' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb3 MODULE_PATH=objects/mmdb3 MODULE_ASN=mmdb3.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb2/mmdb2' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb1/mmdb1.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb2/mmdb2.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb3' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m mmdb3.asn -M "objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn" -oA \ -oc mmdb3 -or objects/mmdb3 -odi -od mmdb3.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mmdb3.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb3' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=ncbimime MODULE_PATH=objects/ncbimime MODULE_ASN=ncbimime.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/cdd/cdd' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb1/mmdb1.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb2/mmdb2.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb3/mmdb3.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d/cn3d.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cdd/cdd.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/ncbimime' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m ncbimime.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn" -oA \ -oc ncbimime -or objects/ncbimime -odi -od ncbimime.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd ncbimime.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me /objects/ncbimime' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=objprt MODULE_PATH=objects/objprt MODULE_ASN=objprt.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/objprt' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m objprt.asn -M "" -oA \ -oc objprt -or objects/objprt -odi -od objprt.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd objprt.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/objprt' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=proj MODULE_PATH=objects/proj MODULE_ASN=proj.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pubmed/pubmed objects/seqloc/seqloc objects/seq/seq objects/seqset/seqset' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed/pubmed.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/proj' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m proj.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn" -oA \ -oc proj -or objects/proj -odi -od proj.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd proj.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/proj' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m pub.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA \ -oc pub -or objects/pub -odi -od pub.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pub.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m pubmed.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA \ -oc pubmed -or objects/pubmed -odi -od pubmed.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pubmed.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m scoremat.asn -M "objects/seqset/seqset.asn objects/general/general.asn" -oA \ -oc scoremat -or objects/scoremat -odi -od scoremat.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd scoremat.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqblock/seqblock.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqres/seqres.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m seq.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn" -oA \ -oc seq -or objects/seq -odi -od seq.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seq.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m seqalign.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ -oc seqalign -or objects/seqalign -odi -od seqalign.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqalign.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqblock' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m seqblock.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ -oc seqblock -or objects/seqblock -odi -od seqblock.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqblock.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqblock' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. ' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqcode' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m seqcode.asn -M "" -oA \ -oc seqcode -or objects/seqcode -odi -od seqcode.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqcode.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqcode' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m seqfeat.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn" -oA \ -oc seqfeat -or objects/seqfeat -odi -od seqfeat.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqfeat.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m seqloc.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn" -oA \ -oc seqloc -or objects/seqloc -odi -od seqloc.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqloc.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqsplit' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m seqsplit.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn" -oA \ -oc seqsplit -or objects/seqsplit -odi -od seqsplit.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqsplit.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqsplit' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqres' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m seqres.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ -oc seqres -or objects/seqres -odi -od seqres.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqres.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqres' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m seqset.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn" -oA \ -oc seqset -or objects/seqset -odi -od seqset.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqset.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/submit' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m submit.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn" -oA \ -oc submit -or objects/submit -odi -od submit.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd submit.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/submit' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m taxon1.asn -M "objects/seqfeat/seqfeat.asn" -oA \ -oc taxon1 -or objects/taxon1 -odi -od taxon1.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd taxon1.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon3' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m taxon3.asn -M "objects/seqfeat/seqfeat.asn" -oA \ -oc taxon3 -or [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. objects/taxon3 -odi -od taxon3.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd taxon3.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon3' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=tinyseq MODULE_PATH=objects/tinyseq MODULE_ASN=tinyseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/tinyseq' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m tinyseq.asn -M "" -oA \ -oc tinyseq -or objects/tinyseq -odi -od tinyseq.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd tinyseq.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/tinyseq' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=pcsubstance MODULE_PATH=objects/pcsubstance MODULE_ASN=pcsubstance.asn MODULE_IMPORT='objects/general/general objects/pub/pub' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcsubstance' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m pcsubstance.asn -M "objects/general/general.asn objects/pub/pub.asn" -oA \ -oc pcsubstance -or objects/pcsubstance -odi -od pcsubstance.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pcsubstance.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcsubstance' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=pcassay MODULE_PATH=objects/pcassay MODULE_ASN=pcassay.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcassay' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m pcassay.asn -M "objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn" -oA \ -oc pcassay -or objects/pcassay -odi -od pcassay.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pcassay.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcassay' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=remap MODULE_PATH=objects/remap MODULE_ASN=remap.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/remap' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m remap.asn -M "objects/seqloc/seqloc.asn" -oA \ -oc remap -or objects/remap -odi -od remap.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd remap.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/remap' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=homologene MODULE_PATH=objects/homologene MODULE_ASN=homologene.asn MODULE_IMPORT='objects/general/general objects/seqalign/seqalign objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/homologene' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m homologene.asn -M "objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn" -oA \ -oc homologene -or objects/homologene -odi -od homologene.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd homologene.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/homologene' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqedit' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m seqedit.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn" -oA \ -oc seqedit -or objects/seqedit -odi -od seqedit.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqedit.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqedit' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqtable' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m seqtable.asn -M "objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn" -oA \ -oc seqtable -or objects/seqtable -odi -od seqtable.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqtable.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqtable' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqtest MODULE_PATH=objects/seqtest MODULE_ASN=seqtest.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqtest' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m seqtest.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA \ -oc seqtest -or objects/seqtest -odi -od seqtest.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqtest.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqtest' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=trackmgr MODULE_PATH=objects/trackmgr MODULE_ASN=trackmgr.asn MODULE_IMPORT='objects/seqloc/seqloc objects/general/general' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqloc/seqloc.asn objects/general/general.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/Warning: (810.1) No service name provided for CTrackMgrClient [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m trackmgr.asn -M "objects/seqloc/seqloc.asn objects/general/general.asn" -oA \ -oc trackmgr -or objects/trackmgr -odi -od trackmgr.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd trackmgr.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=gbproj MODULE_PATH=objects/gbproj MODULE_ASN=gbproj.asn MODULE_IMPORT='objects/seq/seq objects/seqloc/seqloc objects/seqset/seqset objects/general/general objects/submit/submit objects/seqalign/seqalign' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/submit/submit.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m gbproj.asn -M "objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn" -oA \ -oc gbproj -or objects/gbproj -odi -od gbproj.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd gbproj.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valerr' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m valerr.asn -M "" -oA \ -oc valerr -or objects/valerr -odi -od valerr.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd valerr.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valerr' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valid' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m valid.asn -M "" -oA \ -oc valid -or objects/valid -odi -od valid.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd valid.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valid' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=15,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=genesbyloc MODULE_PATH=objects/genesbyloc MODULE_ASN=genesbyloc.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genesbyloc' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m genesbyloc.asn -M "" -oA \ -oc genesbyloc -or objects/genesbyloc -odi -od genesbyloc.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd genesbyloc.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genesbyloc' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' /usr/pkg/bin/gmake -C general -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/unit_test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT test/Makefile test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/unit_test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/unit_test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/general/test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/general/unit_test/Makefile cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh general all Platform not defined for NetBSD alpha -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/general' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/general' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/general' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general TMPL=general -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/general' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/general' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/general' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general TMPL=general -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/general' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/uoconv.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general__.cpp -o general__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general___.cpp -o general___.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/uoconv.cpp -o uoconv.o /bin/rm -f libgeneral.a .libgeneral.a.stamp ar cr libgeneral.a general__.o general___.o uoconv.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgeneral.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libgeneral.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libgeneral.a /bin/ln -f .general.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.general.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/general' /usr/pkg/bin/gmake -C test -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/general' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/general/test' /usr/pkg/bin/gmake -C unit_test -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/general' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/general/unit_test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/general' /usr/pkg/bin/gmake -C biblio -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh biblio all Platform not defined for NetBSD alpha -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biblio' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio TMPL=biblio -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biblio' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio TMPL=biblio -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biblio' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/citation_base.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio__.cpp -o biblio__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio___.cpp -o biblio___.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/citation_base.cpp -o citation_base.o /bin/rm -f libbiblio.a .libbiblio.a.stamp ar cr libbiblio.a biblio__.o biblio___.o citation_base.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libbiblio.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libbiblio.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libbiblio.a /bin/ln -f .biblio.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.biblio.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biblio' /usr/pkg/bin/gmake -C medline -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh medline all Platform not defined for NetBSD alpha -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medline' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline TMPL=medline -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medline' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline TMPL=medline -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medline' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline__.cpp -o medline__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline___.cpp -o medline___.o /bin/rm -f libmedline.a .libmedline.a.stamp ar cr libmedline.a medline__.o medline___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedline.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libmedline.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libmedline.a /bin/ln -f .medline.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.medline.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medline' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medline' /usr/pkg/bin/gmake -C pub -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh pub all Platform not defined for NetBSD alpha -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pub' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub TMPL=pub -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pub' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub TMPL=pub -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pub' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub__.cpp -o pub__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub___.cpp -o pub___.o /bin/rm -f libpub.a .libpub.a.stamp ar cr libpub.a pub__.o pub___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpub.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libpub.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libpub.a /bin/ln -f .pub.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.pub.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pub' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pub' /usr/pkg/bin/gmake -C seqcode -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqcode && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh seqcode all Platform not defined for NetBSD alpha -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqcode' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqcode' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqcode' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqcode' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqcode' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqcode TMPL=seqcode -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqcode' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqcode TMPL=seqcode -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqcode' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqcode' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqcode' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqcode/seqcode___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqcode/seqcode__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqcode/seqcode__.cpp -o seqcode__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqcode/seqcode___.cpp -o seqcode___.o /bin/rm -f libseqcode.a .libseqcode.a.stamp ar cr libseqcode.a seqcode__.o seqcode___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqcode.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqcode.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libseqcode.a /bin/ln -f .seqcode.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.seqcode.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqcode' /usr/pkg/bin/gmake -C seq -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/unit_test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT test/Makefile test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/unit_test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/unit_test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq/test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq/unit_test/Makefile gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/Makefile.sources builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -w -j3 --jobserver-auth=14,15 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. Platform not defined for NetBSD alpha -- please fix me gmake[6]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[6]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[6]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[6]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[6]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[6]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq' status=0 ; \ MAKE="/usr/pkg/bin/gmake -w -j3 --jobserver-auth=17,19"; \ export MAKE; \ for x in seqalign seqblock seqfeat seqloc seqres seqtable; do \ d=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../$x ; \ (cd $d && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh) || status=9 ; \ test -f ${x}__.cpp || \ echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \ test -f ${x}___.cpp || \ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status /usr/pkg/bin/gmake -w -j3 --jobserver-auth=17,19 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=17,19 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqblock' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqblock' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=17,19 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=17,19 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=17,19 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqres' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqres' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=17,19 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqtable' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqtable' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq' cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh seq all Platform not defined for NetBSD alpha -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqblock/seqblock.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqres/seqres.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq TMPL=seq -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq TMPL=seq -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqblock/seqblock.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqres/seqres.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq' In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:9:0, from seqalign__.cpp:1: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp: In member function 'void ncbi::objects::CSeq_align::RemapToLoc(ncbi::objects::CSeq_align_Base::TDim, const ncbi::objects::CSeq_loc&, bool)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1381:69: warning: 'void ncbi::objects::CDense_seg::RemapToLoc(ncbi::objects::CDense_seg_Base::TDim, const ncbi::objects::CSeq_loc&, bool)' is deprecated [-Wdeprecated-declarations] SetSegs().SetDenseg().RemapToLoc(row, dst_loc, ignore_strand); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:3:0, from seqalign__.cpp:1: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqalign/Dense_seg.cpp:909:6: note: declared here void CDense_seg::RemapToLoc(TDim row, const CSeq_loc& loc, ^~~~~~~~~~ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:9:0, from seqalign__.cpp:1: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1385:62: warning: 'void ncbi::objects::CStd_seg::RemapToLoc(ncbi::objects::CStd_seg_Base::TDim, const ncbi::objects::CSeq_loc&, bool)' is deprecated [-Wdeprecated-declarations] (*std_it)->RemapToLoc(row, dst_loc, ignore_strand); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:42:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:9, from seqalign__.cpp:1: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objects/seqalign/Std_seg.hpp:79:26: note: declared here NCBI_DEPRECATED void RemapToLoc(TDim row, ^~~~~~~~~~ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:9:0, from seqalign__.cpp:1: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1390:68: warning: 'void ncbi::objects::CSeq_align::RemapToLoc(ncbi::objects::CSeq_align_Base::TDim, const ncbi::objects::CSeq_loc&, bool)' is deprecated [-Wdeprecated-declarations] (*seq_align_it)->RemapToLoc(row, dst_loc, ignore_strand); ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1364:6: note: declared here void CSeq_align::RemapToLoc(TDim row, ^~~~~~~~~~ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:30:0, from seqfeat__.cpp:1: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqfeat/PCRPrimerSeq.cpp: In static member function 'static bool ncbi::objects::CPCRPrimerSeq::Fixi(std::__cxx11::string&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqfeat/PCRPrimerSeq.cpp:249:72: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pos = NStr::Find(seq, "i", pos, NPOS, NStr::eFirst, NStr::eCase); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistd.hpp:37:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:35, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:42:0, from seqfeat__.cpp:1: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqfeat/RNA_ref.cpp: In function 'ncbi::CTempString ncbi::objects::s_AaName(int)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqfeat/RNA_ref.cpp:124:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (idx > 0 && idx < ArraySize(sc_TrnaList)) { ~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqloc/seqloc__.cpp:10:0, from seqloc__.cpp:1: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqloc/Seq_id.cpp: In member function 'void ncbi::objects::CSeq_id::GetLabel(std::__cxx11::string*, int*, ncbi::objects::CSeq_id::ELabelType) const': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqloc/Seq_id.cpp:1676:12: warning: enumeration value 'eFastaContent' not handled in switch [-Wswitch] switch (type) { ^ gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq_loc_from_string.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/so_map.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/sofa_map.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seqlocinfo.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq_loc_mapper_base.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq_id_mapper.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq_id_handle.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq_id_tree.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seqport_util.cpp. Updating dependency information for seqtable___.cpp. Updating dependency information for seqres___.cpp. Updating dependency information for seqloc___.cpp. Updating dependency information for seqfeat___.cpp. Updating dependency information for seqblock___.cpp. Updating dependency information for seqalign___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq___.cpp. Updating dependency information for seqtable__.cpp. Updating dependency information for seqres__.cpp. Updating dependency information for seqloc__.cpp. Updating dependency information for seqfeat__.cpp. Updating dependency information for seqblock__.cpp. Updating dependency information for seqalign__.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq__.cpp -o seq__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include seqalign__.cpp -o seqalign__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include seqblock__.cpp -o seqblock__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include seqfeat__.cpp -o seqfeat__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include seqloc__.cpp -o seqloc__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include seqres__.cpp -o seqres__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include seqtable__.cpp -o seqtable__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq___.cpp -o seq___.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include seqalign___.cpp -o seqalign___.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include seqblock___.cpp -o seqblock___.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include seqfeat___.cpp -o seqfeat___.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include seqloc___.cpp -o seqloc___.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 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-I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include seqtable___.cpp -o seqtable___.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seqport_util.cpp -o seqport_util.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq_id_tree.cpp -o seq_id_tree.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq_id_handle.cpp -o seq_id_handle.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I//tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp: In member function 'void ncbi::objects::CSeq_align_Mapper_Base::x_GetDstStd(ncbi::CRef&) const': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp:1505:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( row_n == p_row ) { ~~~~~~^~~~~~~~ usr/pkg/include/python3.8 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq_id_mapper.cpp -o seq_id_mapper.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq_loc_mapper_base.cpp -o seq_loc_mapper_base.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp -o seq_align_mapper_base.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seqlocinfo.cpp -o seqlocinfo.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/sofa_map.cpp -o sofa_map.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/so_map.cpp -o so_map.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq_loc_from_string.cpp -o seq_loc_from_string.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp -o seq_loc_reverse_complementer.o /bin/rm -f libseq.a .libseq.a.stamp ar cr libseq.a seq__.o seqalign__.o seqblock__.o seqfeat__.o seqloc__.o seqres__.o seqtable__.o seq___.o seqalign___.o seqblock___.o seqfeat___.o seqloc___.o seqres___.o seqtable___.o seqport_util.o seq_id_tree.o seq_id_handle.o seq_id_mapper.o seq_loc_mapper_base.o seq_align_mapper_base.o seqlocinfo.o sofa_map.o so_map.o seq_loc_from_string.o seq_loc_reverse_complementer.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseq.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libseq.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libseq.a /bin/ln -f .seq.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.seq.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq' /usr/pkg/bin/gmake -C test -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq/test' /usr/pkg/bin/gmake -C unit_test -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq/unit_test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq' /usr/pkg/bin/gmake -C seqset -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqset/test/Makefile cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh seqset all Platform not defined for NetBSD alpha -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqset' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset TMPL=seqset -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqset' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset TMPL=seqset -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqset' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/gb_release_file.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset__.cpp -o seqset__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset___.cpp -o seqset___.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/gb_release_file.cpp -o gb_release_file.o /bin/rm -f libseqset.a .libseqset.a.stamp ar cr libseqset.a seqset__.o seqset___.o gb_release_file.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqset.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqset.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libseqset.a /bin/ln -f .seqset.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.seqset.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqset' /usr/pkg/bin/gmake -C test -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqset/test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqset' /usr/pkg/bin/gmake -C submit -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/submit && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh submit all Platform not defined for NetBSD alpha -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/submit' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/submit' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/submit' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/submit' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/submit' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/submit TMPL=submit -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/submit' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/submit TMPL=submit -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/submit' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/submit' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/submit' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/submit/submit___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/submit/submit__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/submit/submit__.cpp -o submit__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/submit/submit___.cpp -o submit___.o /bin/rm -f libsubmit.a .libsubmit.a.stamp ar cr libsubmit.a submit__.o submit___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsubmit.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libsubmit.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libsubmit.a /bin/ln -f .submit.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.submit.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/submit' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/submit' /usr/pkg/bin/gmake -C seqedit -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqedit && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh seqedit all Platform not defined for NetBSD alpha -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqedit' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqedit' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqedit' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqedit' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqedit' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqedit TMPL=seqedit -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqedit' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqedit TMPL=seqedit -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqedit' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqedit' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqedit' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqedit/seqedit___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqedit/seqedit__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqedit/seqedit__.cpp -o seqedit__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqedit/seqedit___.cpp -o seqedit___.o /bin/rm -f libseqedit.a .libseqedit.a.stamp ar cr libseqedit.a seqedit__.o seqedit___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqedit.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqedit.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libseqedit.a /bin/ln -f .seqedit.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.seqedit.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqedit' /usr/pkg/bin/gmake -C seqsplit -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqsplit && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh seqsplit all Platform not defined for NetBSD alpha -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqsplit' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqsplit' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqsplit' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqsplit' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqsplit' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqsplit TMPL=seqsplit -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqsplit' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqsplit TMPL=seqsplit -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqsplit' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqsplit' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqsplit' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqsplit/seqsplit___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqsplit/seqsplit__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqsplit/seqsplit__.cpp -o seqsplit__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqsplit/seqsplit___.cpp -o seqsplit___.o /bin/rm -f libseqsplit.a .libseqsplit.a.stamp ar cr libseqsplit.a seqsplit__.o seqsplit___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqsplit.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqsplit.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libseqsplit.a /bin/ln -f .seqsplit.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.seqsplit.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqsplit' /usr/pkg/bin/gmake -C id1 -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id1/test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id1/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id1/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1/test/Makefile cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id1 && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh id1 all Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j3 --jobserver-auth=14,15 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id1' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id1' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id1' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id1' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id1 TMPL=id1 -w -j3 --jobserver-auth=14,15 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id1 TMPL=id1cli -w -j3 --jobserver-auth=14,15 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id1 TMPL=id1 -w -j3 --jobserver-auth=14,15 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -w -j3 --jobserver-auth=14,15 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id1' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id1' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id1/id1___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id1/id1__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id1/id1__.cpp -o id1__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id1/id1___.cpp -o id1___.o /bin/rm -f libid1.a .libid1.a.stamp ar cr libid1.a id1__.o id1___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libid1.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libid1.a /bin/ln -f .id1.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.id1.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id1 TMPL=id1cli -w -j3 --jobserver-auth=14,15 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id1/id1_client_.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id1/id1_client.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id1/id1_client.cpp -o id1_client.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id1/id1_client_.cpp -o id1_client_.o /bin/rm -f libid1cli.a .libid1cli.a.stamp ar cr libid1cli.a id1_client.o id1_client_.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1cli.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libid1cli.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libid1cli.a /bin/ln -f .id1cli.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.id1cli.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' /usr/pkg/bin/gmake -C test -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1/test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' /usr/pkg/bin/gmake -C id2 -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id2 && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh id2 all Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j3 --jobserver-auth=14,15 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqsplit/seqsplit.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id2' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id2' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id2' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id2 TMPL=id2 -w -j3 --jobserver-auth=14,15 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id2 TMPL=id2cli -w -j3 --jobserver-auth=14,15 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id2 TMPL=id2 -w -j3 --jobserver-auth=14,15 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -w -j3 --jobserver-auth=14,15 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqsplit/seqsplit.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id2' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id2' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id2/id2___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id2/id2__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id2/id2__.cpp -o id2__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id2/id2___.cpp -o id2___.o /bin/rm -f libid2.a .libid2.a.stamp ar cr libid2.a id2__.o id2___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libid2.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libid2.a /bin/ln -f .id2.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.id2.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id2 TMPL=id2cli -w -j3 --jobserver-auth=14,15 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id2/id2_client_.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id2/id2_client.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id2/id2_client.cpp -o id2_client.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id2/id2_client_.cpp -o id2_client_.o /bin/rm -f libid2cli.a .libid2cli.a.stamp ar cr libid2cli.a id2_client.o id2_client_.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2cli.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libid2cli.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libid2cli.a /bin/ln -f .id2cli.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.id2cli.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' /usr/pkg/bin/gmake -C entrez2 -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2/demo/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2/demo/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2/demo/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT demo/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2/demo/Makefile cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2 && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh entrez2 all Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j3 --jobserver-auth=14,15 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2 TMPL=entrez2 -w -j3 --jobserver-auth=14,15 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2 TMPL=entrez2cli -w -j3 --jobserver-auth=14,15 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2 TMPL=entrez2 -w -j3 --jobserver-auth=14,15 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -w -j3 --jobserver-auth=14,15 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2/entrez2___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2/entrez2__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2/entrez2__.cpp -o entrez2__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2/entrez2___.cpp -o entrez2___.o /bin/rm -f libentrez2.a .libentrez2.a.stamp ar cr libentrez2.a entrez2__.o entrez2___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libentrez2.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libentrez2.a /bin/ln -f .entrez2.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.entrez2.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2 TMPL=entrez2cli -w -j3 --jobserver-auth=14,15 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2/entrez2_client_.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2/entrez2_client.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2/entrez2_client.cpp -o entrez2_client.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2/entrez2_client_.cpp -o entrez2_client_.o /bin/rm -f libentrez2cli.a .libentrez2cli.a.stamp ar cr libentrez2cli.a entrez2_client.o entrez2_client_.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2cli.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libentrez2cli.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libentrez2cli.a /bin/ln -f .entrez2cli.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.entrez2cli.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' /usr/pkg/bin/gmake -C demo -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2/demo' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' /usr/pkg/bin/gmake -C pubmed -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh pubmed all Platform not defined for NetBSD alpha -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pubmed' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed TMPL=pubmed -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pubmed' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed TMPL=pubmed -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pubmed' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed/pubmed___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed/pubmed__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed/pubmed__.cpp -o pubmed__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed/pubmed___.cpp -o pubmed___.o /bin/rm -f libpubmed.a .libpubmed.a.stamp ar cr libpubmed.a pubmed__.o pubmed___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpubmed.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libpubmed.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libpubmed.a /bin/ln -f .pubmed.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.pubmed.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pubmed' /usr/pkg/bin/gmake -C medlars -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medlars && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh medlars all Platform not defined for NetBSD alpha -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medlars' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medlars' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medlars' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medlars' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medlars' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medlars TMPL=medlars -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medlars' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medlars TMPL=medlars -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medlars' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medlars' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medlars' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medlars/medlars___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medlars/medlars__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medlars/medlars__.cpp -o medlars__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medlars/medlars___.cpp -o medlars___.o /bin/rm -f libmedlars.a .libmedlars.a.stamp ar cr libmedlars.a medlars__.o medlars___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedlars.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libmedlars.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libmedlars.a /bin/ln -f .medlars.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.medlars.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medlars' /usr/pkg/bin/gmake -C mla -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mla && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh mla all Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j3 --jobserver-auth=14,15 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medlars/medlars.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed/pubmed.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mla' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mla' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mla' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mla' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mla TMPL=mla -w -j3 --jobserver-auth=14,15 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mla TMPL=mlacli -w -j3 --jobserver-auth=14,15 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mla TMPL=mla -w -j3 --jobserver-auth=14,15 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -w -j3 --jobserver-auth=14,15 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medlars/medlars.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed/pubmed.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mla' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mla' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mla/mla___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mla/mla__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mla/mla__.cpp -o mla__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mla/mla___.cpp -o mla___.o /bin/rm -f libmla.a .libmla.a.stamp ar cr libmla.a mla__.o mla___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmla.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libmla.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libmla.a /bin/ln -f .mla.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.mla.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mla TMPL=mlacli -w -j3 --jobserver-auth=14,15 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mla/mla_client_.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mla/mla_client.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mla/mla_client.cpp -o mla_client.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mla/mla_client_.cpp -o mla_client_.o /bin/rm -f libmlacli.a .libmlacli.a.stamp ar cr libmlacli.a mla_client.o mla_client_.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmlacli.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libmlacli.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libmlacli.a /bin/ln -f .mlacli.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.mlacli.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' /usr/pkg/bin/gmake -C proj -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/proj && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh proj all Platform not defined for NetBSD alpha -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=proj MODULE_PATH=objects/proj MODULE_ASN=proj.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pubmed/pubmed objects/seqloc/seqloc objects/seq/seq objects/seqset/seqset' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed/pubmed.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/proj' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/proj' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/proj' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/proj' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/proj' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/proj TMPL=proj -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/proj' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/proj TMPL=proj -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=proj MODULE_PATH=objects/proj MODULE_ASN=proj.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pubmed/pubmed objects/seqloc/seqloc objects/seq/seq objects/seqset/seqset' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed/pubmed.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/proj' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/proj' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/proj' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/proj/proj___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/proj/proj__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/proj/proj__.cpp -o proj__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/proj/proj___.cpp -o proj___.o /bin/rm -f libproj.a .libproj.a.stamp ar cr libproj.a proj__.o proj___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libproj.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libproj.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libproj.a /bin/ln -f .proj.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.proj.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/proj' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/proj' /usr/pkg/bin/gmake -C scoremat -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh scoremat all Platform not defined for NetBSD alpha -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/scoremat' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat TMPL=scoremat -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/scoremat' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat TMPL=scoremat -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/scoremat' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat/scoremat___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat/scoremat__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat/scoremat__.cpp -o scoremat__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat/scoremat___.cpp -o scoremat___.o /bin/rm -f libscoremat.a .libscoremat.a.stamp ar cr libscoremat.a scoremat__.o scoremat___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libscoremat.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libscoremat.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libscoremat.a /bin/ln -f .scoremat.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.scoremat.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/scoremat' /usr/pkg/bin/gmake -C blast -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blast && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh blast all Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j3 --jobserver-auth=14,15 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat/scoremat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blast' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blast' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blast' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blast TMPL=blast -w -j3 --jobserver-auth=14,15 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blast TMPL=xnetblastcli -w -j3 --jobserver-auth=14,15 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blast TMPL=blast -w -j3 --jobserver-auth=14,15 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -w -j3 --jobserver-auth=14,15 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat/scoremat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blast' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blast' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blast/names.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blast/blast___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blast/blast__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blast/blast__.cpp -o blast__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blast/blast___.cpp -o blast___.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blast/names.cpp -o names.o /bin/rm -f libxnetblast.a .libxnetblast.a.stamp ar cr libxnetblast.a blast__.o blast___.o names.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblast.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxnetblast.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxnetblast.a /bin/ln -f .xnetblast.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xnetblast.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blast TMPL=xnetblastcli -w -j3 --jobserver-auth=14,15 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blast/blastclient_.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blast/blastclient.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blast/blastclient.cpp -o blastclient.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blast/blastclient_.cpp -o blastclient_.o /bin/rm -f libxnetblastcli.a .libxnetblastcli.a.stamp ar cr libxnetblastcli.a blastclient.o blastclient_.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblastcli.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxnetblastcli.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxnetblastcli.a /bin/ln -f .xnetblastcli.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xnetblastcli.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' /usr/pkg/bin/gmake -C blastdb -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastdb && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh blastdb all Platform not defined for NetBSD alpha -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastdb' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastdb' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastdb' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastdb' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastdb' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastdb TMPL=blastdb -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastdb' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastdb TMPL=blastdb -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastdb' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastdb' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastdb' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastdb/blastdb___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastdb/blastdb__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastdb/blastdb__.cpp -o blastdb__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastdb/blastdb___.cpp -o blastdb___.o /bin/rm -f libblastdb.a .libblastdb.a.stamp ar cr libblastdb.a blastdb__.o blastdb___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libblastdb.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libblastdb.a /bin/ln -f .blastdb.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.blastdb.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastdb' /usr/pkg/bin/gmake -C blastxml -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh blastxml all Platform not defined for NetBSD alpha -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml TMPL=blastxml -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml TMPL=blastxml -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml/blastxml___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml/blastxml__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml/blastxml__.cpp -o blastxml__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml/blastxml___.cpp -o blastxml___.o /bin/rm -f libblastxml.a .libblastxml.a.stamp ar cr libblastxml.a blastxml__.o blastxml___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libblastxml.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libblastxml.a /bin/ln -f .blastxml.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.blastxml.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml' /usr/pkg/bin/gmake -C blastxml2 -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml2 && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh blastxml2 all Platform not defined for NetBSD alpha -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml2' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml2' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml2' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml2' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml2' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml2 TMPL=blastxml2 -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml2' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml2 TMPL=blastxml2 -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml2' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml2' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml2' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml2/blastxml2___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml2/blastxml2__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml2/blastxml2__.cpp -o blastxml2__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml2/blastxml2___.cpp -o blastxml2___.o /bin/rm -f libblastxml2.a .libblastxml2.a.stamp ar cr libblastxml2.a blastxml2__.o blastxml2___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml2.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libblastxml2.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libblastxml2.a /bin/ln -f .blastxml2.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.blastxml2.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml2' /usr/pkg/bin/gmake -C mmdb -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mmdb' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb/Makefile.sources builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb -w -j3 --jobserver-auth=14,15 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. Platform not defined for NetBSD alpha -- please fix me gmake[6]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[6]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... Platform not defined for NetBSD alpha -- please fix me gmake[6]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mmdb' status=0 ; \ MAKE="/usr/pkg/bin/gmake -w -j3 --jobserver-auth=17,19"; \ export MAKE; \ for x in mmdb1 mmdb2 mmdb3; do \ d=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb/../$x ; \ (cd $d && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh) || status=9 ; \ test -f ${x}__.cpp || \ echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \ test -f ${x}___.cpp || \ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status /usr/pkg/bin/gmake -w -j3 --jobserver-auth=17,19 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb1 MODULE_PATH=objects/mmdb1 MODULE_ASN=mmdb1.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb2/mmdb2 objects/mmdb3/mmdb3' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb2/mmdb2.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb1' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb1' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=17,19 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb2 MODULE_PATH=objects/mmdb2 MODULE_ASN=mmdb2.asn MODULE_IMPORT='objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb3/mmdb3' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb1/mmdb1.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb2' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb2' /usr/pkg/bin/gmake -w -j3 --jobserver-auth=17,19 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb3 MODULE_PATH=objects/mmdb3 MODULE_ASN=mmdb3.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb2/mmdb2' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb1/mmdb1.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb2/mmdb2.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb3' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb3' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mmdb' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb TMPL=mmdb -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mmdb' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb TMPL=mmdb -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mmdb' Updating dependency information for mmdb3___.cpp. Updating dependency information for mmdb2___.cpp. Updating dependency information for mmdb1___.cpp. Updating dependency information for mmdb3__.cpp. Updating dependency information for mmdb2__.cpp. Updating dependency information for mmdb1__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include mmdb1__.cpp -o mmdb1__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include mmdb2__.cpp -o mmdb2__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include mmdb3__.cpp -o mmdb3__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include mmdb1___.cpp -o mmdb1___.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include mmdb2___.cpp -o mmdb2___.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include mmdb3___.cpp -o mmdb3___.o /bin/rm -f libmmdb.a .libmmdb.a.stamp ar cr libmmdb.a mmdb1__.o mmdb2__.o mmdb3__.o mmdb1___.o mmdb2___.o mmdb3___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmmdb.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libmmdb.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libmmdb.a /bin/ln -f .mmdb.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.mmdb.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mmdb' /usr/pkg/bin/gmake -C cn3d -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh cn3d all Platform not defined for NetBSD alpha -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=cn3d MODULE_PATH=objects/cn3d MODULE_ASN=cn3d.asn MODULE_IMPORT='objects/mmdb1/mmdb1' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb1/mmdb1.asn' IMPFILES='objects/mmdb1/mmdb1.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cn3d' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d TMPL=cn3d -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cn3d' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d TMPL=cn3d -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=cn3d MODULE_PATH=objects/cn3d MODULE_ASN=cn3d.asn MODULE_IMPORT='objects/mmdb1/mmdb1' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb1/mmdb1.asn' IMPFILES='objects/mmdb1/mmdb1.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cn3d' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d/cn3d___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d/cn3d__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d/cn3d__.cpp -o cn3d__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d/cn3d___.cpp -o cn3d___.o /bin/rm -f libcn3d.a .libcn3d.a.stamp ar cr libcn3d.a cn3d__.o cn3d___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcn3d.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libcn3d.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libcn3d.a /bin/ln -f .cn3d.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.cn3d.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cn3d' /usr/pkg/bin/gmake -C cdd -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cdd && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh cdd all Platform not defined for NetBSD alpha -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=cdd MODULE_PATH=objects/cdd MODULE_ASN=cdd.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seqalign/seqalign objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/scoremat/scoremat' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb1/mmdb1.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb2/mmdb2.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb3/mmdb3.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d/cn3d.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat/scoremat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cdd' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cdd' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cdd' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cdd' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cdd' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cdd TMPL=cdd -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cdd' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cdd TMPL=cdd -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=cdd MODULE_PATH=objects/cdd MODULE_ASN=cdd.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seqalign/seqalign objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/scoremat/scoremat' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb1/mmdb1.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb2/mmdb2.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb3/mmdb3.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d/cn3d.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat/scoremat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cdd' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cdd' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cdd' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cdd/cdd___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cdd/cdd__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cdd/cdd__.cpp -o cdd__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cdd/cdd___.cpp -o cdd___.o /bin/rm -f libcdd.a .libcdd.a.stamp ar cr libcdd.a cdd__.o cdd___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcdd.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libcdd.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libcdd.a /bin/ln -f .cdd.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.cdd.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cdd' /usr/pkg/bin/gmake -C ncbimime -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/ncbimime/test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/ncbimime/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/ncbimime/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/ncbimime/test/Makefile cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/ncbimime && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh ncbimime all Platform not defined for NetBSD alpha -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=ncbimime MODULE_PATH=objects/ncbimime MODULE_ASN=ncbimime.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/cdd/cdd' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb1/mmdb1.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb2/mmdb2.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb3/mmdb3.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d/cn3d.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cdd/cdd.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/ncbimime' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/ncbimime' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/ncbimime' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/ncbimime' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/ncbimime' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/ncbimime TMPL=ncbimime -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/ncbimime' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/ncbimime TMPL=ncbimime -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=ncbimime MODULE_PATH=objects/ncbimime MODULE_ASN=ncbimime.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/cdd/cdd' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb1/mmdb1.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb2/mmdb2.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb3/mmdb3.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d/cn3d.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cdd/cdd.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/ncbimime' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/ncbimime' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/ncbimime' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/ncbimime/ncbimime___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/ncbimime/ncbimime__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/ncbimime/ncbimime__.cpp -o ncbimime__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/ncbimime/ncbimime___.cpp -o ncbimime___.o /bin/rm -f libncbimime.a .libncbimime.a.stamp ar cr libncbimime.a ncbimime__.o ncbimime___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbimime.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbimime.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libncbimime.a /bin/ln -f .ncbimime.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.ncbimime.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/ncbimime' /usr/pkg/bin/gmake -C test -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/ncbimime/test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/ncbimime' /usr/pkg/bin/gmake -C pcsubstance -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcsubstance && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh pcsubstance all Platform not defined for NetBSD alpha -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=pcsubstance MODULE_PATH=objects/pcsubstance MODULE_ASN=pcsubstance.asn MODULE_IMPORT='objects/general/general objects/pub/pub' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcsubstance' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcsubstance' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcsubstance' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcsubstance' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcsubstance' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcsubstance TMPL=pcsubstance -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcsubstance' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcsubstance TMPL=pcsubstance -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=pcsubstance MODULE_PATH=objects/pcsubstance MODULE_ASN=pcsubstance.asn MODULE_IMPORT='objects/general/general objects/pub/pub' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcsubstance' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcsubstance' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcsubstance' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcsubstance/pcsubstance___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcsubstance/pcsubstance__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcsubstance/pcsubstance__.cpp -o pcsubstance__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcsubstance/pcsubstance___.cpp -o pcsubstance___.o /bin/rm -f libpcsubstance.a .libpcsubstance.a.stamp ar cr libpcsubstance.a pcsubstance__.o pcsubstance___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpcsubstance.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libpcsubstance.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libpcsubstance.a /bin/ln -f .pcsubstance.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.pcsubstance.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcsubstance' /usr/pkg/bin/gmake -C pcassay -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcassay && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh pcassay all Platform not defined for NetBSD alpha -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=pcassay MODULE_PATH=objects/pcassay MODULE_ASN=pcassay.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcassay' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcassay' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcassay' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcassay' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcassay' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcassay TMPL=pcassay -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcassay' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcassay TMPL=pcassay -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=pcassay MODULE_PATH=objects/pcassay MODULE_ASN=pcassay.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcassay' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcassay' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcassay' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcassay/pcassay___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcassay/pcassay__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcassay/pcassay__.cpp -o pcassay__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcassay/pcassay___.cpp -o pcassay___.o /bin/rm -f libpcassay.a .libpcassay.a.stamp ar cr libpcassay.a pcassay__.o pcassay___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpcassay.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libpcassay.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libpcassay.a /bin/ln -f .pcassay.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.pcassay.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcassay' /usr/pkg/bin/gmake -C gbseq -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbseq && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh gbseq all Platform not defined for NetBSD alpha -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbseq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbseq' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbseq' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbseq' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbseq' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbseq TMPL=gbseq -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbseq' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbseq TMPL=gbseq -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbseq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbseq' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbseq' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbseq/gbseq___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbseq/gbseq__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbseq/gbseq__.cpp -o gbseq__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbseq/gbseq___.cpp -o gbseq___.o /bin/rm -f libgbseq.a .libgbseq.a.stamp ar cr libgbseq.a gbseq__.o gbseq___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbseq.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libgbseq.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libgbseq.a /bin/ln -f .gbseq.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.gbseq.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbseq' /usr/pkg/bin/gmake -C insdseq -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/insdseq && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh insdseq all Platform not defined for NetBSD alpha -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=insdseq MODULE_PATH=objects/insdseq MODULE_ASN=insdseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/insdseq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/insdseq' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/insdseq' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/insdseq' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/insdseq' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/insdseq TMPL=insdseq -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/insdseq' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/insdseq TMPL=insdseq -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=insdseq MODULE_PATH=objects/insdseq MODULE_ASN=insdseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/insdseq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/insdseq' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/insdseq' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/insdseq/insdseq___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/insdseq/insdseq__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/insdseq/insdseq__.cpp -o insdseq__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/insdseq/insdseq___.cpp -o insdseq___.o /bin/rm -f libinsdseq.a .libinsdseq.a.stamp ar cr libinsdseq.a insdseq__.o insdseq___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libinsdseq.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libinsdseq.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libinsdseq.a /bin/ln -f .insdseq.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.insdseq.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/insdseq' /usr/pkg/bin/gmake -C tinyseq -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/tinyseq && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh tinyseq all Platform not defined for NetBSD alpha -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=tinyseq MODULE_PATH=objects/tinyseq MODULE_ASN=tinyseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/tinyseq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/tinyseq' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/tinyseq' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/tinyseq' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/tinyseq' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/tinyseq TMPL=tinyseq -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/tinyseq' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/tinyseq TMPL=tinyseq -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=tinyseq MODULE_PATH=objects/tinyseq MODULE_ASN=tinyseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/tinyseq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/tinyseq' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/tinyseq' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/tinyseq/tinyseq___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/tinyseq/tinyseq__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/tinyseq/tinyseq__.cpp -o tinyseq__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/tinyseq/tinyseq___.cpp -o tinyseq___.o /bin/rm -f libtinyseq.a .libtinyseq.a.stamp ar cr libtinyseq.a tinyseq__.o tinyseq___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtinyseq.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libtinyseq.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libtinyseq.a /bin/ln -f .tinyseq.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.tinyseq.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/tinyseq' /usr/pkg/bin/gmake -C biotree -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biotree && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh biotree all Platform not defined for NetBSD alpha -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=biotree MODULE_PATH=objects/biotree MODULE_ASN=biotree.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biotree' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biotree' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biotree' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biotree' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biotree' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biotree TMPL=biotree -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biotree' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biotree TMPL=biotree -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=biotree MODULE_PATH=objects/biotree MODULE_ASN=biotree.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biotree' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biotree' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biotree' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biotree/biotree___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biotree/biotree__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biotree/biotree__.cpp -o biotree__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biotree/biotree___.cpp -o biotree___.o /bin/rm -f libbiotree.a .libbiotree.a.stamp ar cr libbiotree.a biotree__.o biotree___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libbiotree.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libbiotree.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libbiotree.a /bin/ln -f .biotree.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.biotree.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biotree' /usr/pkg/bin/gmake -C entrezgene -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrezgene && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh entrezgene all Platform not defined for NetBSD alpha -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=entrezgene MODULE_PATH=objects/entrezgene MODULE_ASN=entrezgene.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrezgene' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrezgene' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrezgene' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrezgene' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrezgene' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrezgene TMPL=entrezgene -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrezgene' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrezgene TMPL=entrezgene -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=entrezgene MODULE_PATH=objects/entrezgene MODULE_ASN=entrezgene.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrezgene' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrezgene' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrezgene' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrezgene/entrezgene___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrezgene/entrezgene__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrezgene/entrezgene__.cpp -o entrezgene__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrezgene/entrezgene___.cpp -o entrezgene___.o /bin/rm -f libentrezgene.a .libentrezgene.a.stamp ar cr libentrezgene.a entrezgene__.o entrezgene___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrezgene.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libentrezgene.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libentrezgene.a /bin/ln -f .entrezgene.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.entrezgene.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrezgene' /usr/pkg/bin/gmake -C omssa -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/omssa && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh omssa all Platform not defined for NetBSD alpha -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=omssa MODULE_PATH=objects/omssa MODULE_ASN=omssa.asn MODULE_IMPORT='objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/omssa' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/omssa' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/omssa' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/omssa' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/omssa' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/omssa TMPL=omssa -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/omssa' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/omssa TMPL=omssa -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=omssa MODULE_PATH=objects/omssa MODULE_ASN=omssa.asn MODULE_IMPORT='objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/omssa' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/omssa' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/omssa' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/omssa/omssa__.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/omssa/omssa___.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/omssa/omssa__.cpp -o omssa__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/omssa/omssa___.cpp -o omssa___.o /bin/rm -f libomssa.a .libomssa.a.stamp ar cr libomssa.a omssa__.o omssa___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libomssa.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libomssa.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libomssa.a /bin/ln -f .omssa.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.omssa.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/omssa' /usr/pkg/bin/gmake -C remap -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/remap && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh remap all Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j3 --jobserver-auth=14,15 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=remap MODULE_PATH=objects/remap MODULE_ASN=remap.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/remap' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/remap' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/remap' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/remap' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/remap TMPL=remap -w -j3 --jobserver-auth=14,15 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/remap TMPL=remapcli -w -j3 --jobserver-auth=14,15 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/remap TMPL=remap -w -j3 --jobserver-auth=14,15 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -w -j3 --jobserver-auth=14,15 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=remap MODULE_PATH=objects/remap MODULE_ASN=remap.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/remap' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/remap' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/remap/remap___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/remap/remap__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/remap/remap__.cpp -o remap__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/remap/remap___.cpp -o remap___.o /bin/rm -f libremap.a .libremap.a.stamp ar cr libremap.a remap__.o remap___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libremap.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libremap.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libremap.a /bin/ln -f .remap.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.remap.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/remap TMPL=remapcli -w -j3 --jobserver-auth=14,15 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/remap/remap_client_.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/remap/remap_client.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/remap/remap_client.cpp -o remap_client.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/remap/remap_client_.cpp -o remap_client_.o /bin/rm -f libremapcli.a .libremapcli.a.stamp ar cr libremapcli.a remap_client.o remap_client_.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libremapcli.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libremapcli.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libremapcli.a /bin/ln -f .remapcli.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.remapcli.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' /usr/pkg/bin/gmake -C seqtest -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqtest && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh seqtest all Platform not defined for NetBSD alpha -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqtest MODULE_PATH=objects/seqtest MODULE_ASN=seqtest.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqtest' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqtest' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqtest' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqtest' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqtest' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqtest TMPL=seqtest -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqtest' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqtest TMPL=seqtest -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqtest MODULE_PATH=objects/seqtest MODULE_ASN=seqtest.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqtest' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqtest' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqtest' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqtest/seqtest___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqtest/seqtest__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqtest/seqtest__.cpp -o seqtest__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqtest/seqtest___.cpp -o seqtest___.o /bin/rm -f libseqtest.a .libseqtest.a.stamp ar cr libseqtest.a seqtest__.o seqtest___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqtest.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqtest.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libseqtest.a /bin/ln -f .seqtest.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.seqtest.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqtest' /usr/pkg/bin/gmake -C taxon1 -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1 && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh taxon1 all Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j3 --jobserver-auth=14,15 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1 TMPL=taxon1 -w -j3 --jobserver-auth=14,15 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1 TMPL=local_taxon -w -j3 --jobserver-auth=14,15 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1 TMPL=taxon1 -w -j3 --jobserver-auth=14,15 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -w -j3 --jobserver-auth=14,15 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1/cache.cpp: In member function 'void ncbi::objects::CDomainStorage::AddField(int, int, const string&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1/cache.cpp:786:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if( m_types.size() <= field_no ) { ~~~~~~~~~~~~~~~^~~~~~~~~~~ gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1/ctreecont.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1/utils.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1/cache.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1/taxon1.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1/taxon1___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1/taxon1__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1/taxon1__.cpp -o taxon1__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1/taxon1___.cpp -o taxon1___.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1/taxon1.cpp -o taxon1.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1/cache.cpp -o cache.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1/utils.cpp -o utils.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1/ctreecont.cpp -o ctreecont.o /bin/rm -f libtaxon1.a .libtaxon1.a.stamp ar cr libtaxon1.a taxon1__.o taxon1___.o taxon1.o cache.o utils.o ctreecont.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon1.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libtaxon1.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libtaxon1.a /bin/ln -f .taxon1.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.taxon1.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1 TMPL=local_taxon -w -j3 --jobserver-auth=14,15 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1/local_taxon.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1/local_taxon.cpp -o local_taxon.o /bin/rm -f liblocal_taxon.a .liblocal_taxon.a.stamp ar cr liblocal_taxon.a local_taxon.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f liblocal_taxon.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f liblocal_taxon.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/liblocal_taxon.a /bin/ln -f .local_taxon.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.local_taxon.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' /usr/pkg/bin/gmake -C taxon3 -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon3 && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh taxon3 all Platform not defined for NetBSD alpha -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon3' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon3' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon3' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon3' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon3' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon3 TMPL=taxon3 -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon3' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon3 TMPL=taxon3 -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon3' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon3' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon3' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon3/taxon3.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon3/taxon3___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon3/taxon3__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon3/taxon3__.cpp -o taxon3__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon3/taxon3___.cpp -o taxon3___.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon3/taxon3.cpp -o taxon3.o /bin/rm -f libtaxon3.a .libtaxon3.a.stamp ar cr libtaxon3.a taxon3__.o taxon3___.o taxon3.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon3.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libtaxon3.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libtaxon3.a /bin/ln -f .taxon3.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.taxon3.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon3' /usr/pkg/bin/gmake -C gbproj -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh gbproj all Platform not defined for NetBSD alpha -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=gbproj MODULE_PATH=objects/gbproj MODULE_ASN=gbproj.asn MODULE_IMPORT='objects/seq/seq objects/seqloc/seqloc objects/seqset/seqset objects/general/general objects/submit/submit objects/seqalign/seqalign' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/submit/submit.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbproj' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj TMPL=gbproj -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbproj' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj TMPL=gbproj -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=gbproj MODULE_PATH=objects/gbproj MODULE_ASN=gbproj.asn MODULE_IMPORT='objects/seq/seq objects/seqloc/seqloc objects/seqset/seqset objects/general/general objects/submit/submit objects/seqalign/seqalign' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/submit/submit.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj' In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj/gbproj__.cpp:9:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj/ProjectFolder.cpp: In member function 'void ncbi::objects::CProjectFolder::RemoveAllChildItems()': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj/ProjectFolder.cpp:310:27: warning: unused variable 'item' [-Wunused-variable] CProjectItem& item = **it; ^~~~ gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbproj' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj/gbproj___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj/gbproj__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj/gbproj__.cpp -o gbproj__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj/gbproj___.cpp -o gbproj___.o /bin/rm -f libgbproj.a .libgbproj.a.stamp ar cr libgbproj.a gbproj__.o gbproj___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbproj.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libgbproj.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libgbproj.a /bin/ln -f .gbproj.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.gbproj.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbproj' /usr/pkg/bin/gmake -C trackmgr -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh trackmgr all Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j3 --jobserver-auth=14,15 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=trackmgr MODULE_PATH=objects/trackmgr MODULE_ASN=trackmgr.asn MODULE_IMPORT='objects/seqloc/seqloc objects/general/general' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqloc/seqloc.asn objects/general/general.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr TMPL=trackmgr -w -j3 --jobserver-auth=14,15 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr TMPL=trackmgrcli -w -j3 --jobserver-auth=14,15 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr TMPL=trackmgrgridcli -w -j3 --jobserver-auth=14,15 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr TMPL=trackmgr -w -j3 --jobserver-auth=14,15 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -w -j3 --jobserver-auth=14,15 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=trackmgr MODULE_PATH=objects/trackmgr MODULE_ASN=trackmgr.asn MODULE_IMPORT='objects/seqloc/seqloc objects/general/general' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqloc/seqloc.asn objects/general/general.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/trackmgr___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/trackmgr__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/trackmgr__.cpp -o trackmgr__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/trackmgr___.cpp -o trackmgr___.o /bin/rm -f libtrackmgr.a .libtrackmgr.a.stamp ar cr libtrackmgr.a trackmgr__.o trackmgr___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgr.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libtrackmgr.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libtrackmgr.a /bin/ln -f .trackmgr.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.trackmgr.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr TMPL=trackmgrcli -w -j3 --jobserver-auth=14,15 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/trackmgr_client_.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/trackmgr_client.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/trackmgr_client.cpp -o trackmgr_client.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/trackmgr_client_.cpp -o trackmgr_client_.o /bin/rm -f libtrackmgrcli.a .libtrackmgrcli.a.stamp ar cr libtrackmgrcli.a trackmgr_client.o trackmgr_client_.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgrcli.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libtrackmgrcli.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libtrackmgrcli.a /bin/ln -f .trackmgrcli.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.trackmgrcli.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr TMPL=trackmgrgridcli -w -j3 --jobserver-auth=14,15 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/supported_assemblies_client.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/createtrackset_client.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/trackset_client.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/track_attrvalue_client.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/switch_context_client.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/item_resolver_client.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/removeusertrack_client.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/createremotetrack_client.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/createusertrack_client.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/displaytrack_client.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/blast_client.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/tms_exception.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/tms_exception.cpp -o tms_exception.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/blast_client.cpp -o blast_client.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/displaytrack_client.cpp -o displaytrack_client.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/createusertrack_client.cpp -o createusertrack_client.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/createremotetrack_client.cpp -o createremotetrack_client.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/removeusertrack_client.cpp -o removeusertrack_client.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/item_resolver_client.cpp -o item_resolver_client.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/switch_context_client.cpp -o switch_context_client.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/track_attrvalue_client.cpp -o track_attrvalue_client.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/trackset_client.cpp -o trackset_client.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/createtrackset_client.cpp -o createtrackset_client.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/supported_assemblies_client.cpp -o supported_assemblies_client.o /bin/rm -f libtrackmgrgridcli.a .libtrackmgrgridcli.a.stamp ar cr libtrackmgrgridcli.a tms_exception.o blast_client.o displaytrack_client.o createusertrack_client.o createremotetrack_client.o removeusertrack_client.o item_resolver_client.o switch_context_client.o track_attrvalue_client.o trackset_client.o createtrackset_client.o supported_assemblies_client.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgrgridcli.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libtrackmgrgridcli.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libtrackmgrgridcli.a /bin/ln -f .trackmgrgridcli.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.trackmgrgridcli.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/pkg/bin/gmake -C valerr -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valerr && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh valerr all Platform not defined for NetBSD alpha -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valerr' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valerr' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valerr' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valerr' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valerr' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valerr TMPL=valerr -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valerr' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valerr TMPL=valerr -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valerr' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valerr' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valerr' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valerr/valerr___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valerr/valerr__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valerr/valerr__.cpp -o valerr__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valerr/valerr___.cpp -o valerr___.o /bin/rm -f libvalerr.a .libvalerr.a.stamp ar cr libvalerr.a valerr__.o valerr___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalerr.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libvalerr.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libvalerr.a /bin/ln -f .valerr.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.valerr.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valerr' /usr/pkg/bin/gmake -C valid -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valid && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh valid all Platform not defined for NetBSD alpha -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valid' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valid' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valid' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valid' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valid' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valid TMPL=valid -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valid' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valid TMPL=valid -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valid' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valid' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valid' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valid/valid___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valid/valid__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valid/valid__.cpp -o valid__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valid/valid___.cpp -o valid___.o /bin/rm -f libvalid.a .libvalid.a.stamp ar cr libvalid.a valid__.o valid___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalid.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libvalid.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libvalid.a /bin/ln -f .valid.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.valid.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valid' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valid' /usr/pkg/bin/gmake -C access -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/access && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh access all Platform not defined for NetBSD alpha -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=access MODULE_PATH=objects/access MODULE_ASN=access.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/access' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/access' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/access' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/access' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/access' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/access' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/access' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/access TMPL=access -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/access' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/access' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/access' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/access TMPL=access -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=access MODULE_PATH=objects/access MODULE_ASN=access.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/access' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/access' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/access' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/access/access___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/access/access__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/access/access__.cpp -o access__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/access/access___.cpp -o access___.o /bin/rm -f libaccess.a .libaccess.a.stamp ar cr libaccess.a access__.o access___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libaccess.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libaccess.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libaccess.a /bin/ln -f .access.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.access.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/access' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/access' /usr/pkg/bin/gmake -C docsum -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/docsum && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh docsum all Platform not defined for NetBSD alpha -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=docsum MODULE_PATH=objects/docsum MODULE_ASN=docsum.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/docsum' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/docsum' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/docsum' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/docsum' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/docsum' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/docsum TMPL=docsum -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/docsum' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/docsum TMPL=docsum -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=docsum MODULE_PATH=objects/docsum MODULE_ASN=docsum.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/docsum' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/docsum' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/docsum' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/docsum/docsum___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/docsum/docsum__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/docsum/docsum__.cpp -o docsum__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/docsum/docsum___.cpp -o docsum___.o /bin/rm -f libdocsum.a .libdocsum.a.stamp ar cr libdocsum.a docsum__.o docsum___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdocsum.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libdocsum.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libdocsum.a /bin/ln -f .docsum.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.docsum.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/docsum' /usr/pkg/bin/gmake -C featdef -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/featdef && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh featdef all Platform not defined for NetBSD alpha -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=featdef MODULE_PATH=objects/featdef MODULE_ASN=featdef.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/featdef' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/featdef' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/featdef' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/featdef' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/featdef' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/featdef TMPL=featdef -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/featdef' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/featdef TMPL=featdef -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=featdef MODULE_PATH=objects/featdef MODULE_ASN=featdef.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/featdef' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/featdef' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/featdef' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/featdef/featdef___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/featdef/featdef__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/featdef/featdef__.cpp -o featdef__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/featdef/featdef___.cpp -o featdef___.o /bin/rm -f libfeatdef.a .libfeatdef.a.stamp ar cr libfeatdef.a featdef__.o featdef___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libfeatdef.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libfeatdef.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libfeatdef.a /bin/ln -f .featdef.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.featdef.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/featdef' /usr/pkg/bin/gmake -C genomecoll -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh genome_collection all Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j3 --jobserver-auth=14,15 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA \ -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll' cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh gencoll_client all Waiting for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/make_asn.lock/usr/pkg/bin/gmake -w -j3 --jobserver-auth=14,15 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA \ -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll' . Acquired /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/make_asn.lock for PID 6472 (make_asn) Platform not defined for NetBSD alpha -- please fix me gmake[5]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j3 --jobserver-auth=14,15 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA \ -oc gencoll_client -or objects/genomecoll -odi -od gencoll_client.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd gencoll_client.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll TMPL=genome_collection -w -j3 --jobserver-auth=14,15 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll TMPL=gencoll_client -w -j3 --jobserver-auth=14,15 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll TMPL=genome_collection -w -j3 --jobserver-auth=14,15 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -w -j3 --jobserver-auth=14,15 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA \ -oc gencoll_client -or objects/genomecoll -odi -od gencoll_client.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd gencoll_client.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/genome_collection___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/genome_collection__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/genome_collection__.cpp -o genome_collection__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/genome_collection___.cpp -o genome_collection___.o /bin/rm -f libgenome_collection.a .libgenome_collection.a.stamp ar cr libgenome_collection.a genome_collection__.o genome_collection___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenome_collection.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libgenome_collection.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libgenome_collection.a /bin/ln -f .genome_collection.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.genome_collection.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll TMPL=gencoll_client -w -j3 --jobserver-auth=14,15 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/cached_assembly.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/genomic_collections_cli_.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/gencoll_client___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/gencoll_client__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/gencoll_client__.cpp -o gencoll_client__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/gencoll_client___.cpp -o gencoll_client___.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp -o genomic_collections_cli.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/genomic_collections_cli_.cpp -o genomic_collections_cli_.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/cached_assembly.cpp -o cached_assembly.o /bin/rm -f libgencoll_client.a .libgencoll_client.a.stamp ar cr libgencoll_client.a gencoll_client__.o gencoll_client___.o genomic_collections_cli.o genomic_collections_cli_.o cached_assembly.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgencoll_client.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libgencoll_client.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libgencoll_client.a /bin/ln -f .gencoll_client.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.gencoll_client.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/pkg/bin/gmake -C gc_cli -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/gc_cli TMPL=gc_cli -w -j3 --jobserver-auth=14,15 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/gc_cli/gc_cli.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/gc_cli/gc_cli.cpp -o gc_cli.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O gc_cli.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -lgencoll_client-static -lgenome_collection-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxconnect-static -lxcompress-static -lxutil-static -lxncbi-static -lz -lbz2 -llzo2 -lz -lm -lpthread -o gc_cli strip gc_cli /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f gc_cli /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin /bin/ln -f gc_cli /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/gc_cli gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/pkg/bin/gmake -C homologene -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/homologene && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh homologene all Platform not defined for NetBSD alpha -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=homologene MODULE_PATH=objects/homologene MODULE_ASN=homologene.asn MODULE_IMPORT='objects/general/general objects/seqalign/seqalign objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/homologene' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/homologene' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/homologene' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/homologene' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/homologene' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/homologene TMPL=homologene -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/homologene' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/homologene TMPL=homologene -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=homologene MODULE_PATH=objects/homologene MODULE_ASN=homologene.asn MODULE_IMPORT='objects/general/general objects/seqalign/seqalign objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/homologene' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/homologene' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/homologene' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/homologene/homologene__.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/homologene/homologene___.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/homologene/homologene__.cpp -o homologene__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/homologene/homologene___.cpp -o homologene___.o /bin/rm -f libhomologene.a .libhomologene.a.stamp ar cr libhomologene.a homologene__.o homologene___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libhomologene.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libhomologene.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libhomologene.a /bin/ln -f .homologene.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.homologene.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/homologene' /usr/pkg/bin/gmake -C mim -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mim && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh mim all Platform not defined for NetBSD alpha -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=mim MODULE_PATH=objects/mim MODULE_ASN=mim.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mim' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mim' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mim' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mim' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mim' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mim TMPL=mim -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mim' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mim TMPL=mim -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=mim MODULE_PATH=objects/mim MODULE_ASN=mim.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mim' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mim' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mim' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mim/mim___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mim/mim__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mim/mim__.cpp -o mim__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mim/mim___.cpp -o mim___.o /bin/rm -f libmim.a .libmim.a.stamp ar cr libmim.a mim__.o mim___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmim.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libmim.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libmim.a /bin/ln -f .mim.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.mim.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mim' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mim' /usr/pkg/bin/gmake -C objprt -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/objprt && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh objprt all Platform not defined for NetBSD alpha -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=objprt MODULE_PATH=objects/objprt MODULE_ASN=objprt.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/objprt' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/objprt' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/objprt' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/objprt' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/objprt' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/objprt TMPL=objprt -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/objprt' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/objprt TMPL=objprt -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=objprt MODULE_PATH=objects/objprt MODULE_ASN=objprt.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/objprt' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/objprt' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/objprt' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/objprt/objprt___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/objprt/objprt__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/objprt/objprt__.cpp -o objprt__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/objprt/objprt___.cpp -o objprt___.o /bin/rm -f libobjprt.a .libobjprt.a.stamp ar cr libobjprt.a objprt__.o objprt___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libobjprt.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libobjprt.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libobjprt.a /bin/ln -f .objprt.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.objprt.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/objprt' /usr/pkg/bin/gmake -C variation -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh variation all Platform not defined for NetBSD alpha -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA \ -oc variation -or objects/variation -odi -od variation.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd variation.dump \ datatool: 2.19.1 gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation TMPL=variation -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation TMPL=variation -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA \ -oc variation -or objects/variation -odi -od variation.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd variation.dump \ datatool: 2.19.1 gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation/variation___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation/variation__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation/variation__.cpp -o variation__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation/variation___.cpp -o variation___.o /bin/rm -f libvariation.a .libvariation.a.stamp ar cr libvariation.a variation__.o variation___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvariation.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libvariation.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libvariation.a /bin/ln -f .variation.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.variation.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation' /usr/pkg/bin/gmake -C macro -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/unit_test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/unit_test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/unit_test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/macro/unit_test/Makefile cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh macro all Platform not defined for NetBSD alpha -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/macro' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro TMPL=macro -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/macro' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro TMPL=macro -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro' In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp:129:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/Replace_func.cpp: In function 'bool ncbi::objects::s_WholeWordReplaceNocase(std::__cxx11::string&, const string&, const string&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/Replace_func.cpp:61:84: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(val, find, 0, string::npos, NStr::eFirst, NStr::eNocase); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistd.hpp:37:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:35, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp:2: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp:129:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/Replace_func.cpp:74:103: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pos = NStr::Find(val, find, pos + repl.length(), string::npos, NStr::eFirst, NStr::eNocase); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistd.hpp:37:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:35, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp:2: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp:129:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/Replace_func.cpp:76:91: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pos = NStr::Find(val, find, pos + 1, string::npos, NStr::eFirst, NStr::eNocase); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistd.hpp:37:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:35, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp:2: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp:129:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/Replace_func.cpp: In function 'bool ncbi::objects::s_ReplaceNocase(std::__cxx11::string&, const string&, const string&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/Replace_func.cpp:88:84: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(val, find, 0, string::npos, NStr::eFirst, NStr::eNocase); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistd.hpp:37:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:35, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp:2: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp:129:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/Replace_func.cpp:99:99: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pos = NStr::Find(val, find, pos + repl.length(), string::npos, NStr::eFirst, NStr::eNocase); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistd.hpp:37:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:35, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp:2: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp:158:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/String_constraint.cpp: In member function 'ncbi::CTempString ncbi::objects::CString_constraint::x_GetConstraintString(ncbi::objects::CString_constraint::ECase) const': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/String_constraint.cpp:479:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/String_constraint.cpp: In member function 'ncbi::CTempString ncbi::objects::CString_constraint::x_GetCompareString(const ncbi::objects::CMatchString&, ncbi::objects::CString_constraint::ECase) const': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/String_constraint.cpp:513:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/macro' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp -o macro__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro___.cpp -o macro___.o /bin/rm -f libmacro.a .libmacro.a.stamp ar cr libmacro.a macro__.o macro___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmacro.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libmacro.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libmacro.a /bin/ln -f .macro.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.macro.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/macro' /usr/pkg/bin/gmake -C unit_test -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/macro/unit_test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/macro' /usr/pkg/bin/gmake -C genesbyloc -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genesbyloc && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh genesbyloc all Platform not defined for NetBSD alpha -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=genesbyloc MODULE_PATH=objects/genesbyloc MODULE_ASN=genesbyloc.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genesbyloc' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genesbyloc' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genesbyloc' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genesbyloc' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genesbyloc' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genesbyloc TMPL=genesbyloc -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genesbyloc' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genesbyloc TMPL=genesbyloc -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=genesbyloc MODULE_PATH=objects/genesbyloc MODULE_ASN=genesbyloc.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genesbyloc' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genesbyloc' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genesbyloc' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genesbyloc/genesbyloc__.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genesbyloc/genesbyloc___.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genesbyloc/genesbyloc__.cpp -o genesbyloc__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genesbyloc/genesbyloc___.cpp -o genesbyloc___.o /bin/rm -f libgenesbyloc.a .libgenesbyloc.a.stamp ar cr libgenesbyloc.a genesbyloc__.o genesbyloc___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenesbyloc.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libgenesbyloc.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libgenesbyloc.a /bin/ln -f .genesbyloc.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.genesbyloc.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genesbyloc' /usr/pkg/bin/gmake -C coords -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/coords && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh objcoords all Platform not defined for NetBSD alpha -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=objcoords MODULE_PATH=objects/coords MODULE_ASN=objcoords.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/coords' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m objcoords.asn -M "" -oA \ -oc objcoords -or objects/coords -odi -od objcoords.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd objcoords.dump \ datatool: 2.19.1 gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/coords' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/coords' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/coords' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/coords' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/coords TMPL=objcoords -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/coords' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/coords TMPL=objcoords -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=objcoords MODULE_PATH=objects/coords MODULE_ASN=objcoords.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/coords' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m objcoords.asn -M "" -oA \ -oc objcoords -or objects/coords -odi -od objcoords.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd objcoords.dump \ datatool: 2.19.1 gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/coords' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/coords' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/coords/objcoords___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/coords/objcoords__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/coords/objcoords__.cpp -o objcoords__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/coords/objcoords___.cpp -o objcoords___.o /bin/rm -f libobjcoords.a .libobjcoords.a.stamp ar cr libobjcoords.a objcoords__.o objcoords___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libobjcoords.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libobjcoords.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libobjcoords.a /bin/ln -f .objcoords.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.objcoords.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/coords' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/coords' /usr/pkg/bin/gmake -C varrep -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/varrep && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh varrep all Platform not defined for NetBSD alpha -- please fix me gmake[4]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=varrep MODULE_PATH=objects/varrep MODULE_ASN=varrep.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/varrep' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m varrep.asn -M "" -oA \ -oc varrep -or objects/varrep -odi -od varrep.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd varrep.dump \ datatool: 2.19.1 gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/varrep' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/varrep' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/varrep' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/varrep' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/varrep TMPL=varrep -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/varrep' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/varrep TMPL=varrep -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -w -j3 --jobserver-auth=12,13 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=varrep MODULE_PATH=objects/varrep MODULE_ASN=varrep.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/varrep' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m varrep.asn -M "" -oA \ -oc varrep -or objects/varrep -odi -od varrep.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd varrep.dump \ datatool: 2.19.1 gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/varrep' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/varrep' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/varrep/varrep___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/varrep/varrep__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/varrep/varrep__.cpp -o varrep__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/varrep/varrep___.cpp -o varrep___.o /bin/rm -f libvarrep.a .libvarrep.a.stamp ar cr libvarrep.a varrep__.o varrep___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvarrep.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libvarrep.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libvarrep.a /bin/ln -f .varrep.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.varrep.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/varrep' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/varrep' /usr/pkg/bin/gmake -C variation_libs -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -C dbsnp -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation_libs' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -C search_by_rsid -w -j3 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh search_by_rsid all Platform not defined for NetBSD alpha -- please fix me gmake[6]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j3 --jobserver-auth=16,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=search_by_rsid MODULE_PATH=objects/variation_libs/dbsnp/search_by_rsid MODULE_ASN=search_by_rsid.asn MODULE_IMPORT='objects/trackmgr/trackmgr objects/general/general' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/trackmgr.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/trackmgr/trackmgr.asn objects/general/general.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m search_by_rsid.asn -M "objects/trackmgr/trackmgr.asn objects/general/general.asn" -oA \ -oc search_by_rsid -or objects/variation_libs/dbsnp/search_by_rsid -odi -od search_by_rsid.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd search_by_rsid.dump \ datatool: 2.19.1 gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid TMPL=search_by_rsid -w -j3 --jobserver-auth=16,17 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid TMPL=search_by_rsid -w -j3 --jobserver-auth=16,17 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -w -j3 --jobserver-auth=16,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=search_by_rsid MODULE_PATH=objects/variation_libs/dbsnp/search_by_rsid MODULE_ASN=search_by_rsid.asn MODULE_IMPORT='objects/trackmgr/trackmgr objects/general/general' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/trackmgr.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/trackmgr/trackmgr.asn objects/general/general.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m search_by_rsid.asn -M "objects/trackmgr/trackmgr.asn objects/general/general.asn" -oA \ -oc search_by_rsid -or objects/variation_libs/dbsnp/search_by_rsid -odi -od search_by_rsid.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd search_by_rsid.dump \ datatool: 2.19.1 gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid__.cpp -o search_by_rsid__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid___.cpp -o search_by_rsid___.o /bin/rm -f libsearchbyrsid.a .libsearchbyrsid.a.stamp ar cr libsearchbyrsid.a search_by_rsid__.o search_by_rsid___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsearchbyrsid.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libsearchbyrsid.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libsearchbyrsid.a /bin/ln -f .searchbyrsid.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.searchbyrsid.dep gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' /usr/pkg/bin/gmake -C tooltip_service -w -j3 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh dbsnp_tooltip_service all Platform not defined for NetBSD alpha -- please fix me gmake[6]: warning: -jN forced in submake: disabling jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -w -j3 --jobserver-auth=16,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=dbsnp_tooltip_service MODULE_PATH=objects/variation_libs/dbsnp/tooltip_service MODULE_ASN=dbsnp_tooltip_service.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m dbsnp_tooltip_service.asn -M "" -oA \ -oc dbsnp_tooltip_service -or objects/variation_libs/dbsnp/tooltip_service -odi -od dbsnp_tooltip_service.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd dbsnp_tooltip_service.dump \ datatool: 2.19.1 gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service TMPL=dbsnp_tooltip_service -w -j3 --jobserver-auth=16,17 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service TMPL=dbsnp_tooltip_service -w -j3 --jobserver-auth=16,17 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -w -j3 --jobserver-auth=16,17 -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=dbsnp_tooltip_service MODULE_PATH=objects/variation_libs/dbsnp/tooltip_service MODULE_ASN=dbsnp_tooltip_service.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m dbsnp_tooltip_service.asn -M "" -oA \ -oc dbsnp_tooltip_service -or objects/variation_libs/dbsnp/tooltip_service -odi -od dbsnp_tooltip_service.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd dbsnp_tooltip_service.dump \ datatool: 2.19.1 gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service__.cpp -o dbsnp_tooltip_service__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service___.cpp -o dbsnp_tooltip_service___.o /bin/rm -f libdbsnp_tooltip_service.a .libdbsnp_tooltip_service.a.stamp ar cr libdbsnp_tooltip_service.a dbsnp_tooltip_service__.o dbsnp_tooltip_service___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbsnp_tooltip_service.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libdbsnp_tooltip_service.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libdbsnp_tooltip_service.a /bin/ln -f .dbsnp_tooltip_service.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.dbsnp_tooltip_service.dep gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation_libs' gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' /usr/pkg/bin/gmake -C objmgr -w -j3 --jobserver-auth=8,9 all_r || exit 5 gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build' gmake[2]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr/test/Makefile gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr' gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr TMPL=objmgr -w -j3 --jobserver-auth=10,11 export-headers gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr' gmake[3]: Nothing to be done for 'export-headers'. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr' gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr' gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr TMPL=objmgr -w -j3 --jobserver-auth=10,11 all gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/seq_id_sort.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/split_parser.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/gc_assembly_parser.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/annot_finder.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/edits_db_saver.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/edits_db_engine.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/unsupp_editsaver.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/edit_saver.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/bioseq_set_edit_commands.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/seq_entry_edit_commands.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/bioseq_edit_commands.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/edit_commands_impl.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/scope_transaction_impl.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/scope_transaction.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/tse_assigner.cpp. Updating dependency information 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-O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/scope_transaction.cpp -o scope_transaction.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/scope_transaction_impl.cpp -o scope_transaction_impl.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/edit_commands_impl.cpp -o edit_commands_impl.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/bioseq_edit_commands.cpp -o bioseq_edit_commands.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/seq_entry_edit_commands.cpp -o seq_entry_edit_commands.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/bioseq_set_edit_commands.cpp -o bioseq_set_edit_commands.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/edit_saver.cpp -o edit_saver.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/unsupp_editsaver.cpp -o unsupp_editsaver.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/edits_db_engine.cpp -o edits_db_engine.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/edits_db_saver.cpp -o edits_db_saver.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/annot_finder.cpp -o annot_finder.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/gc_assembly_parser.cpp -o gc_assembly_parser.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/split_parser.cpp -o split_parser.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/seq_id_sort.cpp -o seq_id_sort.o /bin/rm -f libxobjmgr.a .libxobjmgr.a.stamp ar cr libxobjmgr.a seq_table_setters.o seq_table_info.o seq_annot_info.o table_field.o seq_map_switch.o snp_annot_info.o annot_types_ci.o seq_loc_cvt.o annot_selector.o seq_descr_ci.o feat_ci.o graph_ci.o annot_object.o annot_object_index.o annot_ci.o tse_info.o tse_info_object.o seq_entry_info.o bioseq_base_info.o bioseq_set_info.o bioseq_info.o data_source.o priority.o prefetch_impl.o prefetch_manager.o prefetch_manager_impl.o prefetch_actions.o scope.o heap_scope.o scope_impl.o scope_info.o tse_handle.o seq_map.o seq_map_ci.o seq_entry_ci.o seq_annot_ci.o seq_table_ci.o seq_entry_handle.o bioseq_set_handle.o bioseq_handle.o seq_annot_handle.o align_ci.o data_loader.o handle_range.o objmgr_exception.o handle_range_map.o object_manager.o seq_vector.o seq_vector_ci.o seqdesc_ci.o tse_split_info.o tse_chunk_info.o bioseq_ci.o annot_type_index.o seq_loc_mapper.o seq_align_mapper.o annot_collector.o data_loader_factory.o mapped_feat.o seq_feat_handle.o seq_graph_handle.o seq_align_handle.o tse_assigner.o scope_transaction.o scope_transaction_impl.o edit_commands_impl.o bioseq_edit_commands.o seq_entry_edit_commands.o bioseq_set_edit_commands.o edit_saver.o unsupp_editsaver.o edits_db_engine.o edits_db_saver.o annot_finder.o gc_assembly_parser.o split_parser.o seq_id_sort.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjmgr.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxobjmgr.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxobjmgr.a /bin/ln -f .xobjmgr.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xobjmgr.dep gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr' /usr/pkg/bin/gmake -C test -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr/test' /usr/pkg/bin/gmake -C util -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/unit_test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/unit_test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/unit_test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr/util/unit_test/Makefile gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr/util' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util TMPL=util -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr/util' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util TMPL=util -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/indexer.cpp: In member function 'void ncbi::objects::CBioseqIndex::x_InitFeats()': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/indexer.cpp:1883:20: warning: variable 'sgx' set but not used [-Wunused-but-set-variable] CGapIndex* sgx = NULL; ^~~ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/indexer.cpp:43:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objmgr/util/indexer.hpp: In constructor 'ncbi::objects::CGapIndex::CGapIndex(ncbi::TSeqPos, ncbi::TSeqPos, ncbi::TSeqPos, const string&, const std::vector >&, bool, bool, ncbi::objects::CBioseqIndex&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objmgr/util/indexer.hpp:797:10: warning: 'ncbi::objects::CGapIndex::m_IsAssemblyGap' will be initialized after [-Wreorder] bool m_IsAssemblyGap; ^~~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objmgr/util/indexer.hpp:787:28: warning: 'ncbi::CWeakRef ncbi::objects::CGapIndex::m_Bsx' [-Wreorder] CWeakRef m_Bsx; ^~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/indexer.cpp:2832:1: warning: when initialized here [-Wreorder] CGapIndex::CGapIndex (TSeqPos start, ^~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/indexer.cpp: In function 'int ncbi::objects::SkipMixedContent(const char*)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/indexer.cpp:3345:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < sizeof (mixedTags); i++) { ~~^~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/indexer.cpp: In member function 'void ncbi::objects::CWordPairIndexer::PopulateWordPairIndex(std::__cxx11::string)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/indexer.cpp:3422:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < str.length(); i++) { ~~^~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/create_defline.cpp: In function 'bool x_EndsWithStrain(const ncbi::CTempString&, const ncbi::CTempString&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/create_defline.cpp:1407:80: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::FindNoCase(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence)' is deprecated [-Wdeprecated-declarations] pos = NStr::FindNoCase (taxname, strain, 0, taxname.size() - 1, NStr::eLast); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistd.hpp:37:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/util/strsearch.hpp:45, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objmgr/util/create_defline.hpp:37, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/create_defline.cpp:35: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistr.hpp:2096:22: note: declared here static SIZE_TYPE FindNoCase(const CTempString str, ^~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/create_defline.cpp: In function 'std::__cxx11::string s_RemoveBracketedOrgFromEnd(std::__cxx11::string, std::__cxx11::string)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/create_defline.cpp:2022:61: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] SIZE_TYPE cp = NStr::Find(str, "[", 0, NPOS, NStr::eLast); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistd.hpp:37:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/util/strsearch.hpp:45, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objmgr/util/create_defline.hpp:37, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/create_defline.cpp:35: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/create_defline.cpp: In member function 'void ncbi::objects::sequence::CDeflineGenerator::x_SetTitleFromProteinIdx(const ncbi::objects::CBioseq_Handle&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/create_defline.cpp:2089:38: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (offset > 0 && offset < m_MainTitle.length()) { ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/create_defline.cpp: In member function 'void ncbi::objects::sequence::CDeflineGenerator::x_SetTitleFromProtein(const ncbi::objects::CBioseq_Handle&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/create_defline.cpp:2293:38: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (offset > 0 && offset < m_MainTitle.length()) { ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/create_defline.cpp: In function 'size_t s_TitleEndsInOrganism(std::__cxx11::string&, ncbi::CTempString)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/create_defline.cpp:2920:68: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::FindNoCase(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence)' is deprecated [-Wdeprecated-declarations] pos = NStr::FindNoCase(title, taxname, 0, NPOS, NStr::eLast); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistd.hpp:37:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/util/strsearch.hpp:45, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objmgr/util/create_defline.hpp:37, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/create_defline.cpp:35: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistr.hpp:2096:22: note: declared here static SIZE_TYPE FindNoCase(const CTempString str, ^~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/create_defline.cpp:2921:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (pos == idx + 2) { ~~~~^~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/create_defline.cpp: In member function 'void ncbi::objects::sequence::CDeflineGenerator::x_AdjustProteinTitleSuffixIdx(const ncbi::objects::CBioseq_Handle&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/create_defline.cpp:2976:83: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::FindNoCase(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence)' is deprecated [-Wdeprecated-declarations] pos = NStr::FindNoCase(m_MainTitle, "][", 0, NPOS, NStr::eLast); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistd.hpp:37:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/util/strsearch.hpp:45, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objmgr/util/create_defline.hpp:37, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/create_defline.cpp:35: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistr.hpp:2096:22: note: declared here static SIZE_TYPE FindNoCase(const CTempString str, ^~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/create_defline.cpp: In member function 'void ncbi::objects::sequence::CDeflineGenerator::x_AdjustProteinTitleSuffix(const ncbi::objects::CBioseq_Handle&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/create_defline.cpp:3129:83: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::FindNoCase(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence)' is deprecated [-Wdeprecated-declarations] pos = NStr::FindNoCase(m_MainTitle, "][", 0, NPOS, NStr::eLast); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistd.hpp:37:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/util/strsearch.hpp:45, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objmgr/util/create_defline.hpp:37, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/create_defline.cpp:35: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistr.hpp:2096:22: note: declared here static SIZE_TYPE FindNoCase(const CTempString str, ^~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/create_defline.cpp: In member function 'std::__cxx11::string ncbi::objects::sequence::CDeflineGenerator::GenerateDefline(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::CDeflineGenerator::TUserFlags)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/create_defline.cpp:3556:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < sizeof (s_tpaPrefixList) / sizeof (const char*); i++) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/objutil.cpp: In instantiation of 'bool ncbi::objects::{anonymous}::s_IsTagStart(const _T&, const _T&) [with _T = const char*]': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/objutil.cpp:1808:81: required from here /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/objutil.cpp:1736:57: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int possible_str_idx = 0; possible_str_idx < num_possible_tag_starts; ++possible_str_idx) { ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/objutil.cpp:1098:13: warning: 'bool ncbi::objects::s_IsValidAccession(const string&)' defined but not used [-Wunused-function] static bool s_IsValidAccession(const string& acc) ^~~~~~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/autodef.cpp: In member function 'ncbi::objects::CAutoDefModifierCombo* ncbi::objects::CAutoDef::FindBestModifierCombo()': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/autodef.cpp:201:28: warning: unused variable 'best' [-Wunused-variable] CAutoDefModifierCombo *best = NULL; ^~~~ gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr/util' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/autodef_options.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/autodef_feature_clause.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/autodef_source_group.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/autodef_mod_combo.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/autodef_available_modifier.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/autodef_source_desc.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/autodef.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/feature_edit.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/objutil.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/seq_trimmer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/seq_align_util.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/seq_loc_util.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/obj_sniff.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/create_defline.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/seqtitle.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/indexer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/feature.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/sequence.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/weight.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/weight.cpp -o weight.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/sequence.cpp -o sequence.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/feature.cpp -o feature.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/indexer.cpp -o indexer.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/seqtitle.cpp -o seqtitle.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/create_defline.cpp -o create_defline.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/obj_sniff.cpp -o obj_sniff.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/seq_loc_util.cpp -o seq_loc_util.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/seq_align_util.cpp -o seq_align_util.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/seq_trimmer.cpp -o seq_trimmer.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp -o bioseqgaps_ci.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/objutil.cpp -o objutil.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/feature_edit.cpp -o feature_edit.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/autodef.cpp -o autodef.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp -o autodef_feature_clause_base.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/autodef_source_desc.cpp -o autodef_source_desc.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/autodef_available_modifier.cpp -o autodef_available_modifier.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/autodef_mod_combo.cpp -o autodef_mod_combo.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/autodef_source_group.cpp -o autodef_source_group.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr//tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/autodef_feature_clause.cpp: In member function 'bool ncbi::objects::CAutoDefFeatureClause::x_GetExonDescription(std::__cxx11::string&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/autodef_feature_clause.cpp:738:28: warning: unused variable 'subtype' [-Wunused-variable] CSeqFeatData::ESubtype subtype = m_MainFeat.GetData().GetSubtype(); ^~~~~~~ include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/autodef_feature_clause.cpp -o autodef_feature_clause.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/autodef_options.cpp -o autodef_options.o /bin/rm -f libxobjutil.a .libxobjutil.a.stamp ar cr libxobjutil.a weight.o sequence.o feature.o indexer.o seqtitle.o create_defline.o obj_sniff.o seq_loc_util.o seq_align_util.o seq_trimmer.o bioseqgaps_ci.o objutil.o feature_edit.o autodef.o autodef_feature_clause_base.o autodef_source_desc.o autodef_available_modifier.o autodef_mod_combo.o autodef_source_group.o autodef_feature_clause.o autodef_options.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjutil.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxobjutil.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxobjutil.a /bin/ln -f .xobjutil.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xobjutil.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr/util' /usr/pkg/bin/gmake -C unit_test -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr/util/unit_test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr/util' /usr/pkg/bin/gmake -C split -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr/split' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/split TMPL=id2_split -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr/split' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/split TMPL=id2_split -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr/split' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/split/split_exceptions.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/split/size.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/split/chunk_info.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/split/annot_piece.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/split/asn_sizer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/split/object_splitinfo.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/split/id_range.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/split/blob_splitter_maker.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/split/blob_splitter_parser.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/split/blob_splitter_impl.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/split/split_blob.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/split/blob_splitter_params.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/split/blob_splitter.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/split/blob_splitter.cpp -o blob_splitter.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/split/blob_splitter_params.cpp -o blob_splitter_params.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/split/split_blob.cpp -o split_blob.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include 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/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/split/split_exceptions.cpp -o split_exceptions.o /bin/rm -f libid2_split.a .libid2_split.a.stamp ar cr libid2_split.a blob_splitter.o blob_splitter_params.o split_blob.o blob_splitter_impl.o blob_splitter_parser.o blob_splitter_maker.o id_range.o object_splitinfo.o asn_sizer.o annot_piece.o chunk_info.o size.o split_exceptions.o /bin/sh 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/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/unit_test_util/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/cddalignview/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT manip/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT validator/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/test/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT asniotest/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/manip/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT align/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/asniotest/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/validator/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT eutils/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT snputil/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/align/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT uudutil/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/snputil/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/eutils/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT variation/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/uudutil/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT writers/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT pubseq_gateway/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/variation/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/writers/Makefile /usr/pkg/bin/gmake -C logging -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/logging' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/logging TMPL=logging -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/logging' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/logging TMPL=logging -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/logging' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/logging/listener.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/logging/message.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/logging/message.cpp -o message.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/logging/listener.cpp -o listener.o /bin/rm -f libxlogging.a .libxlogging.a.stamp ar cr libxlogging.a message.o listener.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxlogging.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxlogging.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxlogging.a /bin/ln -f .xlogging.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xlogging.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/logging' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/logging' /usr/pkg/bin/gmake -C unit_test_util -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/unit_test_util' /usr/pkg/bin/gmake -C readers -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/app/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/unit_test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/test/Makefile.in test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/app/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/app/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT app/Makefile test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/unit_test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/unit_test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT test/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/readers/test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/readers/app/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/readers/unit_test/Makefile gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/readers' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers TMPL=xobjread -w -j3 --jobserver-auth=14,15 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/readers' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers TMPL=xobjreadex -w -j3 --jobserver-auth=14,15 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/readers' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers TMPL=xobjread -w -j3 --jobserver-auth=14,15 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/agp_read.cpp: In function 'ncbi::CRef ncbi::AgpRead(ncbi::CNcbiIstream&, ncbi::EAgpRead_IdRule, bool, std::vector >*)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/agp_read.cpp:58:74: warning: 'void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)' is deprecated [-Wdeprecated-declarations] AgpRead(is, entries, component_id_rule, set_gap_data, component_types); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/agp_read.cpp:33:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/readers/agp_read.hpp:61:6: note: declared here void AgpRead(CNcbiIstream& is, ^~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/agp_read.cpp: In function 'void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/agp_read.cpp:74:74: warning: 'void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)' is deprecated [-Wdeprecated-declarations] AgpRead(is, bioseqs, component_id_rule, set_gap_data, component_types); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/agp_read.cpp:33:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/readers/agp_read.hpp:52:6: note: declared here void AgpRead(CNcbiIstream& is, ^~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/aln_reader.cpp: In member function 'bool ncbi::CAlnReader::x_IsGap(ncbi::CAlnReader::TNumrow, ncbi::TSeqPos, const string&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/aln_reader.cpp:409:13: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (row > m_MiddleSections.size()) { ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/bed_reader.cpp: In member function 'virtual bool ncbi::objects::CBedReader::xDetermineLikelyColumnCount(ncbi::objects::CLinePreBuffer&, ncbi::objects::ILineErrorListener*)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/bed_reader.cpp:472:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (blockSizes.size() != blockCount) { ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/bed_reader.cpp:493:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (blockStarts.size() != blockCount) { ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/bed_reader.cpp: In member function 'bool ncbi::objects::CBedReader::xParseFeature(const string&, ncbi::CRef&, ncbi::objects::ILineErrorListener*)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/bed_reader.cpp:598:14: warning: variable 'record_copy' set but not used [-Wunused-but-set-variable] CTempString record_copy = NStr::TruncateSpaces_Unsafe(line); ^~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp: In constructor 'ncbi::objects::CFastaReader::CFastaReader(ncbi::ILineReader&, ncbi::objects::CFastaReader::TFlags, ncbi::objects::CFastaReader::FIdCheck)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:225:27: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] m_fIdCheck(f_idcheck) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/readers/fasta.hpp:381:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:225:27: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] m_fIdCheck(f_idcheck) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/readers/fasta.hpp:381:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:225:27: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] m_fIdCheck(f_idcheck) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/readers/fasta.hpp:381:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:225:27: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] m_fIdCheck(f_idcheck) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/readers/fasta.hpp:381:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:225:27: warning: 'ncbi::objects::CFastaReader::m_ExpectedEnd' is deprecated [-Wdeprecated-declarations] m_fIdCheck(f_idcheck) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/readers/fasta.hpp:386:29: note: declared here NCBI_DEPRECATED TSeqPos m_ExpectedEnd; ^~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:225:27: warning: 'ncbi::objects::CFastaReader::m_ExpectedEnd' is deprecated [-Wdeprecated-declarations] m_fIdCheck(f_idcheck) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/readers/fasta.hpp:386:29: note: declared here NCBI_DEPRECATED TSeqPos m_ExpectedEnd; ^~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp: In constructor 'ncbi::objects::CFastaReader::CFastaReader(ncbi::objects::CReaderBase::TReaderFlags, ncbi::objects::CFastaReader::TFlags, ncbi::objects::CFastaReader::FIdCheck)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:242:27: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] m_fIdCheck(f_idcheck) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/readers/fasta.hpp:381:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:242:27: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] m_fIdCheck(f_idcheck) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/readers/fasta.hpp:381:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:242:27: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] m_fIdCheck(f_idcheck) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/readers/fasta.hpp:381:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:242:27: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] m_fIdCheck(f_idcheck) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/readers/fasta.hpp:381:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:242:27: warning: 'ncbi::objects::CFastaReader::m_ExpectedEnd' is deprecated [-Wdeprecated-declarations] m_fIdCheck(f_idcheck) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/readers/fasta.hpp:386:29: note: declared here NCBI_DEPRECATED TSeqPos m_ExpectedEnd; ^~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:242:27: warning: 'ncbi::objects::CFastaReader::m_ExpectedEnd' is deprecated [-Wdeprecated-declarations] m_fIdCheck(f_idcheck) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/readers/fasta.hpp:386:29: note: declared here NCBI_DEPRECATED TSeqPos m_ExpectedEnd; ^~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp: In destructor 'virtual ncbi::objects::CFastaReader::~CFastaReader()': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:248:33: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] CFastaReader::~CFastaReader(void) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/readers/fasta.hpp:381:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:248:33: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] CFastaReader::~CFastaReader(void) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/readers/fasta.hpp:381:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp: In member function 'virtual void ncbi::objects::CFastaReader::ParseDefLine(const TStr&, ncbi::objects::ILineErrorListener*)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:614:9: warning: 'ncbi::objects::CFastaReader::m_ExpectedEnd' is deprecated [-Wdeprecated-declarations] m_ExpectedEnd = data.range_end - data.range_start; ^~~~~~~~~~~~~ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/readers/fasta.hpp:386:29: note: declared here NCBI_DEPRECATED TSeqPos m_ExpectedEnd; ^~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:614:9: warning: 'ncbi::objects::CFastaReader::m_ExpectedEnd' is deprecated [-Wdeprecated-declarations] m_ExpectedEnd = data.range_end - data.range_start; ^~~~~~~~~~~~~ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/readers/fasta.hpp:386:29: note: declared here NCBI_DEPRECATED TSeqPos m_ExpectedEnd; ^~~~~~~~~~~~~ gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/readers' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/line_error.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/message_listener.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/struct_cmt_reader.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/ucscregion_reader.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/agp_converter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta_exception.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/source_mod_parser.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/best_feat_finder.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/vcf_reader.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/gvf_reader.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/gff2_reader.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/gff2_data.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/gtf_reader.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/gff3_reader.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/gff3_sofa.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/wiggle_reader.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/rm_reader.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/readfeat.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/reader_base.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/phrap.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/microarray_reader.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/reader_data.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/track_data.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/gff_reader.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/getfeature.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta_reader_utils.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta_aln_builder.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/cigar.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/bed_reader.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/aln_reader.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/agp_validate_reader.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/agp_util.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/agp_seq_entry.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/agp_read.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/acc_pattern.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/format_guess_ex.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/read_util.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/read_util.cpp -o read_util.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/format_guess_ex.cpp -o format_guess_ex.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/acc_pattern.cpp -o acc_pattern.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/agp_read.cpp -o agp_read.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/agp_seq_entry.cpp -o agp_seq_entry.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/agp_util.cpp -o agp_util.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/agp_validate_reader.cpp -o agp_validate_reader.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/aln_reader.cpp -o aln_reader.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/bed_reader.cpp -o bed_reader.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/cigar.cpp -o cigar.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp -o fasta.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta_aln_builder.cpp -o fasta_aln_builder.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta_reader_utils.cpp -o fasta_reader_utils.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/getfeature.cpp -o getfeature.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/gff_reader.cpp -o gff_reader.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/includ/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/readfeat.cpp: In member function 'void ncbi::objects::CFeatureTableReader_Imp::x_InitId(const string&, ncbi::objects::CFeatureTableReader_Imp::TFlags)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/readfeat.cpp:3382:46: warning: enum constant in boolean context [-Wint-in-bool-context] (flags && CFeature_table_reader::fAllIdsAsLocal) ? CSeq_id::fParse_AnyLocal:CSeq_id::fParse_Default); ^~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/rm_reader.cpp: In member function 'ncbi::CRef ncbi::objects::CRepeatToFeat::operator()(const ncbi::objects::IRepeatRegion&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/rm_reader.cpp:551:44: warning: enum constant in boolean context [-Wint-in-bool-context] if (fRemoveRedundancy && m_Library && ^~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/gff3_reader.cpp: In member function 'virtual bool ncbi::objects::CGff3Reader::xUpdateAnnotGeneric(const ncbi::objects::CGff2Record&, ncbi::CRef, ncbi::CRef, ncbi::objects::ILineErrorListener*)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/gff3_reader.cpp:599:10: warning: unused variable 'st' [-Wunused-variable] auto st = pFeature->GetData().GetSubtype(); ^~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/gtf_reader.cpp: In member function 'virtual bool ncbi::objects::CGtfReader::x_UpdateAnnotCds(const ncbi::objects::CGff2Record&, ncbi::CRef)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/gtf_reader.cpp:269:10: warning: unused variable 'needXref' [-Wunused-variable] bool needXref = false; ^~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/gff2_reader.cpp: In member function 'bool ncbi::objects::CGff2Reader::xGetStartsOnPlusStrand(ncbi::TSeqPos, const std::vector >&, bool, std::vector&) const': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/gff2_reader.cpp:1261:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (auto i=0; i >&, ncbi::objects::ENa_strand, ncbi::objects::ENa_strand, ncbi::TSeqPos, ncbi::TSeqPos, const ncbi::objects::CGff2Record&, ncbi::objects::CSeq_align_Base::C_Segs::TDenseg&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/gff2_reader.cpp:1348:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (auto i=0; i)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/gff2_reader.cpp:1435:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (auto i=0; i, std::__cxx11::basic_string > >&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/source_mod_parser.cpp:879:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i=0; i&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/source_mod_parser.cpp:915:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (auto i=0; i >&, std::vector >&, std::vector&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:1001:9: warning: variable 'found_short' set but not used [-Wunused-but-set-variable] int found_short(-1); ^~~~~~~~~~~ gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqidlist_reader.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdblmdbset.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdb.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdb.cpp -o seqdb.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp -o seqdbbitset.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp -o seqdbfilter.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp -o seqdbatlas.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp -o seqdbalias.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp -o seqdbcommon.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp -o seqdbfile.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp -o seqdbimpl.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp -o seqdbvol.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp -o seqdbvolset.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp -o seqdboidlist.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp -o seqdbisam.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp -o seqdbtax.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp -o seqdbgilistset.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp -o seqdbexpert.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp -o seqdbblob.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp -o seqdbcol.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp -o seqdbgimask.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp -o seqdbobj.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp -o seqdb_lmdb.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdblmdbset.cpp -o seqdblmdbset.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqidlist_reader.cpp -o seqidlist_reader.o /bin/rm -f libseqdb.a .libseqdb.a.stamp ar cr libseqdb.a seqdb.o seqdbbitset.o seqdbfilter.o seqdbatlas.o seqdbalias.o seqdbcommon.o seqdbfile.o seqdbimpl.o seqdbvol.o seqdbvolset.o seqdboidlist.o seqdbisam.o seqdbtax.o seqdbgilistset.o seqdbexpert.o seqdbblob.o seqdbcol.o seqdbgimask.o seqdbobj.o seqdb_lmdb.o seqdblmdbset.o seqidlist_reader.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqdb.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqdb.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libseqdb.a /bin/ln -f .seqdb.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.seqdb.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /usr/pkg/bin/gmake -C demo -w -j3 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/demo TMPL=seqdb_demo -w -j3 --jobserver-auth=16,17 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp -o seqdb_demo.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O seqdb_demo.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -lseqdb-static -lxobjutil-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -llmdb -lpthread -lz -lbz2 -llzo2 -lz -lm -lpthread -o seqdb_demo strip seqdb_demo /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_demo /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin /bin/ln -f seqdb_demo /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/seqdb_demo gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' /usr/pkg/bin/gmake -C test -w -j3 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/test TMPL=seqdb_perf -w -j3 --jobserver-auth=16,17 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp: In member function 'int CSeqDBPerfApp::x_ScanDatabase()': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:148:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (ssize_t i = 0; i < oids2iterate.size(); i++) { ~~^~~~~~~~~~~~~~~~~~~~~ gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp -o seqdb_perf.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O seqdb_perf.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -lseqdb-static -lxobjutil-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -llzo2 -lz -llmdb -lpthread -lm -lpthread -o seqdb_perf strip seqdb_perf /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_perf /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin /bin/ln -f seqdb_perf /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/seqdb_perf gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /usr/pkg/bin/gmake -C seqdb_writer -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer TMPL=writedb -w -j3 --jobserver-auth=14,15 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer TMPL=writedb -w -j3 --jobserver-auth=14,15 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/seqidlist_writer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/criteria.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/writedb.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/writedb.cpp -o writedb.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp -o writedb_impl.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp -o writedb_volume.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp -o writedb_files.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp -o writedb_isam.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp -o writedb_gimask.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp -o writedb_convert.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp -o writedb_general.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp -o writedb_column.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp -o mask_info_registry.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp -o taxid_set.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp -o build_db.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp -o multisource_util.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/criteria.cpp -o criteria.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp -o writedb_lmdb.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/seqidlist_writer.cpp -o seqidlist_writer.o /bin/rm -f libwritedb.a .libwritedb.a.stamp ar cr libwritedb.a writedb.o writedb_impl.o writedb_volume.o writedb_files.o writedb_isam.o writedb_gimask.o writedb_convert.o writedb_general.o writedb_column.o mask_info_registry.o taxid_set.o build_db.o multisource_util.o criteria.o writedb_lmdb.o seqidlist_writer.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libwritedb.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libwritedb.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libwritedb.a /bin/ln -f .writedb.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.writedb.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /usr/pkg/bin/gmake -C unit_test -w -j3 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /usr/pkg/bin/gmake -C gene_info_reader -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -w -j3 --jobserver-auth=14,15 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -w -j3 --jobserver-auth=14,15 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/gene_info_reader/file_utils.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/gene_info_reader/gene_info.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/gene_info_reader/gene_info.cpp -o gene_info.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp -o gene_info_reader.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/gene_info_reader/file_utils.cpp -o file_utils.o /bin/rm -f libgene_info.a .libgene_info.a.stamp ar cr libgene_info.a gene_info.o gene_info_reader.o file_utils.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgene_info.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libgene_info.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libgene_info.a /bin/ln -f .gene_info.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.gene_info.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /usr/pkg/bin/gmake -C demo -w -j3 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/gene_info_reader/demo TMPL=gene_info_reader -w -j3 --jobserver-auth=16,17 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp -o gene_info_reader_app.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O gene_info_reader_app.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -lgene_info-static -lxobjutil-static -lseqdb-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -llzo2 -lz -llmdb -lpthread -lm -lpthread -o gene_info_reader strip gene_info_reader /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f gene_info_reader /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin /bin/ln -f gene_info_reader /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/gene_info_reader gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' /usr/pkg/bin/gmake -C unit_test -w -j3 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /usr/pkg/bin/gmake -C gene_info_writer -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_writer' /usr/pkg/bin/gmake -C services -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/services' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/services TMPL=blast_services -w -j3 --jobserver-auth=14,15 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/services' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/services TMPL=blast_services -w -j3 --jobserver-auth=14,15 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/services' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/services/blast_services.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/services/blast_services.cpp -o blast_services.o /bin/rm -f libblast_services.a .libblast_services.a.stamp ar cr libblast_services.a blast_services.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_services.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libblast_services.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libblast_services.a /bin/ln -f .blast_services.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.blast_services.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/services' /usr/pkg/bin/gmake -C unit_test -w -j3 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/services' /usr/pkg/bin/gmake -C blastdb_format -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -w -j3 --jobserver-auth=14,15 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -w -j3 --jobserver-auth=14,15 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:69: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] CSeqFormatterConfig config = CSeqFormatterConfig()); ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^~~~~~~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:96:85: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] void DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config = CSeqFormatterConfig()); ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^~~~~~~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:68: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] CSeqFormatterConfig config = CSeqFormatterConfig()); ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^~~~~~~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:96:84: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] void DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config = CSeqFormatterConfig()); ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^~~~~~~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:49:74: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] CSeqFormatterConfig config /* = CSeqFormatterConfig() */) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^~~~~~~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:270:72: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] void CSeqFormatter::DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^~~~~~~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp: In member function 'std::__cxx11::string ncbi::CBlastDBExtractor::ExtractLeafTaxIds()': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:396:24: warning: variable 'taxids_iter' set but not used [-Wunused-but-set-variable] set::iterator taxids_iter = taxids.begin(); ^~~~~~~~~~~ gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp -o seq_writer.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp -o blastdb_dataextract.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp -o blastdb_formatter.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp -o seq_formatter.o /bin/rm -f libblastdb_format.a .libblastdb_format.a.stamp ar cr libblastdb_format.a seq_writer.o blastdb_dataextract.o blastdb_formatter.o seq_formatter.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb_format.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libblastdb_format.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libblastdb_format.a /bin/ln -f .blastdb_format.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.blastdb_format.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /usr/pkg/bin/gmake -C unit_test -w -j3 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast' /usr/pkg/bin/gmake -C lds2 -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/lds2' /usr/pkg/bin/gmake -C data_loaders -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/lds2/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/patcher/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/asn_cache/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/lds2/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/lds2/Makefile.in test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/patcher/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/patcher/Makefile.in test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/asn_cache/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/asn_cache/Makefile.in /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/cdd/Makefile.in` /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT lds2/Makefile test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/cdd/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/cdd/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT patcher/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT asn_cache/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/patcher/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/lds2/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT cdd/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/asn_cache/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/cdd/Makefile /usr/pkg/bin/gmake -C genbank -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/pubseq/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/pubseq2/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/pubseq/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/pubseq/Makefile.in test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/pubseq2/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/pubseq2/Makefile.in test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT pubseq/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT pubseq2/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq2/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq/Makefile gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -w -j3 --jobserver-auth=16,17 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -w -j3 --jobserver-auth=16,17 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -w -j3 --jobserver-auth=16,17 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/incr_time.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/reader_service.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/request_result.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/blob_id.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/seqref.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/reader_snp.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/processors.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/writer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/reader.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp -o dispatcher.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/reader.cpp -o reader.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/writer.cpp -o writer.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/processors.cpp -o processors.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/reader_snp.cpp -o reader_snp.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/seqref.cpp -o seqref.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/blob_id.cpp -o blob_id.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/request_result.cpp -o request_result.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp -o reader_id1_base.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp -o reader_id2_base.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/reader_service.cpp -o reader_service.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/incr_time.cpp -o incr_time.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp -o info_cache.o /bin/rm -f libncbi_xreader.a .libncbi_xreader.a.stamp /bin/rm -f libncbi_xreader-dll.so .libncbi_xreader-dll.so.stamp /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -shared -o libncbi_xreader-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O -fPIC dispatcher.o reader.o writer.o processors.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxcompress -lz -lbz2 -llzo2 -lz -lm -lpthread ar cr libncbi_xreader.a dispatcher.o reader.o writer.o processors.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libncbi_xreader.a /bin/ln -f .ncbi_xreader.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.ncbi_xreader.dep /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libncbi_xreader-dll.so /bin/ln -f .ncbi_xreader-dll.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.ncbi_xreader-dll.dep gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -w -j3 --jobserver-auth=16,17 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/gbload_util.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp -o gbloader.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/gbload_util.cpp -o gbload_util.o /bin/rm -f libncbi_xloader_genbank.a .libncbi_xloader_genbank.a.stamp /bin/rm -f libncbi_xloader_genbank-dll.so .libncbi_xloader_genbank-dll.so.stamp ar cr libncbi_xloader_genbank.a gbloader.o gbload_util.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -shared -o libncbi_xloader_genbank-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O -fPIC gbloader.o gbload_util.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -lm -lpthread /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_genbank.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.a /bin/ln -f .ncbi_xloader_genbank.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.ncbi_xloader_genbank.dep /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_genbank-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank-dll.so /bin/ln -f .ncbi_xloader_genbank-dll.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.ncbi_xloader_genbank-dll.dep gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /usr/pkg/bin/gmake -C cache -w -j3 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -w -j3 --jobserver-auth=16,17 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -w -j3 --jobserver-auth=16,17 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp -o reader_cache.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp -o writer_cache.o /bin/rm -f libncbi_xreader_cache.a .libncbi_xreader_cache.a.stamp /bin/rm -f libncbi_xreader_cache-dll.so .libncbi_xreader_cache-dll.so.stamp /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -shared -o libncbi_xreader_cache-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O -fPIC reader_cache.o writer_cache.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -lm -lpthread ar cr libncbi_xreader_cache.a reader_cache.o writer_cache.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_cache.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libncbi_xreader_cache.a /bin/ln -f .ncbi_xreader_cache.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.ncbi_xreader_cache.dep /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_cache-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libncbi_xreader_cache-dll.so /bin/ln -f .ncbi_xreader_cache-dll.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.ncbi_xreader_cache-dll.dep gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' /usr/pkg/bin/gmake -C pubseq -w -j3 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq' /usr/pkg/bin/gmake -C id2 -w -j3 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -w -j3 --jobserver-auth=16,17 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -w -j3 --jobserver-auth=16,17 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp -o reader_id2.o /bin/rm -f libncbi_xreader_id2.a .libncbi_xreader_id2.a.stamp /bin/rm -f libncbi_xreader_id2-dll.so .libncbi_xreader_id2-dll.so.stamp ar cr libncbi_xreader_id2.a reader_id2.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -shared -o libncbi_xreader_id2-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O -fPIC reader_id2.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -lm -lpthread /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_id2.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id2.a /bin/ln -f .ncbi_xreader_id2.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.ncbi_xreader_id2.dep /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_id2-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id2-dll.so /bin/ln -f .ncbi_xreader_id2-dll.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.ncbi_xreader_id2-dll.dep gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' /usr/pkg/bin/gmake -C id1 -w -j3 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -w -j3 --jobserver-auth=16,17 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -w -j3 --jobserver-auth=16,17 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp -o reader_id1.o /bin/rm -f libncbi_xreader_id1.a .libncbi_xreader_id1.a.stamp /bin/rm -f libncbi_xreader_id1-dll.so .libncbi_xreader_id1-dll.so.stamp ar cr libncbi_xreader_id1.a reader_id1.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -shared -o libncbi_xreader_id1-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O -fPIC reader_id1.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxcompress -lm -lpthread /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_id1.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.a /bin/ln -f .ncbi_xreader_id1.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.ncbi_xreader_id1.dep /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_id1-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1-dll.so /bin/ln -f .ncbi_xreader_id1-dll.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.ncbi_xreader_id1-dll.dep gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' /usr/pkg/bin/gmake -C pubseq2 -w -j3 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq2' /usr/pkg/bin/gmake -C gicache -w -j3 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/gicache TMPL=ncbi_xreader_gicache -w -j3 --jobserver-auth=16,17 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/gicache TMPL=ncbi_xreader_gicache -w -j3 --jobserver-auth=16,17 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c: In function 'x_DataToGiData': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:289:7: warning: unused variable 'logmsg' [-Wunused-variable] char logmsg[256]; ^~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c: In function 'GICache_LoadAdd': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:635:9: warning: unused variable 'acc_len' [-Wunused-variable] int acc_len; ^~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c: In function 'GICache_SetMeta': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:833:18: warning: unused variable 'stime' [-Wunused-variable] char meta[512], stime[128]; ^~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:833:7: warning: unused variable 'meta' [-Wunused-variable] char meta[512], stime[128]; ^~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c: In function 'GICache_GetAccFreqTab': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:984:11: warning: unused variable 'gi_len' [-Wunused-variable] int64_t gi_len = 0; ^~~~~~ In file included from /usr/include/stdio.h:597:0, from /usr/include/wchar.h:67, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbi_limits.h:64, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/gicache/ncbi_toolkit.h:1, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.h:4, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:46: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c: In function 'GiDataIndex_New': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:205:37: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 223 [-Wformat-truncation=] snprintf(logmsg, sizeof(logmsg), "GI_CACHE: failed to access file (%s): %s\n", data_index->m_FileName, strerror(rc)); ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:205:4: note: '__builtin_snprintf' output 38 or more bytes (assuming 1061) into a destination of size 256 snprintf(logmsg, sizeof(logmsg), "GI_CACHE: failed to access file (%s): %s\n", data_index->m_FileName, strerror(rc)); ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:240:36: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 222 [-Wformat-truncation=] snprintf(logmsg, sizeof(logmsg), "GI_CACHE: failed to open LMDB db (%s): %s\n", data_index->m_FileName, mdb_strerror(rc)); ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:240:3: note: '__builtin_snprintf' output 39 or more bytes (assuming 1062) into a destination of size 256 snprintf(logmsg, sizeof(logmsg), "GI_CACHE: failed to open LMDB db (%s): %s\n", data_index->m_FileName, mdb_strerror(rc)); ^ gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/gicache/reader_gicache.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/gicache -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/gicache/reader_gicache.cpp -o reader_gicache.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/gicache -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c -o gicache.o /bin/rm -f libncbi_xreader_gicache.a .libncbi_xreader_gicache.a.stamp /bin/rm -f libncbi_xreader_gicache-dll.so .libncbi_xreader_gicache-dll.so.stamp ar cr libncbi_xreader_gicache.a reader_gicache.o gicache.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -shared -o libncbi_xreader_gicache-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O -fPIC reader_gicache.o gicache.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -llmdb -lpthread /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_gicache.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_gicache.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libncbi_xreader_gicache.a /bin/ln -f .ncbi_xreader_gicache.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.ncbi_xreader_gicache.dep /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_gicache-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_gicache-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libncbi_xreader_gicache-dll.so /bin/ln -f .ncbi_xreader_gicache-dll.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.ncbi_xreader_gicache-dll.dep gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' /usr/pkg/bin/gmake -C test -w -j3 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /usr/pkg/bin/gmake -C lds2 -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/lds2' /usr/pkg/bin/gmake -C blastdb -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb/unit_test/Makefile gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -w -j3 --jobserver-auth=16,17 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -w -j3 --jobserver-auth=16,17 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -w -j3 --jobserver-auth=16,17 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp -o bdbloader.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp -o cached_sequence.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp -o local_blastdb_adapter.o /bin/rm -f libncbi_xloader_blastdb.a .libncbi_xloader_blastdb.a.stamp ar cr libncbi_xloader_blastdb.a bdbloader.o cached_sequence.o local_blastdb_adapter.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_blastdb.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libncbi_xloader_blastdb.a /bin/ln -f .ncbi_xloader_blastdb.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.ncbi_xloader_blastdb.dep gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -w -j3 --jobserver-auth=16,17 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp -o bdbloader_rmt.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp -o remote_blastdb_adapter.o /bin/rm -f libncbi_xloader_blastdb_rmt.a .libncbi_xloader_blastdb_rmt.a.stamp ar cr libncbi_xloader_blastdb_rmt.a bdbloader_rmt.o remote_blastdb_adapter.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb_rmt.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_blastdb_rmt.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libncbi_xloader_blastdb_rmt.a /bin/ln -f .ncbi_xloader_blastdb_rmt.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.ncbi_xloader_blastdb_rmt.dep gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /usr/pkg/bin/gmake -C unit_test -w -j3 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb/unit_test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /usr/pkg/bin/gmake -C patcher -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/patcher' /usr/pkg/bin/gmake -C asn_cache -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/asn_cache' /usr/pkg/bin/gmake -C cdd -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/cdd' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders' /usr/pkg/bin/gmake -C simple -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/simple' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/simple TMPL=xobjsimple -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/simple' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/simple TMPL=xobjsimple -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/simple' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/simple/simple_om.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/simple/simple_om.cpp -o simple_om.o /bin/rm -f libxobjsimple.a .libxobjsimple.a.stamp ar cr libxobjsimple.a simple_om.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjsimple.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxobjsimple.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxobjsimple.a /bin/ln -f .xobjsimple.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xobjsimple.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/simple' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/simple' /usr/pkg/bin/gmake -C alnmgr -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/demo/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/unit_test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/demo/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/demo/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT demo/Makefile test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/unit_test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/unit_test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/alnmgr/unit_test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/alnmgr/demo/Makefile gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/alnmgr' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr TMPL=alnmgr -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/alnmgr' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr TMPL=alnmgr -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/aln_generators.cpp: In function 'void ncbi::InitSplicedsegFromPairwiseAln(ncbi::objects::CSpliced_seg&, const ncbi::CPairwiseAln&, ncbi::objects::CScope*)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/aln_generators.cpp:538:44: warning: typedef 'TAlnRngColl' locally defined but not used [-Wunused-local-typedefs] typedef CAlignRangeCollection TAlnRngColl; ^~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnmap.cpp: In member function 'ncbi::CRef ncbi::objects::CAlnMap::CreateAlignFromRange(const std::vector&, ncbi::TSignedSeqPos, ncbi::TSignedSeqPos, ncbi::objects::CAlnMap::ESegmentTrimFlag)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnmap.cpp:1472:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (TNumrow row = 0; row < selected_rows.size(); row++) { ~~~~^~~~~~~~~~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp: In static member function 'static bool ncbi::objects::CAlnMixMatches::x_CompareChainScores(const ncbi::CRef&, const ncbi::CRef&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:76:55: warning: suggest parentheses around '&&' within '||' [-Wparentheses] match1->m_ChainScore == match2->m_ChainScore && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ match1->m_Score > match2->m_Score || ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp: In member function 'void ncbi::objects::CAlnMixMatches::Add(const ncbi::objects::CDense_seg&, ncbi::objects::CAlnMixMatches::TAddFlags)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:192:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] (aln_seq1->m_StrandScore > 0 && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ strand1 == eNa_strand_minus || ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:196:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] aln_seq2->m_StrandScore > 0 && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ strand2 == eNa_strand_minus || ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:198:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] aln_seq2->m_StrandScore < 0 && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ strand2 != eNa_strand_minus)) { ~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/alnmgr/alnmerger.hpp:42:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp:36: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ seq1->m_ChildIdx < seq2->m_ChildIdx; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp: In member function 'void ncbi::objects::CAlnMixMerger::x_Merge()': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp:140:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (m_AlnMixMatches->m_ContainsNA && m_AlnMixMatches->m_ContainsAA || ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp: In member function 'void ncbi::objects::CAlnMixMerger::x_CreateDenseg()': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp:1210:44: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (start_its_i->second->first != -1) { ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp:1232:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (m_AlnMixMatches->m_ContainsNA && m_AlnMixMatches->m_ContainsAA || ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/alnmgr/alnmerger.hpp:42:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnmix.cpp:38: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ seq1->m_ChildIdx < seq2->m_ChildIdx; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp: In member function 'void ncbi::objects::CAlnMixMerger::x_Merge()': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp:752:44: warning: 'width2' may be used uninitialized in this function [-Wmaybe-uninitialized] while(start < start2 + len * width2) { ~~~~^~~~~~~~ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnseq.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ seq1->m_ChildIdx < seq2->m_ChildIdx; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnseq.cpp: In static member function 'static bool ncbi::objects::CAlnMixSequences::x_CompareChainScores(const ncbi::CRef&, const ncbi::CRef&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnseq.cpp:84:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] seq1->m_ChainScore == seq2->m_ChainScore && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ seq1->m_Score > seq2->m_Score || ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnsegments.cpp:35:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ seq1->m_ChildIdx < seq2->m_ChildIdx; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnsegments.cpp: In member function 'void ncbi::objects::CAlnMixSegments::FillUnalignedRegions()': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnsegments.cpp:311:27: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (plus && prev_start_plus_len < start || ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function 'void ncbi::objects::CAlnVecPrinter::PopsetStyle(int, ncbi::objects::CAlnVecPrinter::EAlgorithm)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:136:64: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (left_seg < 0 || seg > right_seg && right_seg > 0) { ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function 'void ncbi::objects::CAlnVecPrinter::ClustalStyle(int, ncbi::objects::CAlnVecPrinter::EAlgorithm)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:300:64: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (left_seg < 0 || seg > right_seg && right_seg > 0) { ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/alnmgr' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/score_builder_base.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alntext.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/sparse_ci.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/sparse_aln.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/pairwise_aln.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnvec_iterator.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnvec.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnseq.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnsegments.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnpos_ci.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnmix.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnmapprint.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnmap.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alndiag.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/aln_serial.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/aln_seqid.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/aln_generators.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/aln_converters.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/aln_builders.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include 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-I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp -o alnvecprint.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/pairwise_aln.cpp -o pairwise_aln.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/sparse_aln.cpp -o sparse_aln.o /tmp/pkgbuild/biology/ncbi-blast+/work.a/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/sparse_aln.cpp: In member function 'std::__cxx11::string& ncbi::CSparseAln::GetAlnSeqString(ncbi::IAlnExplorer::TNumrow, std::__cxx11::string&, const TSignedRange&, bool) const': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/sparse_aln.cpp:702:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (translate && aln_range.GetLength() >= trim_from + trim_to) { ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ lpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/sparse_ci.cpp -o sparse_ci.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alntext.cpp -o alntext.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/score_builder_base.cpp -o score_builder_base.o /bin/rm -f libxalnmgr.a .libxalnmgr.a.stamp ar cr libxalnmgr.a aln_builders.o aln_converters.o aln_generators.o aln_seqid.o aln_serial.o alndiag.o alnmap.o alnmapprint.o alnmatch.o alnmerger.o alnmix.o alnpos_ci.o alnsegments.o alnseq.o alnvec.o alnvec_iterator.o alnvecprint.o pairwise_aln.o sparse_aln.o sparse_ci.o alntext.o score_builder_base.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalnmgr.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxalnmgr.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxalnmgr.a /bin/ln -f .xalnmgr.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xalnmgr.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/alnmgr' /usr/pkg/bin/gmake -C demo -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/alnmgr/demo' /usr/pkg/bin/gmake -C unit_test -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/alnmgr/unit_test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/alnmgr' /usr/pkg/bin/gmake -C cddalignview -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/cddalignview' /usr/pkg/bin/gmake -C test -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/test' /usr/pkg/bin/gmake -C manip -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/manip' /usr/pkg/bin/gmake -C edit -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/protein_match/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/unit_test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/protein_match/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/protein_match/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT protein_match/Makefile test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/unit_test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/unit_test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/edit/protein_match/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/edit/unit_test/Makefile gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/edit' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit TMPL=edit -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/edit' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit TMPL=edit -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/promote.cpp: In member function 'void ncbi::objects::edit::CPromote::x_PromoteCdregion(ncbi::objects::CSeq_feat&, ncbi::objects::edit::CPromote::TRnaMap*) const': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/promote.cpp:228:68: warning: 'static void ncbi::objects::CCdregion_translate::TranslateCdregion(std::__cxx11::string&, const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, bool, bool, bool*, ncbi::objects::CCdregion_translate::ETranslationLengthProblemOptions)' is deprecated [-Wdeprecated-declarations] remove_trailingX); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/promote.cpp:52:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objmgr/util/sequence.hpp:934:17: note: declared here static void TranslateCdregion(string& prot, ^~~~~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp: In member function 'void ncbi::objects::edit::{anonymous}::CSeqdescSortMap::Init()': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:172:44: warning: array subscript has type 'char' [-Wchar-subscripts] while (descr_insert_order[index] != 0) ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:174:45: warning: array subscript has type 'char' [-Wchar-subscripts] if (descr_insert_order[index] >= size()) ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:174:47: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (descr_insert_order[index] >= size()) ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:175:52: warning: array subscript has type 'char' [-Wchar-subscripts] resize(descr_insert_order[index], kMax_Char); ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:176:44: warning: array subscript has type 'char' [-Wchar-subscripts] at(descr_insert_order[index]) = index; ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'void ncbi::objects::edit::ConvertRawToDeltaByNs(ncbi::objects::CSeq_inst&, size_t, int, size_t, int, bool, int, int, int)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:1823:71: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n_len >= min_unknown && (max_unknown < 0 || n_len <= max_unknown)) { ~~~~~~^~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:1825:74: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] } else if (n_len >= min_known && (max_known < 0 || n_len <= max_known)) { ~~~~~~^~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:1848:63: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n_len >= min_unknown && (max_unknown < 0 || n_len <= max_unknown)) { ~~~~~~^~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:1850:66: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] } else if (n_len >= min_known && (max_known < 0 || n_len <= max_known)) { ~~~~~~^~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'void ncbi::objects::edit::TrimSeqData(ncbi::objects::CBioseq_Handle, ncbi::CRef, const TCuts&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2429:16: warning: enumeration value 'eSeqSubMap' not handled in switch [-Wswitch] switch (seqmap_ci.GetType()) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2429:16: warning: enumeration value 'eSeqRef' not handled in switch [-Wswitch] /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2429:16: warning: enumeration value 'eSeqEnd' not handled in switch [-Wswitch] /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2429:16: warning: enumeration value 'eSeqChunk' not handled in switch [-Wswitch] /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2429:16: warning: enumeration value 'eSeqLiteral' not handled in switch [-Wswitch] /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'bool ncbi::objects::edit::s_FindSegment(const ncbi::objects::CDense_seg&, ncbi::objects::CDense_seg_Base::TDim, ncbi::TSeqPos, ncbi::objects::CDense_seg_Base::TNumseg&, ncbi::TSeqPos&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2785:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (pos >= start && pos < start + len) { ~~~~^~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2785:39: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (pos >= start && pos < start + len) { ~~~~^~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'void ncbi::objects::edit::TrimSeqAlign(ncbi::objects::CBioseq_Handle, ncbi::CRef, const TCuts&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2989:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] else if (seg_start < cut_from) { ~~~~~~~~~~^~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2992:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] else if (seg_start >= cut_from && ~~~~~~~~~~^~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seqid_guesser.cpp: In constructor 'ncbi::objects::edit::CSeqIdGuesser::CSeqIdGuesser(ncbi::objects::CSeq_entry_Handle)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seqid_guesser.cpp:92:91: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistd.hpp:37:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:35, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objects/general/Dbtag_.hpp:43, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objects/general/Dbtag.hpp:44, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seqid_guesser.cpp:31: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seqid_guesser.cpp: In static member function 'static std::vector > ncbi::objects::edit::CSeqIdGuesser::GetIdStrings(ncbi::objects::CBioseq_Handle)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seqid_guesser.cpp:171:87: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistd.hpp:37:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:35, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objects/general/Dbtag_.hpp:43, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objects/general/Dbtag.hpp:44, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seqid_guesser.cpp:31: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/dblink_field.cpp: In static member function 'static ncbi::objects::edit::CDBLinkField::EDBLinkFieldType ncbi::objects::edit::CDBLinkField::GetTypeForLabel(std::__cxx11::string)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/dblink_field.cpp:283:17: warning: variable 'normal' set but not used [-Wunused-but-set-variable] CTempString normal = GetNormalizedDBLinkFieldName(label); ^~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/link_cds_mrna.cpp: In function 'void ncbi::{anonymous}::xLinkCDSmRNAbyLabelAndLocation(ncbi::objects::CSeq_annot_Base::C_Data::TFtable&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/link_cds_mrna.cpp:135:13: warning: unused variable 'best_fit_size' [-Wunused-variable] int best_fit_size = -1; ^~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/cds_fix.cpp: In function 'bool ncbi::objects::edit::AdjustProteinFeaturePartialsToMatchCDS(ncbi::objects::CSeq_feat&, const ncbi::objects::CSeq_feat&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/cds_fix.cpp:411:63: warning: 'bool ncbi::objects::edit::AdjustFeaturePartialFlagForLocation(ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] any_change |= AdjustFeaturePartialFlagForLocation(new_prot); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/cds_fix.cpp:34:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/edit/cds_fix.hpp:66:43: note: declared here NCBI_DEPRECATED NCBI_XOBJEDIT_EXPORT bool AdjustFeaturePartialFlagForLocation(CSeq_feat& new_feat); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/cds_fix.cpp: In function 'bool ncbi::objects::edit::AdjustForCDSPartials(const ncbi::objects::CSeq_feat&, ncbi::objects::CSeq_entry_Handle)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/cds_fix.cpp:484:82: warning: 'bool ncbi::objects::edit::AdjustProteinMolInfoToMatchCDS(ncbi::objects::CMolInfo&, const ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] any_change |= AdjustProteinMolInfoToMatchCDS((*it)->SetMolinfo(), cds); ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/cds_fix.cpp:366:6: note: declared here bool AdjustProteinMolInfoToMatchCDS(CMolInfo& molinfo, const CSeq_feat& cds) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/cds_fix.cpp:490:75: warning: 'bool ncbi::objects::edit::AdjustProteinMolInfoToMatchCDS(ncbi::objects::CMolInfo&, const ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] AdjustProteinMolInfoToMatchCDS(new_molinfo_desc->SetMolinfo(), cds); ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/cds_fix.cpp:366:6: note: declared here bool AdjustProteinMolInfoToMatchCDS(CMolInfo& molinfo, const CSeq_feat& cds) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/cds_fix.cpp: In function 'bool ncbi::objects::edit::RetranslateCDS(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/cds_fix.cpp:550:56: warning: 'bool ncbi::objects::edit::AdjustForCDSPartials(const ncbi::objects::CSeq_feat&, ncbi::objects::CSeq_entry_Handle)' is deprecated [-Wdeprecated-declarations] AdjustForCDSPartials(cds, peh.GetSeq_entry_Handle()); ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/cds_fix.cpp:451:6: note: declared here bool AdjustForCDSPartials(const CSeq_feat& cds, CSeq_entry_Handle seh) ^~~~~~~~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/cds_fix.cpp: In function 'void ncbi::objects::edit::s_AdjustForUTR(const ncbi::objects::CSeq_feat&, int, int, ncbi::objects::CSeq_loc&, bool&, bool&, ncbi::objects::CScope&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/cds_fix.cpp:646:65: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (utr.GetLocation().GetStart(eExtreme_Positional) != cd_stop + 1) { ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/cds_fix.cpp:651:64: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (utr.GetLocation().GetStop(eExtreme_Positional) != cd_start - 1) { ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/cds_fix.cpp:661:64: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (utr.GetLocation().GetStop(eExtreme_Positional) != cd_start - 1) { ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/cds_fix.cpp:666:65: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (utr.GetLocation().GetStart(eExtreme_Positional) != cd_stop + 1) { ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/loc_edit.cpp: In member function 'bool ncbi::objects::edit::CLocationEditPolicy::ApplyPolicyToFeature(ncbi::objects::CSeq_feat&, ncbi::objects::CScope&) const': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/loc_edit.cpp:649:59: warning: 'bool ncbi::objects::edit::AdjustFeaturePartialFlagForLocation(ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] any_change |= AdjustFeaturePartialFlagForLocation(feat); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/loc_edit.cpp:35:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/edit/cds_fix.hpp:66:43: note: declared here NCBI_DEPRECATED NCBI_XOBJEDIT_EXPORT bool AdjustFeaturePartialFlagForLocation(CSeq_feat& new_feat); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/loc_edit.cpp: In function 'bool ncbi::objects::edit::ApplyPolicyToFeature(const ncbi::objects::edit::CLocationEditPolicy&, const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, bool, bool)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/loc_edit.cpp:882:69: warning: 'bool ncbi::objects::edit::RetranslateCDS(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&)' is deprecated [-Wdeprecated-declarations] if (!retranslate_cds || !RetranslateCDS(*new_feat, scope)) { ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/loc_edit.cpp:35:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/edit/cds_fix.hpp:69:43: note: declared here NCBI_DEPRECATED NCBI_XOBJEDIT_EXPORT bool RetranslateCDS(const CSeq_feat& cds, CScope& scope); ^~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/mail_report.cpp: In function 'void ncbi::objects::edit::MakeMailReportPostReport(ncbi::objects::CSeq_table&, ncbi::objects::CScope&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/mail_report.cpp:103:13: warning: unused variable 'taxid' [-Wunused-variable] int taxid = 0; ^~~~~ gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/edit' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/text_object_description.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/feature_propagate.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/apply_mods.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/external_annots.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/gap_trim.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/publication_edit.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/parse_text_options.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/rna_edit.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/remote_updater.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/source_edit.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/gaps_edit.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/feattable_edit.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/mail_report.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/loc_edit.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/cds_fix.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/link_cds_mrna.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/gb_block_field.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/text_desc_field.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/struc_comm_field.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/dblink_field.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seqid_guesser.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/string_constraint.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/apply_object.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/field_handler.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/autodef_with_tax.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/promote.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/gene_utils.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/gene_utils.cpp -o gene_utils.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp -o seq_entry_edit.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/promote.cpp -o promote.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/autodef_with_tax.cpp -o autodef_with_tax.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/field_handler.cpp -o field_handler.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/apply_object.cpp -o apply_object.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/string_constraint.cpp -o string_constraint.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seqid_guesser.cpp -o seqid_guesser.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/dblink_field.cpp -o dblink_field.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/struc_comm_field.cpp -o struc_comm_field.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/text_desc_field.cpp -o text_desc_field.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/gb_block_field.cpp -o gb_block_field.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/link_cds_mrna.cpp -o link_cds_mrna.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/cds_fix.cpp -o cds_fix.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/loc_edit.cpp -o loc_edit.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/mail_report.cpp -o mail_report.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/feattable_edit.cpp -o feattable_edit.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseM/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/rna_edit.cpp: In member function 'bool ncbi::objects::edit::CFindITSParser::IsLengthTooLarge(const string&, int, int, const std::vector&, const std::vector&, const std::vector&, int)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/rna_edit.cpp:261:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int j = i + 1; j < spans.size(); j++) ~~^~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/parse_text_options.cpp: In function 'ncbi::SIZE_TYPE ncbi::objects::edit::FindWithOptions(const string&, const string&, ncbi::SIZE_TYPE, bool, bool)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/parse_text_options.cpp:47:73: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pos = NStr::Find(str, pattern, pos, NPOS, NStr::eFirst, str_case); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistd.hpp:37:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/edit/parse_text_options.hpp:34, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/parse_text_options.cpp:33: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/text_object_description.cpp:336:15: warning: 'std::__cxx11::string ncbi::objects::edit::GetTextObjectDescription(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, const string&)' defined but not used [-Wunused-function] static string GetTextObjectDescription(const CSeq_feat& seq_feat, CScope& scope, const string& product) ^~~~~~~~~~~~~~~~~~~~~~~~ T/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/gaps_edit.cpp -o gaps_edit.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/source_edit.cpp -o source_edit.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/rna_edit.cpp -o rna_edit.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/remote_updater.cpp -o remote_updater.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/parse_text_options.cpp -o parse_text_options.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/publication_edit.cpp -o publication_edit.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/gap_trim.cpp -o gap_trim.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/external_annots.cpp -o external_annots.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/feature_propagate.cpp -o feature_propagate.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/apply_mods.cpp -o apply_mods.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/text_object_description.cpp -o text_object_description.o /bin/rm -f libxobjedit.a .libxobjedit.a.stamp ar cr libxobjedit.a gene_utils.o seq_entry_edit.o promote.o autodef_with_tax.o field_handler.o apply_object.o string_constraint.o seqid_guesser.o dblink_field.o struc_comm_field.o text_desc_field.o gb_block_field.o link_cds_mrna.o cds_fix.o loc_edit.o mail_report.o feattable_edit.o gaps_edit.o source_edit.o rna_edit.o remote_updater.o parse_text_options.o publication_edit.o gap_trim.o external_annots.o feature_propagate.o apply_mods.o text_object_description.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjedit.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxobjedit.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxobjedit.a /bin/ln -f .xobjedit.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xobjedit.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/edit' /usr/pkg/bin/gmake -C protein_match -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/edit/protein_match' /usr/pkg/bin/gmake -C unit_test -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/edit/unit_test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/edit' /usr/pkg/bin/gmake -C cleanup -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/cleanup/test/Makefile gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/cleanup' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup TMPL=cleanup -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/cleanup' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup TMPL=cleanup -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/cleanup.cpp: In static member function 'static bool ncbi::objects::CCleanup::x_HasShortIntron(const ncbi::objects::CSeq_loc&, size_t)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/cleanup.cpp:2700:68: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (abs((long int)this_start - (long int)prev_end) < min_len) { ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp: In static member function 'static bool ncbi::objects::CCleanup::s_AddNumToUserField(ncbi::objects::CUser_field&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp:369:53: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (!field.IsSetNum() || field.GetNum() != field.GetData().GetStrs().size()) { ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp:375:53: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (!field.IsSetNum() || field.GetNum() != field.GetData().GetInts().size()) { ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp:381:53: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (!field.IsSetNum() || field.GetNum() != field.GetData().GetReals().size()) { ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp:387:53: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (!field.IsSetNum() || field.GetNum() != field.GetData().GetOss().size()) { ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/capitalization_string.cpp: In function 'void ncbi::objects::CapitalizeAfterApostrophe(std::__cxx11::string&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/capitalization_string.cpp:909:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (rslt[0] != start) ~~~~~~~~^~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/capitalization_string.cpp: In function 'void ncbi::objects::FixAffiliationShortWordsInElement(std::__cxx11::string&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/capitalization_string.cpp:948:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (rslt[0] != start) ~~~~~~~~^~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/capitalization_string.cpp: In function 'void ncbi::objects::FixOrdinalNumbers(std::__cxx11::string&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/capitalization_string.cpp:975:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (rslt[0] != start) ~~~~~~~~^~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp: In member function 'void ncbi::objects::CNewCleanup_imp::x_RemoveFlankingQuotes(std::__cxx11::string&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp:6394:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for( ; first_pos <= last_pos ; ++first_pos, --last_pos ) { ~~~~~~~~~~^~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp:6408:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if( first_pos > last_pos ) { ~~~~~~~~~~^~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp: In member function 'void ncbi::objects::CNewCleanup_imp::RnarefGenBC(ncbi::objects::CRNA_ref&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp:7621:10: warning: unused variable 'changed' [-Wunused-variable] bool changed = false; ^~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp: In member function 'void ncbi::objects::CNewCleanup_imp::x_GBQualToOrgRef(ncbi::objects::COrg_ref&, ncbi::objects::CSeq_feat&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp:7880:10: warning: variable 'any_conversions' set but not used [-Wunused-but-set-variable] bool any_conversions = false; ^~~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp: In member function 'void ncbi::objects::CNewCleanup_imp::RnaFeatBC(ncbi::objects::CRNA_ref&, ncbi::objects::CSeq_feat&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp:8506:102: warning: enum constant in boolean context [-Wint-in-bool-context] (rna.GetType() == CRNA_ref::eType_mRNA || rna.GetType() == CRNA_ref::eType_rRNA || CRNA_ref::eType_tRNA) && ^~~~~~~~~~ gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/cleanup' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/capitalization_string.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/cleanup_author.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/gene_qual_normalization.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/cleanup_utils.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/cleanup.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/autogenerated_cleanup.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/autogenerated_cleanup.cpp -o autogenerated_cleanup.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp -o autogenerated_extended_cleanup.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/cleanup.cpp -o cleanup.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/cleanup_utils.cpp -o cleanup_utils.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/gene_qual_normalization.cpp -o gene_qual_normalization.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp -o cleanup_user_object.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/cleanup_author.cpp -o cleanup_author.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp -o newcleanupp.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/capitalization_string.cpp -o capitalization_string.o /bin/rm -f libxcleanup.a .libxcleanup.a.stamp ar cr libxcleanup.a autogenerated_cleanup.o autogenerated_extended_cleanup.o cleanup.o cleanup_utils.o gene_qual_normalization.o cleanup_user_object.o cleanup_author.o newcleanupp.o capitalization_string.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcleanup.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxcleanup.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxcleanup.a /bin/ln -f .xcleanup.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xcleanup.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/cleanup' /usr/pkg/bin/gmake -C test -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/cleanup/test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/cleanup' /usr/pkg/bin/gmake -C format -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/format' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format TMPL=xformat -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/format' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format TMPL=xformat -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/comment_item.cpp: In function 'void ncbi::objects::s_GetAssemblyInfo(const ncbi::objects::CBioseqContext&, std::__cxx11::string&, const ncbi::objects::CUser_object&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/comment_item.cpp:369:16: warning: unused variable 'is_html' [-Wunused-variable] const bool is_html = ctx.Config().DoHTML(); ^~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/feature_item.cpp: In member function 'void ncbi::objects::CFeatureItem::x_AddQualExceptions(ncbi::objects::CBioseqContext&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/feature_item.cpp:1378:28: warning: unused variable 'cfg' [-Wunused-variable] const CFlatFileConfig& cfg = ctx.Config(); ^~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/feature_item.cpp: In function 'const string& ncbi::objects::s_AaName(int)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/feature_item.cpp:2012:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( idx > 0 && idx < ArraySize(s_TrnaList) ) { ~~~~^~~~~~~~~~~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/feature_item.cpp: In static member function 'static std::__cxx11::string ncbi::objects::CFeatureItem::x_SeqIdWriteForTable(const ncbi::objects::CBioseq&, bool, bool)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/feature_item.cpp:5340:20: warning: variable 'patent' set but not used [-Wunused-but-set-variable] const CSeq_id* patent = NULL; ^~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/feature_item.cpp:5341:20: warning: variable 'pdb' set but not used [-Wunused-but-set-variable] const CSeq_id* pdb = NULL; ^~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/primary_item.cpp: In member function 'void ncbi::objects::CPrimaryItem::x_GetStrForPrimary(ncbi::objects::CBioseqContext&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/primary_item.cpp:214:63: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( ctx.IsRefSeq() && last_stop > -1 && (this_start > (last_stop + 1)) ) { ~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/primary_item.cpp:215:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (this_start < (15 + last_stop) ) { ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/format' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/flat_qual_slots.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/gene_finder.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/inst_info_map.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/html_anchor_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/gather_iter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/cigar_formatter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/sam_formatter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/genome_project_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/gap_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/alignment_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/flat_file_config.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/gbseq_formatter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/ftable_formatter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/ftable_gather.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/origin_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/ostream_text_ostream.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/item_ostream.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/format_item_ostream.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/genbank_formatter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/embl_formatter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/item_formatter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/flat_file_generator.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/genbank_gather.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/embl_gather.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/gather_items.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/context.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/qualifiers.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/flat_seqloc.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/tsa_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/wgs_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/version_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/source_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/sequence_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/segment_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/reference_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/primary_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/locus_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/keywords_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/ctrl_items.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/genome_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/feature_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/defline_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/dbsource_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/date_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/contig_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/comment_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/basecount_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/accession_item.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/accession_item.cpp -o accession_item.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/basecount_item.cpp -o basecount_item.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/comment_item.cpp -o comment_item.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/contig_item.cpp -o contig_item.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/date_item.cpp -o date_item.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/dbsource_item.cpp -o dbsource_item.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/defline_item.cpp -o defline_item.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/feature_item.cpp -o feature_item.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/genome_item.cpp -o genome_item.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/ctrl_items.cpp -o ctrl_items.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/keywords_item.cpp -o keywords_item.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/locus_item.cpp -o locus_item.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/primary_item.cpp -o primary_item.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FIL/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/source_item.cpp: In member function 'void ncbi::objects::CSourceItem::x_GatherInfoIdx(ncbi::objects::CBioseqContext&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/source_item.cpp:178:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < sizeof (legal_organelles) / sizeof (const char*); i++) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/source_item.cpp: In member function 'void ncbi::objects::CSourceItem::x_SetSource(const ncbi::objects::CBioSource&, const ncbi::CSerialObject&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/source_item.cpp:383:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( genome >= s_organelle_prefix_size ) { ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/qualifiers.cpp: In member function 'virtual void ncbi::objects::CFlatSeqIdQVal::Format(ncbi::objects::TFlatQuals&, const ncbi::CTempString&, ncbi::objects::CBioseqContext&, ncbi::objects::IFlatQVal::TFlags) const': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/qualifiers.cpp:1104:10: warning: unused variable 'bHtml' [-Wunused-variable] bool bHtml = ctx.Config().DoHTML(); ^~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/gather_items.cpp: In member function 'void ncbi::objects::CFlatGatherer::x_IdComments(ncbi::objects::CBioseqContext&, ncbi::objects::CFlatGatherer::EGenomeAnnotComment) const': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/gather_items.cpp:1114:34: warning: unused variable 'format' [-Wunused-variable] CCommentItem::ECommentFormat format = ctx.Config().DoHTML() ? ^~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/gather_items.cpp: In member function 'void ncbi::objects::CFlatGatherer::x_CollectBioSources(ncbi::objects::CFlatGatherer::TSourceFeatSet&) const': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/gather_items.cpp:1904:13: warning: unused variable 'scope' [-Wunused-variable] CScope* scope = &ctx.GetScope(); ^~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/gather_items.cpp: In lambda function: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/gather_items.cpp:2985:59: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while (gap_data.has_gap && gap_data.gap_start < feat_start) { ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/gather_items.cpp:2999:56: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (gap_data.has_gap && gap_data.gap_start == feat_start && feat.GetFeatSubtype() == CSeqFeatData::eSubtype_gap) { ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/gather_items.cpp: At global scope: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/gather_items.cpp:2834:13: warning: 'bool ncbi::objects::s_IsExon(const ncbi::objects::CSeq_feat_Handle&)' defined but not used [-Wunused-function] static bool s_IsExon(const CSeq_feat_Handle& feat) ^~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/gather_items.cpp:2829:13: warning: 'bool ncbi::objects::s_IsSNP(const ncbi::objects::CSeq_feat_Handle&)' defined but not used [-Wunused-function] static bool s_IsSNP(const CSeq_feat_Handle& feat) ^~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/gather_items.cpp:829:13: warning: 'bool ncbi::objects::s_NsAreGaps(const ncbi::objects::CBioseq_Handle&, ncbi::objects::CBioseqContext&)' defined but not used [-Wunused-function] static bool s_NsAreGaps(const CBioseq_Handle& seq, CBioseqContext& ctx) ^~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/flat_file_generator.cpp: In member function 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_entry_Handle&, ncbi::objects::CFlatItemOStream&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/flat_file_generator.cpp:319:10: warning: variable 'isNgNtNwNz' set but not used [-Wunused-but-set-variable] bool isNgNtNwNz = false; ^~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/flat_file_generator.cpp:320:10: warning: variable 'isGED' set but not used [-Wunused-but-set-variable] bool isGED = false; ^~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/flat_file_generator.cpp:321:10: warning: variable 'isTPA' set but not used [-Wunused-but-set-variable] bool isTPA = false; ^~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/genbank_formatter.cpp:281:15: warning: 'std::__cxx11::string ncbi::objects::s_get_anchor_html(const string&, ncbi::TGi)' defined but not used [-Wunused-function] static string s_get_anchor_html(const string & sAnchorName, TGi iGi ) ^~~~~~~~~~~~~~~~~ E_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/reference_item.cpp -o reference_item.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/segment_item.cpp -o segment_item.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/sequence_item.cpp -o sequence_item.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/source_item.cpp -o source_item.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/version_item.cpp -o version_item.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/wgs_item.cpp -o wgs_item.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/tsa_item.cpp -o tsa_item.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/flat_seqloc.cpp -o flat_seqloc.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/qualifiers.cpp -o qualifiers.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/context.cpp -o context.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/gather_items.cpp -o gather_items.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/embl_gather.cpp -o embl_gather.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/genbank_gather.cpp -o genbank_gather.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/flat_file_generator.cpp -o flat_file_generator.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/item_formatter.cpp -o item_formatter.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/embl_formatter.cpp -o embl_formatter.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/genbank_formatter.cpp -o genbank_formatter.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/format_item_ostream.cpp -o format_item_ostream.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/item_ostream.cpp -o item_ostream.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/ostream_text_ostream.cpp -o ostream_text_ostream.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/origin_item.cpp -o origin_item.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/ftable_gather.cpp -o ftable_gather.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/ftable_formatter.cpp -o ftable_formatter.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/gbseq_formatter.cpp -o gbse/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/gbseq_formatter.cpp: In member function 'virtual void ncbi::objects::CGBSeqFormatter::FormatSequence(const ncbi::objects::CSequenceItem&, ncbi::objects::IFlatTextOStream&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/gbseq_formatter.cpp:1025:23: warning: unused variable 'vec' [-Wunused-variable] const CSeqVector& vec = seq.GetSequence(); ^~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/gbseq_formatter.cpp:1028:13: warning: unused variable 'base_count' [-Wunused-variable] TSeqPos base_count = from; ^~~~~~~~~~ q_formatter.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/flat_file_config.cpp -o flat_file_config.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/alignment_item.cpp -o alignment_item.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/gap_item.cpp -o gap_item.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/genome_project_item.cpp -o genome_project_item.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/sam_formatter.cpp -o sam_formatter.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/cigar_formatter.cpp -o cigar_formatter.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/gather_iter.cpp -o gather_iter.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/html_anchor_item.cpp -o html_anchor_item.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/inst_info_map.cpp -o inst_info_map.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/gene_finder.cpp -o gene_finder.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/flat_qual_slots.cpp -o flat_qual_slots.o /bin/rm -f libxformat.a .libxformat.a.stamp ar cr libxformat.a accession_item.o basecount_item.o comment_item.o contig_item.o date_item.o dbsource_item.o defline_item.o feature_item.o genome_item.o ctrl_items.o keywords_item.o locus_item.o primary_item.o reference_item.o segment_item.o sequence_item.o source_item.o version_item.o wgs_item.o tsa_item.o flat_seqloc.o qualifiers.o context.o gather_items.o embl_gather.o genbank_gather.o flat_file_generator.o item_formatter.o embl_formatter.o genbank_formatter.o format_item_ostream.o item_ostream.o ostream_text_ostream.o origin_item.o ftable_gather.o ftable_formatter.o gbseq_formatter.o flat_file_config.o alignment_item.o gap_item.o genome_project_item.o sam_formatter.o cigar_formatter.o gather_iter.o html_anchor_item.o inst_info_map.o gene_finder.o flat_qual_slots.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxformat.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxformat.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxformat.a /bin/ln -f .xformat.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xformat.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/format' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/format' /usr/pkg/bin/gmake -C validator -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/validator' /usr/pkg/bin/gmake -C asniotest -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/asniotest' /usr/pkg/bin/gmake -C align -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/align' /usr/pkg/bin/gmake -C seqmasks_io -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/seqmasks_io/unit_test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/seqmasks_io/unit_test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/seqmasks_io/unit_test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io/unit_test/Makefile gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/seqmasks_io/mask_writer_int.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/seqmasks_io/mask_writer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp -o mask_cmdline_args.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp -o mask_bdb_reader.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp -o mask_fasta_reader.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/seqmasks_io/mask_writer.cpp -o mask_writer.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp -o mask_writer_fasta.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/seqmasks_io/mask_writer_int.cpp -o mask_writer_int.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp -o mask_writer_tab.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp -o mask_writer_seqloc.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp -o mask_writer_blastdb_maskinfo.o /bin/rm -f libseqmasks_io.a .libseqmasks_io.a.stamp ar cr libseqmasks_io.a mask_cmdline_args.o mask_bdb_reader.o mask_fasta_reader.o mask_writer.o mask_writer_fasta.o mask_writer_int.o mask_writer_tab.o mask_writer_seqloc.o mask_writer_blastdb_maskinfo.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqmasks_io.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqmasks_io.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libseqmasks_io.a /bin/ln -f .seqmasks_io.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.seqmasks_io.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /usr/pkg/bin/gmake -C unit_test -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io/unit_test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /usr/pkg/bin/gmake -C eutils -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/eutils' /usr/pkg/bin/gmake -C align_format -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/align_format' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/align_format TMPL=align_format -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/align_format' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/align_format TMPL=align_format -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/align_format/showalign.cpp: In function 'void ncbi::align_format::s_MakeDomainString(int, int, const string&, std::__cxx11::string&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/align_format/showalign.cpp:4387:49: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = actual_first_pos, j = 0; i < domain_string.size() - 1 && j < domain_name.size(); i ++, j ++){ ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/align_format/showalign.cpp:4387:81: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = actual_first_pos, j = 0; i < domain_string.size() - 1 && j < domain_name.size(); i ++, j ++){ ~~^~~~~~~~~~~~~~~~~~~~ gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/align_format' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/align_format/aln_printer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/align_format/taxFormat.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/align_format/seqalignfilter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/align_format/vectorscreen.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/align_format/tabular.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/align_format/showalign.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/align_format/showdefline.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/align_format/align_format_util.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/align_format/format_flags.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/align_format/format_flags.cpp -o format_flags.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/align_format/align_format_util.cpp -o align_format_util.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/align_format/showdefline.cpp -o showdefline.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/align_format/showalign.cpp -o showalign.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/align_format/tabular.cpp -o tabular.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/align_format/vectorscreen.cpp -o vectorscreen.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/align_format/seqalignfilter.cpp -o seqalignfilter.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/align_format/taxFormat.cpp -o taxFormat.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/align_format/aln_printer.cpp -o aln_printer.o /bin/rm -f libalign_format.a .libalign_format.a.stamp ar cr libalign_format.a format_flags.o align_format_util.o showdefline.o showalign.o tabular.o vectorscreen.o seqalignfilter.o taxFormat.o aln_printer.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libalign_format.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libalign_format.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libalign_format.a /bin/ln -f .align_format.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.align_format.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/align_format' /usr/pkg/bin/gmake -C unit_test -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Nothing to be done for 'mark-as-disabled_r'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/align_format' /usr/pkg/bin/gmake -C snputil -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/snputil' /usr/pkg/bin/gmake -C uudutil -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/uudutil' /usr/pkg/bin/gmake -C variation -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/variation' /usr/pkg/bin/gmake -C writers -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/writers' NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/pkg/bin/gmake -C pubseq_gateway -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway' gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools' /usr/pkg/bin/gmake -C ctools -w -j3 --jobserver-auth=8,9 all_r || exit 5 gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build' gmake[2]: warning: -jN forced in submake: disabling jobserver mode. gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/ctools' /usr/pkg/bin/gmake -C sra -w -j3 --jobserver-auth=8,9 all_r || exit 5 gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build' gmake[2]: warning: -jN forced in submake: disabling jobserver mode. gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/sra' /usr/pkg/bin/gmake -C algo -w -j3 --jobserver-auth=8,9 all_r || exit 5 gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build' gmake[2]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/sequence/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/align/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/structure/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/sequence/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/sequence/Makefile.in test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/align/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/align/Makefile.in test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/structure/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/structure/Makefile.in /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/ms/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/gnomon/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/tree/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/ms/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/ms/Makefile.in test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/gnomon/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/gnomon/Makefile.in /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/phy_tree/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/tree/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/tree/Makefile.in /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/seqqa/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/phy_tree/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/phy_tree/Makefile.in /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/cobalt/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/seqqa/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel 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/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT tree/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/ms/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT phy_tree/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/tree/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/gnomon/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT seqqa/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT cobalt/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/phy_tree/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT text/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/seqqa/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/cobalt/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT volume_merge/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT primer/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/text/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT id_mapper/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/volume_merge/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/primer/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/id_mapper/Makefile /usr/pkg/bin/gmake -C dustmask -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/dustmask' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/dustmask TMPL=xalgodustmask -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/dustmask' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/dustmask TMPL=xalgodustmask -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/dustmask' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/dustmask/symdust.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/dustmask/symdust.cpp -o symdust.o /bin/rm -f libxalgodustmask.a .libxalgodustmask.a.stamp ar cr libxalgodustmask.a symdust.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgodustmask.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxalgodustmask.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxalgodustmask.a /bin/ln -f .xalgodustmask.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xalgodustmask.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/dustmask' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/dustmask' /usr/pkg/bin/gmake -C winmask -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/winmask' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask TMPL=xalgowinmask -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/winmask' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask TMPL=xalgowinmask -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/winmask' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_istat.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/win_mask_config.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/win_mask_util.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/win_mask_dup_table.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/win_mask_counts_converter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_cache_boost.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_istat_obinary.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_uset_hash.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_istat_bin.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_uset_array.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_ostat_bin.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_istat_factory.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_uset_simple.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_istat_ascii.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_ostat.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_ostat_factory.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_window_pattern.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_window_ambig.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_window.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_util.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_score_min.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_score_mean.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker.cpp -o seq_masker.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_score_mean.cpp -o seq_masker_score_mean.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp -o seq_masker_score_mean_glob.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_score_min.cpp -o seq_masker_score_min.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_util.cpp -o seq_masker_util.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_window.cpp -o seq_masker_window.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_window_ambig.cpp -o seq_masker_window_ambig.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_window_pattern.cpp -o seq_masker_window_pattern.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp -o seq_masker_window_pattern_ambig.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_ostat_factory.cpp -o seq_masker_ostat_factory.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_ostat.cpp -o seq_masker_ostat.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp -o seq_masker_ostat_ascii.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_istat_ascii.cpp -o seq_masker_istat_ascii.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_uset_simple.cpp -o seq_masker_uset_simple.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_istat_factory.cpp -o seq_masker_istat_factory.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_ostat_bin.cpp -o seq_masker_ostat_bin.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OF/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp: In constructor 'ncbi::CSeqMaskerIstatOAscii::CSeqMaskerIstatOAscii(const string&, Uint4, Uint4, Uint4, Uint4, Uint4, Uint4, Uint4)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp:113:49: warning: 'unit_size' may be used uninitialized in this function [-Wmaybe-uninitialized] if( k == 0U || k > (Uint4)(2*unit_size - 1) ) ~^~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/win_mask_util.cpp: In member function 'virtual bool ncbi::CWinMaskUtil::CIdSet_TextMatch::find(const ncbi::objects::CBioseq_Handle&) const': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/win_mask_util.cpp:130:45: warning: 'std::__cxx11::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::TGetTitleFlags)' is deprecated [-Wdeprecated-declarations] string id_str = sequence::GetTitle( bsh ); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/win_mask_util.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objmgr/util/sequence.hpp:289:8: note: declared here string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0); ^~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/win_mask_config.cpp: In static member function 'static void ncbi::CWinMaskConfig::AddWinMaskArgs(ncbi::CArgDescriptions&, ncbi::CWinMaskConfig::EAppType, bool)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/win_mask_config.cpp:181:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if(type == eAny || type >= eGenerateMasksWithDuster) ^~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/win_mask_config.cpp:185:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' arg_desc.AddDefaultKey( "dust_level", "dust_level", ^~~~~~~~ FSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_uset_array.cpp -o seq_masker_uset_array.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_istat_bin.cpp -o seq_masker_istat_bin.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt.cpp -o seq_masker_ostat_opt.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp -o seq_masker_ostat_opt_ascii.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_uset_hash.cpp -o seq_masker_uset_hash.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp -o seq_masker_istat_oascii.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp -o seq_masker_ostat_opt_bin.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_istat_obinary.cpp -o seq_masker_istat_obinary.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_cache_boost.cpp -o seq_masker_cache_boost.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/win_mask_counts_converter.cpp -o win_mask_counts_converter.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/win_mask_dup_table.cpp -o win_mask_dup_table.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp -o win_mask_gen_counts.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/win_mask_util.cpp -o win_mask_util.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/win_mask_config.cpp -o win_mask_config.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_istat.cpp -o seq_masker_istat.o /bin/rm -f libxalgowinmask.a .libxalgowinmask.a.stamp ar cr libxalgowinmask.a seq_masker.o seq_masker_score_mean.o seq_masker_score_mean_glob.o seq_masker_score_min.o seq_masker_util.o seq_masker_window.o seq_masker_window_ambig.o seq_masker_window_pattern.o seq_masker_window_pattern_ambig.o seq_masker_ostat_factory.o seq_masker_ostat.o seq_masker_ostat_ascii.o seq_masker_istat_ascii.o seq_masker_uset_simple.o seq_masker_istat_factory.o seq_masker_ostat_bin.o seq_masker_uset_array.o seq_masker_istat_bin.o seq_masker_ostat_opt.o seq_masker_ostat_opt_ascii.o seq_masker_uset_hash.o seq_masker_istat_oascii.o seq_masker_ostat_opt_bin.o seq_masker_istat_obinary.o seq_masker_cache_boost.o win_mask_counts_converter.o win_mask_dup_table.o win_mask_gen_counts.o win_mask_util.o win_mask_config.o seq_masker_istat.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgowinmask.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxalgowinmask.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxalgowinmask.a /bin/ln -f .xalgowinmask.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xalgowinmask.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/winmask' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/winmask' /usr/pkg/bin/gmake -C sequence -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/sequence' /usr/pkg/bin/gmake -C blast -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/dbindex_search/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blast_sra_input/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/gumbel_params/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/dbindex_search/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/dbindex_search/Makefile.in test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blast_sra_input/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blast_sra_input/Makefile.in test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/gumbel_params/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/gumbel_params/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT dbindex_search/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT blast_sra_input/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT gumbel_params/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/dbindex_search/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/gumbel_params/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/blast_sra_input/Makefile /usr/pkg/bin/gmake -C composition_adjustment -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -w -j3 --jobserver-auth=14,15 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -w -j3 --jobserver-auth=14,15 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/composition_adjustment/compo_heap.c:137:1: warning: 's_CompoHeapIsValid' defined but not used [-Wunused-function] s_CompoHeapIsValid(BlastCompo_HeapRecord * heapArray, int i, int n) ^~~~~~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c:200:1: warning: 's_DistinctAlignmentsLength' defined but not used [-Wunused-function] s_DistinctAlignmentsLength(BlastCompo_Alignment * list) ^~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c:185:1: warning: 's_AlignmentsAreSorted' defined but not used [-Wunused-function] s_AlignmentsAreSorted(BlastCompo_Alignment * alignments) ^~~~~~~~~~~~~~~~~~~~~ gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/composition_adjustment/unified_pvalues.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/composition_adjustment/smith_waterman.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/composition_adjustment/composition_adjustment.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/composition_adjustment/compo_heap.c. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/composition_adjustment/compo_heap.c -o compo_heap.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c -o compo_mode_condition.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/composition_adjustment/composition_adjustment.c -o composition_adjustment.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c -o matrix_frequency_data.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c -o nlm_linear_algebra.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c -o optimize_target_freq.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c -o redo_alignment.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/composition_adjustment/smith_waterman.c -o smith_waterman.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/composition_adjustment/unified_pvalues.c -o unified_pvalues.o /bin/rm -f libcomposition_adjustment.a .libcomposition_adjustment.a.stamp ar cr libcomposition_adjustment.a compo_heap.o compo_mode_condition.o composition_adjustment.o matrix_frequency_data.o nlm_linear_algebra.o optimize_target_freq.o redo_alignment.o smith_waterman.o unified_pvalues.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcomposition_adjustment.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libcomposition_adjustment.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libcomposition_adjustment.a /bin/ln -f .composition_adjustment.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.composition_adjustment.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' /usr/pkg/bin/gmake -C core -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/core' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core TMPL=blast -w -j3 --jobserver-auth=14,15 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/core' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core TMPL=blast -w -j3 --jobserver-auth=14,15 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_kappa.c: In function 'Blast_RedoAlignmentCore_MT': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_kappa.c:3417:11: warning: unused variable 'my_stderr' [-Wunused-variable] FILE *my_stderr = stderr; ^~~~~~~~~ gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/core' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/spliced_hits.c. 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Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/aa_ungapped.c. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/aa_ungapped.c -o aa_ungapped.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 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-I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_engine.c -o blast_engine.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_extend.c -o blast_extend.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_filter.c -o blast_filter.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_gapalign.c -o blast_gapalign.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_hits.c -o blast_hits.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_hspstream.c -o blast_hspstream.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_itree.c -o blast_itree.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_kappa.c -o blast_kappa.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_lookup.c -o blast_lookup.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOU/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_aalookup.c: In function 'BlastAaLookupFinalize': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_aalookup.c:324:13: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] calloc(lookup->backbone_size, sizeof(AaLookupBackboneCell)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/core/ncbi_std.h:40:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/core/blast_aalookup.h:36, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_aalookup.c:31: /usr/include/stdlib.h:109:7: note: in a call to allocation function 'calloc' declared here void *calloc(size_t, size_t); ^~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_aalookup.c:371:13: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] calloc(lookup->backbone_size, sizeof(AaLookupSmallboneCell)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/core/ncbi_std.h:40:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/core/blast_aalookup.h:36, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_aalookup.c:31: /usr/include/stdlib.h:109:7: note: in a call to allocation function 'calloc' declared here void *calloc(size_t, size_t); ^~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_util.c: In function 'BlastProgram2Number': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_util.c:306:10: warning: this 'if' clause does not guard... [-Wmisleading-indentation] else if (strcasecmp("mapper", program) == 0) ^~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_util.c:309:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' return 0; ^~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/link_hsps.c: In function 's_FwdCompareHSPs': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/link_hsps.c:133:10: warning: this 'if' clause does not guard... [-Wmisleading-indentation] else if (h1->context > h2->context) ^~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/link_hsps.c:136:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (h1->query.offset < h2->query.offset) ^~ RCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_aalookup.c -o blast_aalookup.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_aascan.c -o blast_aascan.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_nalookup.c -o blast_nalookup.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_nascan.c -o blast_nascan.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_message.c -o blast_message.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_options.c -o blast_options.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_psi.c -o blast_psi.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/na_ungapped.c -o na_ungapped.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_psi_priv.c -o blast_psi_priv.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_seg.c -o blast_seg.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_seqsrc.c -o blast_seqsrc.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_setup.c -o blast_setup.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include 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-Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/gencode_singleton.c -o gencode_singleton.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/index_ungapped.c -o index_ungapped.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_traceback_mt_priv.c -o blast_traceback_mt_priv.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_hspstream_mt_utils.c -o blast_hspstream_mt_utils.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/boost_erf.c -o boost_erf.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/jumper.c -o jumper.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/hspfilter_mapper.c -o hspfilter_mapper.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/spliced_hits.c -o spliced_hits.o /bin/rm -f libblast.a .libblast.a.stamp ar cr libblast.a aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o blast_filter.o blast_gapalign.o blast_hits.o blast_hspstream.o blast_itree.o blast_kappa.o blast_lookup.o blast_aalookup.o blast_aascan.o blast_nalookup.o blast_nascan.o blast_message.o blast_options.o blast_psi.o na_ungapped.o blast_psi_priv.o blast_seg.o blast_seqsrc.o blast_setup.o blast_stat.o blast_traceback.o blast_util.o gapinfo.o greedy_align.o hspfilter_collector.o hspfilter_besthit.o hspfilter_culling.o link_hsps.o lookup_util.o lookup_wrap.o matrix_freq_ratios.o ncbi_std.o ncbi_math.o blast_encoding.o pattern.o phi_extend.o phi_gapalign.o phi_lookup.o blast_parameters.o blast_posit.o blast_program.o blast_query_info.o blast_tune.o blast_sw.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o blast_traceback_mt_priv.o blast_hspstream_mt_utils.o boost_erf.o jumper.o hspfilter_mapper.o spliced_hits.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libblast.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libblast.a /bin/ln -f .blast.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.blast.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/core' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/core' /usr/pkg/bin/gmake -C dbindex -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -w -j3 --jobserver-auth=14,15 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -w -j3 --jobserver-auth=14,15 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/dbindex/dbindex.cpp: In function 'const ncbi::blastdbindex::SIndexHeader ncbi::blastdbindex::ReadIndexHeader(void*) [with bool LEGACY = true]': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/dbindex/dbindex.cpp:306:19: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] unsigned long tmp; ^~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp: In member function 'std::__cxx11::string ncbi::blastdbindex::CSubjectMap_Factory_Base::extractSeqVector(ncbi::blastdbindex::CSubjectMap_Factory_Base::TSeqData&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:658:53: warning: 'std::__cxx11::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::TGetTitleFlags)' is deprecated [-Wdeprecated-declarations] string idstr = objects::sequence::GetTitle( bsh ); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:42:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objmgr/util/sequence.hpp:289:8: note: declared here string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0); ^~~~~~~~ gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/dbindex/dbindex_search.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/dbindex/dbindex.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp -o sequence_istream_fasta.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp -o sequence_istream_bdb.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/dbindex/dbindex.cpp -o dbindex.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp -o dbindex_factory.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/dbindex/dbindex_search.cpp -o dbindex_search.o /bin/rm -f libxalgoblastdbindex.a .libxalgoblastdbindex.a.stamp ar cr libxalgoblastdbindex.a sequence_istream_fasta.o sequence_istream_bdb.o dbindex.o dbindex_factory.o dbindex_search.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgoblastdbindex.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxalgoblastdbindex.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxalgoblastdbindex.a /bin/ln -f .xalgoblastdbindex.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xalgoblastdbindex.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' /usr/pkg/bin/gmake -C makeindex -w -j3 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/dbindex/makeindex TMPL=makeindex -w -j3 --jobserver-auth=16,17 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/dbindex/makeindex/main.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/dbindex/makeindex/main.cpp -o main.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp -o mkindex_app.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O main.o mkindex_app.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -lxalgoblastdbindex-static -lblast-static -lcomposition_adjustment-static -lseqdb-static -lblastdb-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxobjutil-static -ltables-static -lconnect-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -llmdb -lpthread -lz -lbz2 -llzo2 -lz -lm -lpthread -o makembindex strip makembindex /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f makembindex /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin /bin/ln -f makembindex /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/makembindex gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' /usr/pkg/bin/gmake -C dbindex_search -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/dbindex_search' /usr/pkg/bin/gmake -C api -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/api' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api TMPL=xblast -w -j3 --jobserver-auth=14,15 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/api' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api TMPL=xblast -w -j3 --jobserver-auth=14,15 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/api' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/magicblast.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/magicblast_options.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/deltablast.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/deltablast_options.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/cdd_pssm_input.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/seedtop.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/rpsblast_local.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/subj_ranges_set.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/winmask_filter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/split_query_blk.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/split_query_aux_priv.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/split_query_cxx.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_dbindex.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/effsearchspace_calc.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/objmgrfree_query_data.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/objmgr_query_data.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/query_data.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/remote_search.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_results.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/local_search.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/uniform_search.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/traceback_stage.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/prelim_stage.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/setup_factory.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/search_strategy.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/rps_aux.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/dust_filter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/version.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blastp_kmer_options.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_advprot_options.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_aux_priv.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/msa_pssm_input.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/psi_pssm_input.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/psiblast_iteration.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/psiblast_impl.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/psiblast.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/local_db_adapter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/psibl2seq.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_mtlock.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/repeats_filter_cxx.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_objmgr_tools.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/bl2seq.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/seqsrc_query_factory.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/seqsrc_seqdb.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/seqsrc_multiseq.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/remote_blast.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/local_blast.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/pssm_engine.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/phiblast_prot_options.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/phiblast_nucl_options.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/rpstblastn_options.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/tblastn_options.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/tblastx_options.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blastx_options.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_rps_options.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/psiblast_options.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_prot_options.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/disc_nucl_options.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_nucl_options.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_seqalign.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_setup_cxx.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_options_builder.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_options_cxx.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_aux.cpp. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/spliced_hits.c"' > .core_spliced_hits.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/hspfilter_mapper.c"' > .core_hspfilter_mapper.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/jumper.c"' > .core_jumper.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/boost_erf.c"' > .core_boost_erf.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_hspstream_mt_utils.c"' > .core_blast_hspstream_mt_utils.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_traceback_mt_priv.c"' > .core_blast_traceback_mt_priv.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/index_ungapped.c"' > .core_index_ungapped.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/gencode_singleton.c"' > .core_gencode_singleton.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/split_query.c"' > .core_split_query.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_dynarray.c"' > .core_blast_dynarray.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_sw.c"' > .core_blast_sw.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_tune.c"' > .core_blast_tune.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_query_info.c"' > .core_blast_query_info.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_program.c"' > .core_blast_program.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_posit.c"' > .core_blast_posit.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_parameters.c"' > .core_blast_parameters.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/phi_lookup.c"' > .core_phi_lookup.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/phi_gapalign.c"' > .core_phi_gapalign.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/phi_extend.c"' > .core_phi_extend.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/pattern.c"' > .core_pattern.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_encoding.c"' > .core_blast_encoding.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/ncbi_math.c"' > .core_ncbi_math.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/ncbi_std.c"' > .core_ncbi_std.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/matrix_freq_ratios.c"' > .core_matrix_freq_ratios.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/lookup_wrap.c"' > .core_lookup_wrap.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/lookup_util.c"' > .core_lookup_util.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/link_hsps.c"' > .core_link_hsps.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/hspfilter_culling.c"' > .core_hspfilter_culling.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/hspfilter_besthit.c"' > .core_hspfilter_besthit.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/hspfilter_collector.c"' > .core_hspfilter_collector.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/greedy_align.c"' > .core_greedy_align.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/gapinfo.c"' > .core_gapinfo.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_util.c"' > .core_blast_util.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_traceback.c"' > .core_blast_traceback.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_stat.c"' > .core_blast_stat.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_setup.c"' > .core_blast_setup.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_seqsrc.c"' > .core_blast_seqsrc.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_seg.c"' > .core_blast_seg.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_psi_priv.c"' > .core_blast_psi_priv.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/na_ungapped.c"' > .core_na_ungapped.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_psi.c"' > .core_blast_psi.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_options.c"' > .core_blast_options.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_message.c"' > .core_blast_message.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_nascan.c"' > .core_blast_nascan.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_nalookup.c"' > .core_blast_nalookup.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_aascan.c"' > .core_blast_aascan.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_aalookup.c"' > .core_blast_aalookup.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_lookup.c"' > .core_blast_lookup.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_kappa.c"' > .core_blast_kappa.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_itree.c"' > .core_blast_itree.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_hspstream.c"' > .core_blast_hspstream.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_hits.c"' > .core_blast_hits.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_gapalign.c"' > .core_blast_gapalign.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_filter.c"' > .core_blast_filter.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_extend.c"' > .core_blast_extend.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_engine.c"' > .core_blast_engine.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_diagnostics.c"' > .core_blast_diagnostics.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/aa_ungapped.c"' > .core_aa_ungapped.c Updating dependency information for .core_spliced_hits.c. Updating dependency information for .core_hspfilter_mapper.c. Updating dependency information for .core_jumper.c. Updating dependency information for .core_boost_erf.c. Updating dependency information for .core_blast_hspstream_mt_utils.c. Updating dependency information for .core_blast_traceback_mt_priv.c. Updating dependency information for .core_index_ungapped.c. Updating dependency information for .core_gencode_singleton.c. Updating dependency information for .core_split_query.c. Updating dependency information for .core_blast_dynarray.c. Updating dependency information for .core_blast_sw.c. Updating dependency information for .core_blast_tune.c. Updating dependency information for .core_blast_query_info.c. Updating dependency information for .core_blast_program.c. Updating dependency information for .core_blast_posit.c. Updating dependency information for .core_blast_parameters.c. Updating dependency information for .core_phi_lookup.c. Updating dependency information for .core_phi_gapalign.c. Updating dependency information for .core_phi_extend.c. Updating dependency information for .core_pattern.c. Updating dependency information for .core_blast_encoding.c. Updating dependency information for .core_ncbi_math.c. Updating dependency information for .core_ncbi_std.c. Updating dependency information for .core_matrix_freq_ratios.c. Updating dependency information for .core_lookup_wrap.c. Updating dependency information for .core_lookup_util.c. Updating dependency information for .core_link_hsps.c. Updating dependency information for .core_hspfilter_culling.c. Updating dependency information for .core_hspfilter_besthit.c. Updating dependency information for .core_hspfilter_collector.c. Updating dependency information for .core_greedy_align.c. Updating dependency information for .core_gapinfo.c. Updating dependency information for .core_blast_util.c. Updating dependency information for .core_blast_traceback.c. Updating dependency information for .core_blast_stat.c. Updating dependency information for .core_blast_setup.c. Updating dependency information for .core_blast_seqsrc.c. Updating dependency information for .core_blast_seg.c. Updating dependency information for .core_blast_psi_priv.c. Updating dependency information for .core_na_ungapped.c. Updating dependency information for .core_blast_psi.c. Updating dependency information for .core_blast_options.c. Updating dependency information for .core_blast_message.c. Updating dependency information for .core_blast_nascan.c. Updating dependency information for .core_blast_nalookup.c. Updating dependency information for .core_blast_aascan.c. Updating dependency information for .core_blast_aalookup.c. Updating dependency information for .core_blast_lookup.c. Updating dependency information for .core_blast_kappa.c. Updating dependency information for .core_blast_itree.c. Updating dependency information for .core_blast_hspstream.c. Updating dependency information for .core_blast_hits.c. Updating dependency information for .core_blast_gapalign.c. Updating dependency information for .core_blast_filter.c. Updating dependency information for .core_blast_extend.c. Updating dependency information for .core_blast_engine.c. Updating dependency information for .core_blast_diagnostics.c. Updating dependency information for .core_aa_ungapped.c. rm .core_blast_nascan.c .core_blast_diagnostics.c .core_blast_sw.c .core_split_query.c .core_hspfilter_collector.c .core_blast_query_info.c .core_blast_traceback_mt_priv.c .core_blast_engine.c .core_ncbi_std.c .core_blast_aascan.c .core_blast_posit.c .core_na_ungapped.c .core_blast_hits.c .core_blast_traceback.c .core_matrix_freq_ratios.c .core_boost_erf.c .core_phi_extend.c .core_link_hsps.c .core_phi_lookup.c .core_blast_extend.c .core_jumper.c .core_blast_kappa.c .core_blast_psi.c .core_phi_gapalign.c .core_blast_encoding.c .core_spliced_hits.c .core_blast_gapalign.c .core_pattern.c .core_blast_tune.c .core_blast_setup.c .core_blast_hspstream.c .core_blast_psi_priv.c .core_blast_util.c .core_hspfilter_mapper.c .core_gencode_singleton.c .core_blast_lookup.c .core_lookup_wrap.c .core_blast_filter.c .core_index_ungapped.c .core_blast_message.c .core_aa_ungapped.c .core_hspfilter_culling.c .core_blast_options.c .core_blast_seqsrc.c .core_blast_stat.c .core_blast_parameters.c .core_blast_aalookup.c .core_ncbi_math.c .core_greedy_align.c .core_blast_itree.c .core_blast_hspstream_mt_utils.c .core_hspfilter_besthit.c .core_gapinfo.c .core_lookup_util.c .core_blast_dynarray.c .core_blast_seg.c .core_blast_nalookup.c .core_blast_program.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/aa_ungapped.c"' > .core_aa_ungapped.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_diagnostics.c"' > .core_blast_diagnostics.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_engine.c"' > .core_blast_engine.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_extend.c"' > .core_blast_extend.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_filter.c"' > .core_blast_filter.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_gapalign.c"' > .core_blast_gapalign.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_hits.c"' > .core_blast_hits.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_hspstream.c"' > .core_blast_hspstream.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_itree.c"' > .core_blast_itree.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_kappa.c"' > .core_blast_kappa.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_lookup.c"' > .core_blast_lookup.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_aalookup.c"' > .core_blast_aalookup.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_aascan.c"' > .core_blast_aascan.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_nalookup.c"' > .core_blast_nalookup.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_nascan.c"' > .core_blast_nascan.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_message.c"' > .core_blast_message.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_options.c"' > .core_blast_options.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_psi.c"' > .core_blast_psi.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/na_ungapped.c"' > .core_na_ungapped.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_psi_priv.c"' > .core_blast_psi_priv.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_seg.c"' > .core_blast_seg.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_seqsrc.c"' > .core_blast_seqsrc.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_setup.c"' > .core_blast_setup.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_stat.c"' > .core_blast_stat.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_traceback.c"' > .core_blast_traceback.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_util.c"' > .core_blast_util.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/gapinfo.c"' > .core_gapinfo.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/greedy_align.c"' > .core_greedy_align.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/hspfilter_collector.c"' > .core_hspfilter_collector.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/hspfilter_besthit.c"' > .core_hspfilter_besthit.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/hspfilter_culling.c"' > .core_hspfilter_culling.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/link_hsps.c"' > .core_link_hsps.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/lookup_util.c"' > .core_lookup_util.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/lookup_wrap.c"' > .core_lookup_wrap.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/matrix_freq_ratios.c"' > .core_matrix_freq_ratios.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/ncbi_std.c"' > .core_ncbi_std.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/ncbi_math.c"' > .core_ncbi_math.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_encoding.c"' > .core_blast_encoding.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/pattern.c"' > .core_pattern.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/phi_extend.c"' > .core_phi_extend.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/phi_gapalign.c"' > .core_phi_gapalign.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/phi_lookup.c"' > .core_phi_lookup.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_parameters.c"' > .core_blast_parameters.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_posit.c"' > .core_blast_posit.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_program.c"' > .core_blast_program.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_query_info.c"' > .core_blast_query_info.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_tune.c"' > .core_blast_tune.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_sw.c"' > .core_blast_sw.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_dynarray.c"' > .core_blast_dynarray.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/split_query.c"' > .core_split_query.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/gencode_singleton.c"' > .core_gencode_singleton.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/index_ungapped.c"' > .core_index_ungapped.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_traceback_mt_priv.c"' > .core_blast_traceback_mt_priv.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_hspstream_mt_utils.c"' > .core_blast_hspstream_mt_utils.c echo '#include "/t/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp: In member function 'bool ncbi::blast::CBlastOptionsLocal::Validate() const': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp:387:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation] else ^~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp:396:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' return true; ^~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp: In member function 'char* ncbi::blast::CBlastOptionsHandle::GetFilterString() const': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp:100:36: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] return m_Opts->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp:36: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^~~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp: In member function 'void ncbi::blast::CBlastOptionsHandle::SetFilterString(const char*, bool)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp:106:37: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] m_Opts->SetFilterString(f, clear); /* NCBI_FAKE_WARNING */ ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp:36: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ mp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/boost_erf.c"' > .core_boost_erf.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/jumper.c"' > .core_jumper.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/hspfilter_mapper.c"' > .core_hspfilter_mapper.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/spliced_hits.c"' > .core_spliced_hits.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_aux.cpp -o blast_aux.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_options_cxx.cpp -o blast_options_cxx.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp -o blast_options_local_priv.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_options_builder.cpp -o blast_options_builder.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_setup_cxx.cpp -o blast_setup_cxx.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_seqalign.cpp -o blast_seqalign.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp -o blast_options_handle.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_nucl_options.cpp -o blast_nucl_options.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/disc_nucl_options.cpp -o disc_nucl_options.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_prot_options.cpp -o blast_prot_options.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/psiblast_options.cpp -o psiblast_options.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_rps_options.cpp -o blast_rps_options.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blastx_options.cpp -o blastx_options.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/tblastx_options.cpp -o tblastx_options.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/tblastn_options.cpp -o tblastn_options.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/rpstblastn_options.cpp -o rpstblastn_options.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/phiblast_nucl_options.cpp -o phiblast_nucl_options.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/phiblast_prot_options.cpp -o phiblast_prot_options.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/pssm_engine.cpp -o pssm_engine.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/local_blast.cpp -o local_blast.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/remote_blast.cpp -o remote_blast.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/msa_pssm_input.cpp: In member function 'void ncbi::blast::CPsiBlastInputClustalW::x_ExtractAlignmentData()': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/msa_pssm_input.cpp:376:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while (k < m_Msa->dimensions->query_length && ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /algo/blast/api/seqinfosrc_seqvec.cpp -o seqinfosrc_seqvec.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT 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-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/split_query_blk.cpp -o split_query_blk.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/winmask_filter.cpp -o winmask_filter.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/subj_ranges_set.cpp -o subj_ranges_set.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/rpsblast_local.cpp -o rpsblast_local.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/seedtop.cpp -o seedtop.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biologyIn file included from .core_blast_kappa.c:1:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_kappa.c: In function 'Blast_RedoAlignmentCore_MT': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_kappa.c:3417:11: warning: unused variable 'my_stderr' [-Wunused-variable] FILE *my_stderr = stderr; ^~~~~~~~~ In file included from .core_blast_aalookup.c:1:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_aalookup.c: In function 'BlastAaLookupFinalize': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_aalookup.c:324:13: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] calloc(lookup->backbone_size, sizeof(AaLookupBackboneCell)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/core/ncbi_std.h:40:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/core/blast_aalookup.h:36, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_aalookup.c:31, from .core_blast_aalookup.c:1: /usr/include/stdlib.h:109:7: note: in a call to allocation function 'calloc' declared here void *calloc(size_t, size_t); ^~~~~~ In file included from .core_blast_aalookup.c:1:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_aalookup.c:371:13: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] calloc(lookup->backbone_size, sizeof(AaLookupSmallboneCell)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/core/ncbi_std.h:40:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/core/blast_aalookup.h:36, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_aalookup.c:31, from .core_blast_aalookup.c:1: /usr/include/stdlib.h:109:7: note: in a call to allocation function 'calloc' declared here void *calloc(size_t, size_t); ^~~~~~ /ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/cdd_pssm_input.cpp -o cdd_pssm_input.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/deltablast_options.cpp -o deltablast_options.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/deltablast.cpp -o deltablast.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/magicblast_options.cpp -o magicblast_options.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/magicblast.cpp -o magicblast.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_aa_ungapped.c -o .core_aa_ungapped.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_blast_diagnostics.c -o .core_blast_diagnostics.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_blast_engine.c -o .core_blast_engine.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_blast_extend.c -o .core_blast_extend.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_blast_filter.c -o .core_blast_filter.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_blast_gapalign.c -o .core_blast_gapalign.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_blast_hits.c -o .core_blast_hits.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_blast_hspstream.c -o .core_blast_hspstream.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_blast_itree.c -o .core_blast_itree.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_blast_kappa.c -o .core_blast_kappa.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_blast_lookup.c -o .core_blast_lookup.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_blast_aalookup.c -o .core_blast_aalookup.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_blast_aascan.c -o .core_blast_aascan.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_blast_nalookup.c -o .core_blast_nalookup.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_blast_nascan.c -o .core_blast_nascan.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_blast_message.c -o .core_blast_message.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_blast_options.c -o .core_blast_options.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_blast_psi.c -o .core_blast_psi.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_na_ungapped.c -o .core_na_ungapped.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_blast_psi_priv.c -o .core_blast_psi_priv.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURIn file included from .core_blast_util.c:1:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_util.c: In function 'BlastProgram2Number': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_util.c:306:10: warning: this 'if' clause does not guard... [-Wmisleading-indentation] else if (strcasecmp("mapper", program) == 0) ^~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_util.c:309:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' return 0; ^~~~~~ In file included from .core_link_hsps.c:1:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/link_hsps.c: In function 's_FwdCompareHSPs': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/link_hsps.c:133:10: warning: this 'if' clause does not guard... [-Wmisleading-indentation] else if (h1->context > h2->context) ^~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/link_hsps.c:136:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (h1->query.offset < h2->query.offset) ^~ CE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_blast_seg.c -o .core_blast_seg.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_blast_seqsrc.c -o .core_blast_seqsrc.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_blast_setup.c -o .core_blast_setup.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_blast_stat.c -o .core_blast_stat.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_blast_traceback.c -o .core_blast_traceback.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_blast_util.c -o .core_blast_util.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_gapinfo.c -o .core_gapinfo.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_greedy_align.c -o .core_greedy_align.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_hspfilter_collector.c -o .core_hspfilter_collector.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_hspfilter_besthit.c -o .core_hspfilter_besthit.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_hspfilter_culling.c -o .core_hspfilter_culling.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_link_hsps.c -o .core_link_hsps.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_lookup_util.c -o .core_lookup_util.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_lookup_wrap.c -o .core_lookup_wrap.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_matrix_freq_ratios.c -o .core_matrix_freq_ratios.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 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.core_blast_hspstream.o .core_blast_itree.o .core_blast_kappa.o .core_blast_lookup.o .core_blast_aalookup.o .core_blast_aascan.o .core_blast_nalookup.o .core_blast_nascan.o .core_blast_message.o .core_blast_options.o .core_blast_psi.o .core_na_ungapped.o .core_blast_psi_priv.o .core_blast_seg.o .core_blast_seqsrc.o .core_blast_setup.o .core_blast_stat.o .core_blast_traceback.o .core_blast_util.o .core_gapinfo.o .core_greedy_align.o .core_hspfilter_collector.o .core_hspfilter_besthit.o .core_hspfilter_culling.o .core_link_hsps.o .core_lookup_util.o .core_lookup_wrap.o .core_matrix_freq_ratios.o .core_ncbi_std.o .core_ncbi_math.o .core_blast_encoding.o .core_pattern.o .core_phi_extend.o .core_phi_gapalign.o .core_phi_lookup.o .core_blast_parameters.o .core_blast_posit.o .core_blast_program.o .core_blast_query_info.o .core_blast_tune.o .core_blast_sw.o .core_blast_dynarray.o .core_split_query.o .core_gencode_singleton.o .core_index_ungapped.o .core_blast_traceback_mt_priv.o .core_blast_hspstream_mt_utils.o .core_boost_erf.o .core_jumper.o .core_hspfilter_mapper.o .core_spliced_hits.o blast_aux.o blast_options_cxx.o blast_options_local_priv.o blast_options_builder.o blast_setup_cxx.o blast_seqalign.o blast_options_handle.o blast_nucl_options.o disc_nucl_options.o blast_prot_options.o psiblast_options.o blast_rps_options.o blastx_options.o tblastx_options.o tblastn_options.o rpstblastn_options.o phiblast_nucl_options.o phiblast_prot_options.o pssm_engine.o local_blast.o remote_blast.o seqinfosrc_seqvec.o seqinfosrc_seqdb.o seqinfosrc_bioseq.o seqsrc_multiseq.o seqsrc_seqdb.o seqsrc_query_factory.o bl2seq.o blast_objmgr_tools.o repeats_filter_cxx.o blast_mtlock.o psibl2seq.o local_db_adapter.o psiblast.o psiblast_impl.o psiblast_iteration.o psi_pssm_input.o msa_pssm_input.o psiblast_aux_priv.o blast_aux_priv.o blast_advprot_options.o blastp_kmer_options.o version.o dust_filter.o rps_aux.o search_strategy.o setup_factory.o prelim_stage.o traceback_stage.o uniform_search.o local_search.o blast_results.o remote_search.o query_data.o objmgr_query_data.o objmgrfree_query_data.o bioseq_extract_data_priv.o effsearchspace_calc.o blast_seqinfosrc_aux.o blast_dbindex.o split_query_cxx.o split_query_aux_priv.o split_query_blk.o winmask_filter.o subj_ranges_set.o rpsblast_local.o seedtop.o cdd_pssm_input.o deltablast_options.o deltablast.o magicblast_options.o magicblast.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblast.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxblast.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxblast.a /bin/ln -f .xblast.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xblast.dep rm .core_spliced_hits.c .core_blast_traceback.c .core_hspfilter_collector.c .core_phi_lookup.c .core_blast_aascan.c .core_blast_filter.c .core_blast_itree.c .core_blast_diagnostics.c .core_blast_message.c .core_phi_gapalign.c .core_phi_extend.c .core_blast_psi.c .core_blast_seg.c .core_blast_psi_priv.c .core_pattern.c .core_blast_hspstream_mt_utils.c .core_blast_query_info.c .core_blast_lookup.c .core_blast_hspstream.c .core_blast_engine.c .core_hspfilter_culling.c .core_blast_seqsrc.c .core_lookup_util.c .core_split_query.c .core_blast_stat.c .core_gencode_singleton.c .core_blast_parameters.c .core_blast_aalookup.c .core_boost_erf.c .core_blast_kappa.c .core_blast_program.c .core_blast_traceback_mt_priv.c .core_gapinfo.c .core_greedy_align.c .core_blast_posit.c .core_na_ungapped.c .core_blast_hits.c .core_blast_extend.c .core_matrix_freq_ratios.c .core_ncbi_std.c .core_blast_encoding.c .core_blast_gapalign.c .core_blast_nascan.c .core_hspfilter_mapper.c .core_lookup_wrap.c .core_ncbi_math.c .core_blast_nalookup.c .core_blast_sw.c .core_index_ungapped.c .core_jumper.c .core_blast_options.c .core_link_hsps.c .core_blast_setup.c .core_blast_dynarray.c .core_aa_ungapped.c .core_hspfilter_besthit.c .core_blast_util.c .core_blast_tune.c gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/api' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/api' /usr/pkg/bin/gmake -C proteinkmer -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/proteinkmer TMPL=proteinkmer -w -j3 --jobserver-auth=14,15 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/proteinkmer TMPL=proteinkmer -w -j3 --jobserver-auth=14,15 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:447:0: warning: ignoring #pragma ivdep [-Wunknown-pragmas] #pragma ivdep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp:84:0: warning: ignoring #pragma ivdep [-Wunknown-pragmas] #pragma ivdep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp:91:0: warning: ignoring #pragma ivdep [-Wunknown-pragmas] #pragma ivdep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp:98:0: warning: ignoring #pragma ivdep [-Wunknown-pragmas] #pragma ivdep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp: In member function 'void ncbi::blast::CMinHashFile::GetMinHits(int, int&, std::vector&) const': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp:77:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (hits.size() < numHashes) ~~~~~~~~~~~~^~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp: In function 'void ncbi::neighbor_query(const std::vector >&, const uint64_t*, std::vector >&, ncbi::blast::CMinHashFile&, int, int, double, ncbi::TBlastKmerPrelimScoreVector&, ncbi::BlastKmerStats&, int)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:807:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (last_oid == *i) ~~~~~~~~~^~~~~ gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/proteinkmer/kblastapi.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/proteinkmer/pearson.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/proteinkmer/blastkmeroptions.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/proteinkmer/blastkmer.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/proteinkmer/blastkmer.cpp -o blastkmer.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp -o blastkmerindex.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/proteinkmer/blastkmeroptions.cpp -o blastkmeroptions.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp -o blastkmerresults.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp -o blastkmerutils.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp -o mhfile.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/proteinkmer/pearson.cpp -o pearson.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/proteinkmer/kblastapi.cpp -o kblastapi.o /bin/rm -f libproteinkmer.a .libproteinkmer.a.stamp ar cr libproteinkmer.a blastkmer.o blastkmerindex.o blastkmeroptions.o blastkmerresults.o blastkmerutils.o mhfile.o pearson.o kblastapi.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libproteinkmer.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libproteinkmer.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libproteinkmer.a /bin/ln -f .proteinkmer.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.proteinkmer.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /usr/pkg/bin/gmake -C unit_test -w -j3 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: *** No rule to make target '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' NOTE: skipping project "proteinkmer_unit_test" due to unmet requirements gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /usr/pkg/bin/gmake -C format -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/format' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format TMPL=xblastformat -w -j3 --jobserver-auth=14,15 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/format' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format TMPL=xblastformat -w -j3 --jobserver-auth=14,15 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/blastxml_format.cpp: In function 'void ncbi::s_SeqAlignSetToXMLHits(std::__cxx11::list >&, const ncbi::objects::CSeq_align_set&, ncbi::objects::CScope*, const ncbi::CBlastFormattingMatrix*, const ncbi::TMaskedQueryRegions*, bool, int, int, ncbi::CNcbiOstream*)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/blastxml_format.cpp:501:86: warning: 'ncbi::CObjectOStreamXml::CObjectOStreamXml(ncbi::CNcbiOstream&, bool)' is deprecated [-Wdeprecated-declarations] auto_ptr xml_one_hit_os (new CObjectOStreamXml (one_hit_os,false)); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbiexpt.hpp:42:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/tempstr.hpp:38, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistr.hpp:39, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/blastxml_format.cpp:34: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/serial/objostrxml.hpp:66:26: note: declared here NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut)); ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbimisc.hpp:1118:38: note: in definition of macro 'NCBI_DEPRECATED_CTOR' # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/blastxml_format.cpp: In function 'bool ncbi::s_SerializeAndSplitBy(const ncbi::CSerialObject&, const char*, std::__cxx11::string&, std::__cxx11::string&, bool, bool)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/blastxml_format.cpp:785:89: warning: 'ncbi::CObjectOStreamXml::CObjectOStreamXml(ncbi::CNcbiOstream&, bool)' is deprecated [-Wdeprecated-declarations] auto_ptr xml_one_iter_os(new CObjectOStreamXml (one_iter_ss_os,false)); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbiexpt.hpp:42:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/tempstr.hpp:38, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistr.hpp:39, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/blastxml_format.cpp:34: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/serial/objostrxml.hpp:66:26: note: declared here NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut)); ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbimisc.hpp:1118:38: note: in definition of macro 'NCBI_DEPRECATED_CTOR' # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^~~~ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/blast_format.cpp:49:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/format/data4xmlformat.hpp: In member function 'virtual std::__cxx11::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/format/data4xmlformat.hpp:155:39: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/api/uniform_search.hpp:42, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/format/blast_format.hpp:42, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/blast_format.cpp:37: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^~~~~~~~~~~~~~~ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/blast_format.cpp:51:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/format/data4xml2format.hpp: In member function 'virtual std::__cxx11::string ncbi::CCmdLineBlastXML2ReportData::GetFilterString() const': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/format/data4xml2format.hpp:140:40: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/api/uniform_search.hpp:42, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/format/blast_format.hpp:42, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/blast_format.cpp:37: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^~~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/blast_format.cpp: In member function 'void ncbi::CBlastFormat::x_SplitSeqAlign(ncbi::CConstRef, ncbi::objects::CSeq_align_set&, ncbi::objects::CSeq_align_set&, ncbi::blast::CPsiBlastIterationState::TSeqIds&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/blast_format.cpp:520:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(count >= m_NumSummary) ~~~~~~^~~~~~~~~~~~~~~ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/data4xmlformat.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/format/data4xmlformat.hpp: In member function 'virtual std::__cxx11::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/format/data4xmlformat.hpp:155:39: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/api/uniform_search.hpp:42, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/format/data4xmlformat.hpp:42, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/data4xmlformat.cpp:37: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^~~~~~~~~~~~~~~ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/data4xml2format.cpp:36:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/format/data4xml2format.hpp: In member function 'virtual std::__cxx11::string ncbi::CCmdLineBlastXML2ReportData::GetFilterString() const': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/format/data4xml2format.hpp:140:40: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/api/uniform_search.hpp:42, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/format/data4xml2format.hpp:42, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/data4xml2format.cpp:36: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^~~~~~~~~~~~~~~ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/blast_async_format.cpp: In member function 'virtual void* CBlastAsyncFormatThread::Main()': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/blast_async_format.cpp:122:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (m_ResultsMap.size() != currNum) ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/format' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/blast_async_format.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/sam.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/vecscreen_run.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/build_archive.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/data4xml2format.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/data4xmlformat.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/blast_format.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/blastxml2_format.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/blastxml_format.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/blastfmtutil.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/blastfmtutil.cpp -o blastfmtutil.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/blastxml_format.cpp -o blastxml_format.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/blastxml2_format.cpp -o blastxml2_format.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/blast_format.cpp -o blast_format.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/data4xmlformat.cpp -o data4xmlformat.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/data4xml2format.cpp -o data4xml2format.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/build_archive.cpp -o build_archive.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/vecscreen_run.cpp -o vecscreen_run.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/sam.cpp -o sam.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/blast_async_format.cpp -o blast_async_format.o /bin/rm -f libxblastformat.a .libxblastformat.a.stamp ar cr libxblastformat.a blastfmtutil.o blastxml_format.o blastxml2_format.o blast_format.o data4xmlformat.o data4xml2format.o build_archive.o vecscreen_run.o sam.o blast_async_format.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblastformat.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxblastformat.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxblastformat.a /bin/ln -f .xblastformat.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xblastformat.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/format' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/format' /usr/pkg/bin/gmake -C blastinput -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/demo/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/demo/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/demo/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT demo/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/demo/Makefile gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput TMPL=blastinput -w -j3 --jobserver-auth=14,15 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput TMPL=blastinput -w -j3 --jobserver-auth=14,15 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/kblastp_args.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/igblastn_args.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/blastx_args.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/blastn_args.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/blastp_args.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/cmdline_flags.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/blast_args.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/blast_input.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/blast_input.cpp -o blast_input.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp -o blast_fasta_input.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp -o blast_scope_src.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/blast_args.cpp -o blast_args.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/cmdline_flags.cpp -o cmdline_flags.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp -o blast_input_aux.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/blastp_args.cpp -o blastp_args.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/blastn_args.cpp -o blastn_args.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp -o rmblastn_args.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/blastx_args.cpp -o blastx_args.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp -o tblastn_args.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp -o tblastx_args.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp -o psiblast_args.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp -o rpsblast_args.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp -o rpstblastn_args.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/igblastn_args.cpp -o igblastn_args.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp -o igblastp_args.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp -o deltablast_args.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp -o magicblast_args.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/kblastp_args.cpp -o kblastp_args.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp -o blast_asn1_input.o /bin/rm -f libblastinput.a .libblastinput.a.stamp ar cr libblastinput.a blast_input.o blast_fasta_input.o blast_scope_src.o blast_args.o cmdline_flags.o blast_input_aux.o blastp_args.o blastn_args.o rmblastn_args.o blastx_args.o tblastn_args.o tblastx_args.o psiblast_args.o rpsblast_args.o rpstblastn_args.o igblastn_args.o igblastp_args.o deltablast_args.o magicblast_args.o kblastp_args.o blast_asn1_input.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastinput.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libblastinput.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libblastinput.a /bin/ln -f .blastinput.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.blastinput.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' /usr/pkg/bin/gmake -C unit_test -w -j3 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test' /usr/pkg/bin/gmake -C demo -w -j3 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/demo' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' /usr/pkg/bin/gmake -C blast_sra_input -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/blast_sra_input' /usr/pkg/bin/gmake -C igblast -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/igblast' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/igblast TMPL=igblast -w -j3 --jobserver-auth=14,15 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/igblast' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/igblast TMPL=igblast -w -j3 --jobserver-auth=14,15 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/igblast' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/igblast/igblast.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/igblast/igblast.cpp -o igblast.o /bin/rm -f libigblast.a .libigblast.a.stamp ar cr libigblast.a igblast.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libigblast.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libigblast.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libigblast.a /bin/ln -f .igblast.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.igblast.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/igblast' /usr/pkg/bin/gmake -C gumbel_params -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/gumbel_params' /usr/pkg/bin/gmake -C unit_tests -w -j3 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/pkg/bin/gmake -C blast_format -w -j3 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. NOTE: Skipping project blast_format due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format' /usr/pkg/bin/gmake -C blastdb -w -j3 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. NOTE: Skipping project blastdb due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb' /usr/pkg/bin/gmake -C seqdb_reader -w -j3 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. NOTE: Skipping project seqdb_reader due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader' /usr/pkg/bin/gmake -C api -w -j3 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. NOTE: Skipping project api due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/unit_tests/api TMPL=blast_unit_test_util -w -j3 --jobserver-auth=18,19 mark-as-disabled gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/unit_tests/api TMPL=seqalign_util -w -j3 --jobserver-auth=18,19 mark-as-disabled gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast' /usr/pkg/bin/gmake -C segmask -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/segmask' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/segmask TMPL=xalgosegmask -w -j3 --jobserver-auth=12,13 export-headers gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/segmask' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/segmask TMPL=xalgosegmask -w -j3 --jobserver-auth=12,13 all gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/segmask' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/segmask/segmask.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/segmask/segmask.cpp -o segmask.o /bin/rm -f libxalgosegmask.a .libxalgosegmask.a.stamp ar cr libxalgosegmask.a segmask.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgosegmask.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxalgosegmask.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxalgosegmask.a /bin/ln -f .xalgosegmask.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xalgosegmask.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/segmask' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/segmask' /usr/pkg/bin/gmake -C align -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/align' /usr/pkg/bin/gmake -C structure -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/structure' /usr/pkg/bin/gmake -C ms -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/ms' /usr/pkg/bin/gmake -C gnomon -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/gnomon' /usr/pkg/bin/gmake -C tree -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/tree' /usr/pkg/bin/gmake -C phy_tree -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/phy_tree' /usr/pkg/bin/gmake -C seqqa -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/seqqa' /usr/pkg/bin/gmake -C cobalt -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/cobalt' /usr/pkg/bin/gmake -C text -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/text' /usr/pkg/bin/gmake -C volume_merge -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/volume_merge' /usr/pkg/bin/gmake -C primer -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/primer' /usr/pkg/bin/gmake -C id_mapper -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/id_mapper' gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo' /usr/pkg/bin/gmake -C misc -w -j3 --jobserver-auth=8,9 all_r || exit 5 gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build' gmake[2]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/clog/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/grid_cgi/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/xmlwrapp/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/clog/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/clog/Makefile.in test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/xmlwrapp/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/xmlwrapp/Makefile.in test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/grid_cgi/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/grid_cgi/Makefile.in /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/eutils_client/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/hydra_client/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/discrepancy/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/hydra_client/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/hydra_client/Makefile.in test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/eutils_client/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/eutils_client/Makefile.in test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/discrepancy/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/discrepancy/Makefile.in /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/xmlreaders/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/hgvs/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/netstorage/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/xmlreaders/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/xmlreaders/Makefile.in test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/netstorage/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/netstorage/Makefile.in /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/jsonwrapp/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/biosample_util/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/hgvs/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/hgvs/Makefile.in test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/biosample_util/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/biosample_util/Makefile.in test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/jsonwrapp/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/jsonwrapp/Makefile.in /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/data_loaders_util/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/lapackwrapp/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/pmcidconv_client/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/data_loaders_util/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/data_loaders_util/Makefile.in test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/lapackwrapp/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/lapackwrapp/Makefile.in /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/grpc_integration/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/pmcidconv_client/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/pmcidconv_client/Makefile.in /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/cgi_redirect/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/grpc_integration/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/grpc_integration/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT clog/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT grid_cgi/Makefile test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/cgi_redirect/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/cgi_redirect/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT xmlwrapp/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/grid_cgi/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/clog/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/xmlwrapp/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT eutils_client/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT hydra_client/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT discrepancy/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/discrepancy/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT xmlreaders/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/eutils_client/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/hydra_client/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT hgvs/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT netstorage/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/xmlreaders/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT jsonwrapp/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/hgvs/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/netstorage/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT biosample_util/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT data_loaders_util/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/jsonwrapp/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/biosample_util/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT lapackwrapp/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT pmcidconv_client/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/data_loaders_util/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/lapackwrapp/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT grpc_integration/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT cgi_redirect/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/pmcidconv_client/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/grpc_integration/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/cgi_redirect/Makefile /usr/pkg/bin/gmake -C third_party -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/third_party' /usr/pkg/bin/gmake -C third_party_static -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. NOTE: Skipping project third_party_static due to unmet requirements: -DLL gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/third_party_static' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Nothing to be done for 'mark-as-disabled_r'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/third_party_static' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/third_party_static' /usr/pkg/bin/gmake -C clog -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/clog' /usr/pkg/bin/gmake -C grid_cgi -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/grid_cgi' /usr/pkg/bin/gmake -C xmlwrapp -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/xmlwrapp' /usr/pkg/bin/gmake -C eutils_client -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/eutils_client' /usr/pkg/bin/gmake -C hydra_client -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/hydra_client' /usr/pkg/bin/gmake -C discrepancy -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/discrepancy' /usr/pkg/bin/gmake -C xmlreaders -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/xmlreaders' /usr/pkg/bin/gmake -C hgvs -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/hgvs' /usr/pkg/bin/gmake -C netstorage -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/netstorage' /usr/pkg/bin/gmake -C jsonwrapp -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/jsonwrapp' /usr/pkg/bin/gmake -C biosample_util -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/biosample_util' /usr/pkg/bin/gmake -C data_loaders_util -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/data_loaders_util' /usr/pkg/bin/gmake -C lapackwrapp -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/lapackwrapp' /usr/pkg/bin/gmake -C pmcidconv_client -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/pmcidconv_client' /usr/pkg/bin/gmake -C grpc_integration -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/grpc_integration' NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/pkg/bin/gmake -C cgi_redirect -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/cgi_redirect' gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc' /usr/pkg/bin/gmake -C gui -w -j3 --jobserver-auth=8,9 all_r || exit 5 gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build' gmake[2]: warning: -jN forced in submake: disabling jobserver mode. gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/gui' /usr/pkg/bin/gmake -C app -w -j3 --jobserver-auth=8,9 all_r || exit 5 gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build' gmake[2]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/asn2asn/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/asn2fasta/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/asn2flat/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/asn2asn/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/asn2asn/Makefile.in test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/asn2fasta/Makefile.in || /bin/cp -p 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/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT streamtest/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/annotwriter/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/compart/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT lds2_indexer/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT discrepancy_report/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/lds2_indexer/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/streamtest/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT biosample_chk/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT gap_stats/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/gap_stats/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/discrepancy_report/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT table2asn/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/biosample_chk/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT srcchk/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT tableval/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/table2asn/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT ncbi_encrypt/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/srcchk/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT ssub_fork/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/tableval/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT asn_cache/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/ncbi_encrypt/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT magicblast/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/ssub_fork/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT multipattern/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/asn_cache/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/magicblast/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/multipattern/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT prt2fsm/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT pub_report/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT prot_match/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/pub_report/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/prot_match/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/prt2fsm/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT gff_deconcat/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT sub_fuse/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT split_cache/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/gff_deconcat/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT wig2table/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/split_cache/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/sub_fuse/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT netcache/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT rmblastn/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/wig2table/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT dblb/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/netcache/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT tls/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/rmblastn/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/dblb/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT idfetch/Makefile /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT pubseq_gateway/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/tls/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/idfetch/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/pubseq_gateway/Makefile /usr/pkg/bin/gmake -C asn2asn -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/asn2asn' /usr/pkg/bin/gmake -C asn2fasta -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/asn2fasta' /usr/pkg/bin/gmake -C asn2flat -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/asn2flat' /usr/pkg/bin/gmake -C asnval -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/asnval' /usr/pkg/bin/gmake -C asn_cleanup -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/asn_cleanup' /usr/pkg/bin/gmake -C id1_fetch -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/id1_fetch' /usr/pkg/bin/gmake -C blast -w -j3 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/blast/Makefile.legacy_blast builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/blast -w -j3 --jobserver-auth=16,17 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/blast/legacy_blast.pl /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin /bin/ln -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/blast/legacy_blast.pl /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/legacy_blast.pl gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/blast/Makefile.update_blastdb builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/blast -w -j3 --jobserver-auth=16,17 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/blast/update_blastdb.pl /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin /bin/ln -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/blast/update_blastdb.pl /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/update_blastdb.pl gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/blast/Makefile.get_species_taxids builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/blast -w -j3 --jobserver-auth=16,17 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/blast/get_species_taxids.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin /bin/ln -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/blast/get_species_taxids.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/get_species_taxids.sh gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/blast TMPL=blast_app_util -w -j3 --jobserver-auth=14,15 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/blast TMPL=blast_app_util -w -j3 --jobserver-auth=14,15 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/blast/blast_app_util.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/blast/blast_app_util.cpp -o blast_app_util.o /bin/rm -f libblast_app_util.a .libblast_app_util.a.stamp ar cr libblast_app_util.a blast_app_util.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_app_util.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libblast_app_util.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libblast_app_util.a /bin/ln -f .blast_app_util.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.blast_app_util.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/blast TMPL=blastp -w -j3 --jobserver-auth=14,15 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. ld: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxser-static.a(objostrasn.o): in function `ncbi::CObjectOStreamAsn::CopyBitString(ncbi::CObjectIStream&)': (.text+0x7828): relocation truncated to fit: GPREL16 against symbol `bm::all_set::_block' defined in .bss._ZN2bm7all_setILb1EE6_blockE[_ZN2bm7all_setILb1EE6_blockE] section in blastp_app.o ld: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxser-static.a(objostrasn.o): in function `ncbi::CObjectOStreamAsn::WriteBitString(bm::bvector > > const&)': (.text+0x7ce4): relocation truncated to fit: GPREL16 against symbol `bm::all_set::_block' defined in .bss._ZN2bm7all_setILb1EE6_blockE[_ZN2bm7all_setILb1EE6_blockE] section in blastp_app.o ld: (.text+0x7e2c): relocation truncated to fit: GPREL16 against symbol `bm::all_set::_block' defined in .bss._ZN2bm7all_setILb1EE6_blockE[_ZN2bm7all_setILb1EE6_blockE] section in blastp_app.o ld: (.text+0x7f24): relocation truncated to fit: GPREL16 against symbol `bm::all_set::_block' defined in .bss._ZN2bm7all_setILb1EE6_blockE[_ZN2bm7all_setILb1EE6_blockE] section in blastp_app.o ld: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxser-static.a(objostrasn.o): in function `_GLOBAL__sub_I_objostrasn.cpp': (.text.startup+0x90): relocation truncated to fit: GPREL16 against symbol `guard variable for bm::all_set::_block' defined in .sbss._ZGVN2bm7all_setILb1EE6_blockE[_ZGVN2bm7all_setILb1EE6_blockE] section in blastp_app.o ld: (.text.startup+0xa0): relocation truncated to fit: GPREL16 against symbol `guard variable for bm::globals::_bo' defined in .sbss._ZGVN2bm7globalsILb1EE3_boE[_ZGVN2bm7globalsILb1EE3_boE] section in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libseq-static.a(seqtable__.o) ld: (.text.startup+0xc0): relocation truncated to fit: GPREL16 against symbol `bm::globals::_bo' defined in .sbss._ZN2bm7globalsILb1EE3_boE[_ZN2bm7globalsILb1EE3_boE] section in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libseq-static.a(seqtable__.o) ld: (.text.startup+0xdc): relocation truncated to fit: GPREL16 against symbol `bm::all_set::_block' defined in .bss._ZN2bm7all_setILb1EE6_blockE[_ZN2bm7all_setILb1EE6_blockE] section in blastp_app.o ld: (.text.startup+0x10c): relocation truncated to fit: GPREL16 against symbol `bm::all_set::_block' defined in .bss._ZN2bm7all_setILb1EE6_blockE[_ZN2bm7all_setILb1EE6_blockE] section in blastp_app.o ld: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxser-static.a(objistrasn.o): in function `ncbi::CObjectIStreamAsn::SkipString(ncbi::EStringType)': (.text+0x5b08): relocation truncated to fit: GPREL16 against symbol `ncbi::CNcbiEmptyString::m_Str[abi:cxx11]' defined in .sbss section in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxncbi-static.a(ncbistr.o) ld: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxser-static.a(objistrasn.o): in function `void bm::for_each_nzblock > >::block_zero_func>(unsigned int***, unsigned int, bm::blocks_manager > >::block_zero_func&)': (.text._ZN2bm16for_each_nzblockIjNS_14blocks_managerINS_9mem_allocINS_15block_allocatorENS_13ptr_allocatorENS_10alloc_poolIS3_S4_EEEEE15block_zero_funcEEEvPPPT_jRT0_[_ZN2bm16for_each_nzblockIjNS_14blocks_managerINS_9mem_allocINS_15block_allocatorENS_13ptr_allocatorENS_10alloc_poolIS3_S4_EEEEE15block_zero_funcEEEvPPPT_jRT0_]+0x38): additional relocation overflows omitted from the output gmake[5]: *** [/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.app:156: blastp] Error 1 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/blast/blastp_app.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.8 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/blast/blastp_app.cpp -o blastp_app.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O blastp_app.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxobjedit-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lz -lm -lpthread -o blastp gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' FAILED: src/app/blast/Makefile.blastp.app gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /bin/rm -f blastp .blastp.stamp gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' gmake[4]: *** [/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.meta_l:306: all.nonusr] Error 2 gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' gmake[3]: *** [/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.meta_l:263: all_l.real] Error 2 gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' gmake[2]: *** [/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.meta_r:41: all_r.real] Error 5 gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app' gmake[1]: *** [/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.meta_r:41: all_r.real] Error 5 gmake[1]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build' gmake: *** [Makefile:24: all] Error 2 *** Error code 2 Stop. make[1]: stopped in /usr/pkgsrc/biology/ncbi-blast+ *** Error code 1 Stop. make: stopped in /usr/pkgsrc/biology/ncbi-blast+