=> Bootstrap dependency digest>=20010302: found digest-20190127 => Checksum SHA1 OK for htslib-1.12.tar.bz2 => Checksum RMD160 OK for htslib-1.12.tar.bz2 => Checksum SHA512 OK for htslib-1.12.tar.bz2 ===> Installing dependencies for htslib-1.12 ========================================================================== The following variables will affect the build process of this package, htslib-1.12. Their current value is shown below: * KRB5_DEFAULT = heimdal * SSLBASE = /usr * SSLCERTBUNDLE (not defined) * SSLCERTS = /etc/openssl/certs * SSLDIR = /etc/openssl * SSLKEYS = /etc/openssl/private Based on these variables, the following variables have been set: * KRB5BASE (defined, but empty) * KRB5_TYPE = heimdal You may want to abort the process now with CTRL-C and change the value of variables in the first group before continuing. Be sure to run `/usr/bin/make clean' after the changes. ========================================================================== => Tool dependency automake>=1.9: found automake-1.16.3 => Tool dependency autoconf>=2.58: found autoconf-2.71 => Tool dependency bash-[0-9]*: found bash-5.1.4 => Tool dependency gmake>=3.81: found gmake-4.2.1nb1 => Tool dependency perl>=5.0: found perl-5.32.1 => Build dependency cwrappers>=20150314: found cwrappers-20180325 => Full dependency curl>=7.70.0nb2: found curl-7.75.0 ===> Skipping vulnerability checks. WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found. WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'. ===> Overriding tools for htslib-1.12 ===> Extracting for htslib-1.12 ===> Patching for htslib-1.12 ===> Creating toolchain wrappers for htslib-1.12 ===> Configuring for htslib-1.12 => Substituting "version" in configure.ac cd /tmp/pkgbuild/biology/htslib/work.sparc64/htslib-1.12 && autoreconf -if => Modifying GNU configure scripts to avoid --recheck => Replacing config-guess with pkgsrc versions => Replacing config-sub with pkgsrc versions => Replacing install-sh with pkgsrc version => Replacing Perl interpreter in test/*.pl. => Adding run-time search paths to pkg-config files. checking for sparc64--netbsd-gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for sparc64--netbsd-ranlib... no checking for ranlib... ranlib checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for C compiler warning flags... -Wall checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking shared library type for sparc64--netbsd... plain .so checking whether the compiler accepts -fvisibility=hidden... yes checking build system type... sparc64--netbsd checking host system type... sparc64--netbsd checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/param.h... yes checking for getpagesize... yes checking for working mmap... yes checking for gmtime_r... yes checking for fsync... yes checking for drand48... yes checking for srand48_deterministic... no checking for gcc options needed to detect all undeclared functions... none needed checking whether fdatasync is declared... yes checking for fdatasync... yes checking for library containing log... -lm checking for zlib.h... yes checking for inflate in -lz... yes checking for library containing recv... none required checking for bzlib.h... yes checking for BZ2_bzBuffToBuffCompress in -lbz2... yes checking for lzma.h... yes checking for lzma_easy_buffer_encode in -llzma... yes checking whether htscodecs files are present... yes checking for libdeflate.h... no checking for libdeflate_deflate_compress in -ldeflate... no checking for curl_easy_pause in -lcurl... yes checking for CCHmac... no checking for library containing HMAC... -lcrypto checking for library containing regcomp... none required checking whether PTHREAD_MUTEX_RECURSIVE is declared... yes configure: creating ./config.status config.status: creating config.mk config.status: creating htscodecs.mk config.status: creating htslib.pc.tmp config.status: creating config.h