=> Bootstrap dependency digest>=20211023: found digest-20220214 ===> Skipping vulnerability checks. WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found. WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'. ===> Building for htslib-1.16 gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -c -o kfunc.o kfunc.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -c -o kstring.o kstring.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -c -o bcf_sr_sort.o bcf_sr_sort.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -c -o bgzf.o bgzf.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -c -o errmod.o errmod.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -c -o faidx.o faidx.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -c -o header.o header.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -c -o hfile.o hfile.c echo '#define HTS_VERSION_TEXT "1.16"' > version.h echo '#define HTS_CC "gcc"' > config_vars.h echo '#define HTS_CPPFLAGS "-I/usr/include -I/usr/pkg/include -I/usr/include/krb5"' >> config_vars.h echo '#define HTS_CFLAGS "-Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden"' >> config_vars.h echo '#define HTS_LDFLAGS "-L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -fvisibility=hidden "' >> config_vars.h echo '#define HTS_LIBS "-llzma -lbz2 -lz -lm -lcurl -lcrypto"' >> config_vars.h gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -c -o hts.o hts.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -c -o hts_expr.o hts_expr.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -c -o hts_os.o hts_os.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -c -o md5.o md5.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -c -o multipart.o multipart.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -c -o probaln.o probaln.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -c -o realn.o realn.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -c -o regidx.o regidx.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -c -o region.o region.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -c -o sam.o sam.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -c -o synced_bcf_reader.o synced_bcf_reader.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -c -o vcf_sweep.o vcf_sweep.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -c -o tbx.o tbx.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -c -o textutils.o textutils.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -c -o thread_pool.o thread_pool.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -c -o vcf.o vcf.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -c -o vcfutils.o vcfutils.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -c -o cram/cram_codecs.o cram/cram_codecs.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -c -o cram/cram_decode.o cram/cram_decode.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -c -o cram/cram_encode.o cram/cram_encode.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -c -o cram/cram_external.o cram/cram_external.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -c -o cram/cram_index.o cram/cram_index.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -c -o cram/cram_io.o cram/cram_io.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -c -o cram/cram_stats.o cram/cram_stats.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -c -o cram/mFILE.o cram/mFILE.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -c -o cram/open_trace_file.o cram/open_trace_file.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -c -o cram/pooled_alloc.o cram/pooled_alloc.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -c -o cram/string_alloc.o cram/string_alloc.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -c -o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/arith_dynamic.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -c -o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/fqzcomp_qual.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -c -o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/htscodecs.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -c -o htscodecs/htscodecs/pack.o htscodecs/htscodecs/pack.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -c -o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static4x16pr.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -c -o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static32x16pr.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -c -o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rANS_static.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -c -o htscodecs/htscodecs/rle.o htscodecs/htscodecs/rle.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -c -o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/tokenise_name3.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -c -o htscodecs/htscodecs/utils.o htscodecs/htscodecs/utils.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -c -o hfile_libcurl.o hfile_libcurl.c hfile_libcurl.c: In function 'libcurl_open': hfile_libcurl.c:1335:9: warning: 'CURLINFO_CONTENT_LENGTH_DOWNLOAD' is deprecated: since 7.55.0. Use CURLINFO_CONTENT_LENGTH_DOWNLOAD_T [-Wdeprecated-declarations] In file included from hfile_libcurl.c:47:0: /tmp/pkgbuild/biology/htslib/work.sparc/.buildlink/include/curl/curl.h:2853:3: note: declared here gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -c -o hfile_gcs.o hfile_gcs.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -c -o hfile_s3.o hfile_s3.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -c -o hfile_s3_write.o hfile_s3_write.c ar -rc libhts.a kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/utils.o hfile_libcurl.o hfile_gcs.o hfile_s3.o hfile_s3_write.o ranlib libhts.a gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fpic -c -o kfunc.pico kfunc.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fpic -c -o kstring.pico kstring.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fpic -c -o bcf_sr_sort.pico bcf_sr_sort.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fpic -c -o bgzf.pico bgzf.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fpic -c -o errmod.pico errmod.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fpic -c -o faidx.pico faidx.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fpic -c -o header.pico header.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fpic -c -o hfile.pico hfile.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fpic -c -o hts.pico hts.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fpic -c -o hts_expr.pico hts_expr.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fpic -c -o hts_os.pico hts_os.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fpic -c -o md5.pico md5.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fpic -c -o multipart.pico multipart.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fpic -c -o probaln.pico probaln.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fpic -c -o realn.pico realn.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fpic -c -o regidx.pico regidx.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fpic -c -o region.pico region.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fpic -c -o sam.pico sam.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fpic -c -o synced_bcf_reader.pico synced_bcf_reader.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fpic -c -o vcf_sweep.pico vcf_sweep.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fpic -c -o tbx.pico tbx.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fpic -c -o textutils.pico textutils.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fpic -c -o thread_pool.pico thread_pool.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fpic -c -o vcf.pico vcf.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fpic -c -o vcfutils.pico vcfutils.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fpic -c -o cram/cram_codecs.pico cram/cram_codecs.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fpic -c -o cram/cram_decode.pico cram/cram_decode.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fpic -c -o cram/cram_encode.pico cram/cram_encode.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fpic -c -o cram/cram_external.pico cram/cram_external.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fpic -c -o cram/cram_index.pico cram/cram_index.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fpic -c -o cram/cram_io.pico cram/cram_io.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fpic -c -o cram/cram_stats.pico cram/cram_stats.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fpic -c -o cram/mFILE.pico cram/mFILE.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fpic -c -o cram/open_trace_file.pico cram/open_trace_file.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fpic -c -o cram/pooled_alloc.pico cram/pooled_alloc.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fpic -c -o cram/string_alloc.pico cram/string_alloc.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fpic -c -o htscodecs/htscodecs/arith_dynamic.pico htscodecs/htscodecs/arith_dynamic.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fpic -c -o htscodecs/htscodecs/fqzcomp_qual.pico htscodecs/htscodecs/fqzcomp_qual.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fpic -c -o htscodecs/htscodecs/htscodecs.pico htscodecs/htscodecs/htscodecs.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fpic -c -o htscodecs/htscodecs/pack.pico htscodecs/htscodecs/pack.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fpic -c -o htscodecs/htscodecs/rANS_static4x16pr.pico htscodecs/htscodecs/rANS_static4x16pr.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fpic -c -o htscodecs/htscodecs/rANS_static32x16pr.pico htscodecs/htscodecs/rANS_static32x16pr.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fpic -c -o htscodecs/htscodecs/rANS_static.pico htscodecs/htscodecs/rANS_static.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fpic -c -o htscodecs/htscodecs/rle.pico htscodecs/htscodecs/rle.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fpic -c -o htscodecs/htscodecs/tokenise_name3.pico htscodecs/htscodecs/tokenise_name3.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fpic -c -o htscodecs/htscodecs/utils.pico htscodecs/htscodecs/utils.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fpic -c -o hfile_libcurl.pico hfile_libcurl.c hfile_libcurl.c: In function 'libcurl_open': hfile_libcurl.c:1335:9: warning: 'CURLINFO_CONTENT_LENGTH_DOWNLOAD' is deprecated: since 7.55.0. Use CURLINFO_CONTENT_LENGTH_DOWNLOAD_T [-Wdeprecated-declarations] In file included from hfile_libcurl.c:47:0: /tmp/pkgbuild/biology/htslib/work.sparc/.buildlink/include/curl/curl.h:2853:3: note: declared here gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fpic -c -o hfile_gcs.pico hfile_gcs.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fpic -c -o hfile_s3.pico hfile_s3.c gcc -Wall -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fvisibility=hidden -I. -I/usr/include -I/usr/pkg/include -I/usr/include/krb5 -fpic -c -o hfile_s3_write.pico hfile_s3_write.c gcc -shared -Wl,-soname,libhts.so.3 -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -fvisibility=hidden -o libhts.so kfunc.pico kstring.pico bcf_sr_sort.pico bgzf.pico errmod.pico faidx.pico header.pico hfile.pico hts.pico hts_expr.pico hts_os.pico md5.pico multipart.pico probaln.pico realn.pico regidx.pico region.pico sam.pico synced_bcf_reader.pico vcf_sweep.pico tbx.pico textutils.pico thread_pool.pico vcf.pico vcfutils.pico cram/cram_codecs.pico cram/cram_decode.pico cram/cram_encode.pico cram/cram_external.pico cram/cram_index.pico cram/cram_io.pico cram/cram_stats.pico cram/mFILE.pico cram/open_trace_file.pico cram/pooled_alloc.pico cram/string_alloc.pico htscodecs/htscodecs/arith_dynamic.pico htscodecs/htscodecs/fqzcomp_qual.pico htscodecs/htscodecs/htscodecs.pico htscodecs/htscodecs/pack.pico htscodecs/htscodecs/rANS_static4x16pr.pico htscodecs/htscodecs/rANS_static32x16pr.pico htscodecs/htscodecs/rANS_static.pico htscodecs/htscodecs/rle.pico htscodecs/htscodecs/tokenise_name3.pico htscodecs/htscodecs/utils.pico hfile_libcurl.pico hfile_gcs.pico hfile_s3.pico hfile_s3_write.pico -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread ld: kfunc.pico: in function `kt_fisher_exact': kfunc.c:(.text+0xd28): relocation truncated to fit: R_SPARC_GOT13 against symbol `__stack_chk_guard' defined in .bss section in /usr/lib/libc.so ld: kstring.pico: in function `kputd': kstring.c:(.text+0x18): relocation truncated to fit: R_SPARC_GOT13 against symbol `__stack_chk_guard' defined in .bss section in /usr/lib/libc.so ld: kstring.pico: in function `kvsprintf': kstring.c:(.text+0x6f8): relocation truncated to fit: R_SPARC_GOT13 against symbol `__stack_chk_guard' defined in .bss section in /usr/lib/libc.so ld: kstring.pico: in function `ksprintf': kstring.c:(.text+0x8a8): relocation truncated to fit: R_SPARC_GOT13 against symbol `__stack_chk_guard' defined in .bss section in /usr/lib/libc.so ld: kstring.pico: in function `ksplit_core': kstring.c:(.text+0xbc4): relocation truncated to fit: R_SPARC_GOT13 against symbol `_ctype_tab_' defined in .data section in /usr/lib/libc.so ld: bcf_sr_sort.pico: in function `bcf_sr_sort_set': bcf_sr_sort.c:(.text+0x500): relocation truncated to fit: R_SPARC_GOT13 against symbol `__stack_chk_guard' defined in .bss section in /usr/lib/libc.so ld: bcf_sr_sort.c:(.text+0x3098): relocation truncated to fit: R_SPARC_GOT13 against symbol `__sF' defined in .data section in /usr/lib/libc.so ld: bgzf.pico: in function `mt_destroy': bgzf.c:(.text+0x160): relocation truncated to fit: R_SPARC_GOT13 against symbol `__stack_chk_guard' defined in .bss section in /usr/lib/libc.so ld: bgzf.c:(.text+0x254): relocation truncated to fit: R_SPARC_GOT13 against symbol `__sF' defined in .data section in /usr/lib/libc.so ld: bgzf.pico: in function `bgzf_uncompress': bgzf.c:(.text+0xa1c): relocation truncated to fit: R_SPARC_GOT13 against symbol `__stack_chk_guard' defined in .bss section in /usr/lib/libc.so ld: bgzf.pico: in function `inflate_gzip_block': bgzf.c:(.text+0x15f4): additional relocation overflows omitted from the output distcc[15766] ERROR: compile (null) on localhost failed gmake: *** [Makefile:347: libhts.so] Error 1 *** Error code 2 Stop. make[1]: stopped in /usr/pkgsrc/biology/htslib *** Error code 1 Stop. make: stopped in /usr/pkgsrc/biology/htslib