=> Bootstrap dependency digest>=20211023: found digest-20220214
===> Skipping vulnerability checks.
WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found.
WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'.
===> Building for plink-1.07nb1
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c plink.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c options.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c input.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c binput.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c tinput.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c genome.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c helper.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c stats.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c filters.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c locus.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c multi.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c crandom.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c cluster.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c mds.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c output.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c informative.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c assoc.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c epi.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c prephap.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c phase.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c trio.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c tdt.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c sharing.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c genepi.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c sets.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c perm.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c mh.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c genedrop.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c gxe.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c merge.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c hotel.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c multiple.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c haploCC.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c haploTDT.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c poo.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c webcheck.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c qfam.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c linear.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c bmerge.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c parse.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c mishap.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c legacy.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c homozyg.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c segment.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c model.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c logistic.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c glm.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c dcdflib.cpp
dcdflib.cpp: In function 'void E0000(int, int*, double*, double*, long unsigned int*, long unsigned int*, double*, double*, double*, double*, double*, double*, double*)':
dcdflib.cpp:6025:60: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
if(qcond) ftnstop(" SMALL, X, BIG not monotone in INVR");
^
dcdflib.cpp: In function 'double dlanor(double*)':
dcdflib.cpp:6401:59: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
if(xx < 5.0e0) ftnstop(" Argument too small in DLANOR");
^
dcdflib.cpp: In function 'double dstrem(double*)':
dcdflib.cpp:6782:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
if(*z <= 0.0e0) ftnstop("Zero or negative argument in DSTREM");
^
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c elf.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c dfam.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c fisher.cpp
fisher.cpp: In function 'void fexact(int*, int*, double*, int*, double*, double*, double*, double*, double*, int*)':
fisher.cpp:261:61: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
prterr(1, "NROW must be less than or equal to LDTABL.");
^
fisher.cpp:267:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
prterr(2, "All elements of TABLE must be positive.");
^
fisher.cpp:273:47: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
"PRT and PRE are set to missing values.");
^
fisher.cpp: In function 'void f2xact(int*, int*, double*, int*, double*, double*, double*, double*, double*, double*, int*, int*, int*, int*, int*, int*, int*, int*, double*, int*, int*, double*, double*, double*, int*, int*, double*)':
fisher.cpp:448:59: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
prterr(1, "NROW must be less than or equal to LDTABL.");
^
fisher.cpp:450:40: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
prterr(4, "NCOL must be at least 2");
^
fisher.cpp:501:59: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
prterr(2, "All elements of TABLE must be positive.");
^
fisher.cpp:509:54: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
"PRT and PRE are set to missing values.");
^
fisher.cpp:563:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
"Reduce the workspace size, or use `exact = FALSE'.");
^
fisher.cpp:751:57: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
"Try increasing the size of the workspace.");
^
fisher.cpp: In function 'void f5xact(double*, const double*, int*, int*, int*, int*, double*, int*, int*, int*, int*, int*, int*, int*, int*)':
fisher.cpp:1539:57: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
"Try increasing the size of the workspace.");
^
fisher.cpp:1555:52: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
"Try increasing the size of the workspace.");
^
fisher.cpp:1597:57: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
"Try increasing the size of the workspace.");
^
fisher.cpp: In function 'int iwork(int, int*, int, int)':
fisher.cpp:2001:37: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
prterr(40, "Out of workspace.");
^
fisher.cpp: In function 'void isort(int*, int*)':
fisher.cpp:2078:44: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
prterr(20, "This should never occur.");
^
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c linput.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c sockets.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c lookup.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c proxy.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c pdriver.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c haploQTL.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c haplohelper.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c haplowindow.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c genogroup.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c nonfounderphasing.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c clumpld.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c genoerr.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c em.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c impute.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c metaem.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c profile.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c nlist.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c whap.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c simul.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c gvar.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c cnv.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c step.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c greport.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c flip.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c qualscores.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c cnvqt.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c cfamily.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c setscreen.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c idhelp.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c tag.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c hapglm.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c lookup2.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c blox.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c zed.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c dosage.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c annot.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c metaanal.cpp
c++ -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c r.cpp
In file included from Rconnection.h:42:0,
from r.cpp:29:
Rsrv.h:324:2: error: #error "Cannot determine endianness. Make sure config.h is included or __{BIG|LITTLE}_ENDIAN__ is defined ."
#error "Cannot determine endianness. Make sure config.h is included or __{BIG|LITTLE}_ENDIAN__ is defined ."
^~~~~
In file included from r.cpp:29:0:
Rconnection.h: In constructor 'Rsymbol::Rsymbol(Rmessage*)':
Rconnection.h:203:12: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
{ name=""; fix_content(); }
^~
Rconnection.h: In constructor 'Rsymbol::Rsymbol(unsigned int*, Rmessage*)':
Rconnection.h:206:12: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
{ name=""; fix_content(); }
^~
gmake: *** [Makefile:159: r.o] Error 1
gmake: *** Waiting for unfinished jobs....
*** Error code 2
Stop.
make[1]: stopped in /usr/pkgsrc/biology/plink
*** Error code 1
Stop.
make: stopped in /usr/pkgsrc/biology/plink